Wall clock time and date at job start Mon Mar 30 2020 01:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47052 * 2 1 4 4 C 1.52993 * 109.47305 * 240.00088 * 2 1 3 5 5 C 1.50699 * 109.46862 * 119.99695 * 2 1 3 6 6 O 1.21280 * 120.00274 * 356.92398 * 5 2 1 7 7 N 1.34781 * 119.99807 * 176.91435 * 5 2 1 8 8 C 1.48146 * 127.83810 * 355.29287 * 7 5 2 9 9 C 1.54389 * 104.61214 * 140.38488 * 8 7 5 10 10 C 1.54278 * 104.96598 * 23.87042 * 9 8 7 11 11 C 1.52996 * 110.34518 * 241.12844 * 10 9 8 12 12 C 1.52999 * 110.34722 * 118.96824 * 10 9 8 13 13 N 1.46501 * 109.46862 * 62.87866 * 12 10 9 14 14 C 1.36933 * 120.00512 * 179.97438 * 13 12 10 15 15 H 1.08012 * 119.99520 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00506 * 180.02562 * 14 13 12 17 17 N 1.31610 * 120.00041 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47416 * 89.99687 * 18 16 14 20 20 H 1.48503 * 109.47026 * 209.99973 * 18 16 14 21 21 H 1.48509 * 109.46829 * 329.99420 * 18 16 14 22 22 C 1.48420 * 127.81972 * 175.28961 * 7 5 2 23 23 H 1.09000 * 109.47354 * 300.00047 * 1 2 3 24 24 H 1.09003 * 109.46805 * 59.99677 * 1 2 3 25 25 H 1.08994 * 109.47080 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47041 * 173.77323 * 3 2 1 27 27 H 1.08990 * 109.47297 * 293.77864 * 3 2 1 28 28 H 1.09002 * 109.47121 * 53.77856 * 3 2 1 29 29 H 1.08994 * 109.47356 * 300.00204 * 4 2 1 30 30 H 1.08998 * 109.47435 * 60.00440 * 4 2 1 31 31 H 1.08998 * 109.47045 * 180.02562 * 4 2 1 32 32 H 1.09002 * 110.40523 * 21.60423 * 8 7 5 33 33 H 1.08991 * 110.41017 * 259.16854 * 8 7 5 34 34 H 1.08995 * 110.34555 * 264.99026 * 9 8 7 35 35 H 1.09006 * 110.34095 * 142.74147 * 9 8 7 36 36 H 1.09002 * 109.47061 * 297.11803 * 11 10 9 37 37 H 1.08996 * 109.47494 * 177.12044 * 11 10 9 38 38 H 1.08996 * 109.47339 * 57.11851 * 11 10 9 39 39 H 1.09002 * 109.47316 * 182.87804 * 12 10 9 40 40 H 1.08993 * 109.47231 * 302.88122 * 12 10 9 41 41 H 0.97002 * 120.00021 * 0.02562 * 13 12 10 42 42 H 0.96998 * 120.00326 * 180.02562 * 17 16 14 43 43 H 1.09000 * 110.44590 * 100.87770 * 22 7 5 44 44 H 1.08996 * 110.49467 * 338.35938 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 8 1.2456 -1.1222 2.0566 7 7 3.3558 -0.8882 1.4129 8 6 4.4556 -0.5462 0.4811 9 6 5.5745 0.0112 1.3872 10 6 5.3011 -0.5975 2.7782 11 6 5.0349 0.5094 3.8003 12 6 6.4847 -1.4585 3.2241 13 7 7.6765 -0.6175 3.3599 14 6 8.8654 -1.1727 3.7516 15 1 8.9245 -2.2309 3.9600 16 6 9.9945 -0.3757 3.8807 17 7 9.9227 0.9135 3.6263 18 14 11.6165 -1.1334 4.4144 19 1 12.3724 -1.5793 3.2166 20 1 12.4142 -0.1239 5.1558 21 1 11.3520 -2.2994 5.2953 22 6 4.0417 -1.4711 2.5930 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1243 1.4445 0.1115 27 1 1.7705 1.9232 -0.9403 28 1 1.5886 1.9875 0.8291 29 1 1.6768 -1.7488 -1.2493 30 1 1.6768 -0.2074 -2.1392 31 1 3.1300 -0.7216 -1.2489 32 1 4.1291 0.2126 -0.2300 33 1 4.8001 -1.4371 -0.0437 34 1 5.5194 1.0989 1.4320 35 1 6.5514 -0.3045 1.0208 36 1 5.9236 1.1326 3.9006 37 1 4.7935 0.0630 4.7649 38 1 4.1982 1.1213 3.4635 39 1 6.2557 -1.9219 4.1837 40 1 6.6701 -2.2341 2.4811 41 1 7.6234 0.3329 3.1731 42 1 10.7118 1.4704 3.7162 43 1 4.3223 -2.5061 2.3975 44 1 3.4034 -1.4094 3.4744 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716880551.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:49 Heat of formation + Delta-G solvation = -50.299042 kcal Electronic energy + Delta-G solvation = -21730.448347 eV Core-core repulsion = 18681.970721 eV Total energy + Delta-G solvation = -3048.477626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62514 -39.51708 -36.77573 -36.35327 -34.21874 -32.00039 -30.66041 -28.47639 -28.24179 -27.73772 -27.16495 -24.95339 -24.08712 -22.50759 -20.26031 -19.59180 -19.08859 -17.65116 -17.04758 -16.71137 -16.55052 -15.79777 -15.49422 -15.21277 -15.06569 -14.78470 -14.54156 -14.22378 -14.07168 -13.80475 -13.52995 -13.19121 -13.08156 -13.02125 -12.86562 -12.81905 -12.69046 -12.60778 -12.45009 -12.12809 -12.06222 -11.90693 -11.81509 -11.55319 -11.51909 -11.25047 -10.90229 -10.67323 -9.74523 -8.95094 -7.92292 -5.19625 1.49593 1.50308 1.58580 1.59875 1.93550 2.58312 3.33870 3.41848 3.61171 3.65183 3.81069 3.86448 3.94861 4.19251 4.26211 4.29377 4.36564 4.37912 4.56883 4.67080 4.69401 4.73718 4.74149 4.79920 4.83532 4.92850 4.95028 4.97110 4.99085 5.04162 5.08681 5.14859 5.23814 5.32136 5.33668 5.40162 5.41881 5.46247 5.53254 6.30216 6.57773 7.11646 7.37881 8.13385 8.38423 9.31035 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041257 B = 0.003944 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.502200 B = 7097.509816 C = 7237.745174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.145 4.145 4 C -0.149 4.149 5 C 0.534 3.466 6 O -0.590 6.590 7 N -0.615 5.615 8 C 0.098 3.902 9 C -0.121 4.121 10 C -0.071 4.071 11 C -0.123 4.123 12 C 0.167 3.833 13 N -0.737 5.737 14 C -0.244 4.244 15 H 0.073 0.927 16 C -0.071 4.071 17 N -0.966 5.966 18 Si 0.969 3.031 19 H -0.286 1.286 20 H -0.297 1.297 21 H -0.273 1.273 22 C 0.119 3.881 23 H 0.045 0.955 24 H 0.089 0.911 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.015 0.985 40 H 0.027 0.973 41 H 0.378 0.622 42 H 0.251 0.749 43 H 0.079 0.921 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.268 -0.388 -11.973 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.082 4.082 3 C -0.202 4.202 4 C -0.206 4.206 5 C 0.325 3.675 6 O -0.471 6.471 7 N -0.347 5.347 8 C -0.023 4.023 9 C -0.159 4.159 10 C -0.072 4.072 11 C -0.180 4.180 12 C 0.040 3.960 13 N -0.380 5.380 14 C -0.376 4.376 15 H 0.091 0.909 16 C -0.263 4.263 17 N -0.617 5.617 18 Si 0.799 3.201 19 H -0.213 1.213 20 H -0.224 1.224 21 H -0.198 1.198 22 C -0.004 4.004 23 H 0.065 0.935 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.211 0.789 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.697 -0.741 -11.501 20.288 hybrid contribution 1.163 -0.054 0.851 1.442 sum -15.534 -0.795 -10.650 18.851 Atomic orbital electron populations 1.21660 0.91842 1.02107 1.02553 1.20822 0.97896 0.97001 0.92480 1.22021 1.01790 0.92544 1.03854 1.22126 1.02611 1.00191 0.95665 1.21022 0.79827 0.78358 0.88289 1.90655 1.55432 1.52990 1.48024 1.49074 1.05138 1.61002 1.19525 1.22902 0.85248 1.01697 0.92478 1.22579 0.99033 1.00845 0.93488 1.21503 0.93691 0.95758 0.96276 1.21685 1.00670 0.97692 0.97958 1.20753 0.85508 0.92589 0.97119 1.42493 1.05478 1.08066 1.81985 1.19609 0.88109 0.93496 1.36365 0.90920 1.25460 1.01200 0.96069 1.03607 1.69792 1.29480 1.05063 1.57391 0.85205 0.80100 0.77127 0.77706 1.21336 1.22380 1.19801 1.22318 0.91935 0.96897 0.89268 0.93546 0.89239 0.93285 0.91374 0.88705 0.93062 0.92859 0.88967 0.90575 0.86824 0.89483 0.90813 0.90651 0.93479 0.93290 0.92468 0.96740 0.95477 0.78879 0.94055 0.90305 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 7.77 71.98 0.56 -1.68 16 2 C -0.08 -1.45 0.75 -52.93 -0.04 -1.49 16 3 C -0.14 -2.21 8.25 71.98 0.59 -1.61 16 4 C -0.15 -2.01 8.20 71.98 0.59 -1.42 16 5 C 0.53 14.46 6.62 87.66 0.58 15.04 16 6 O -0.59 -20.94 16.29 -3.03 -0.05 -20.99 16 7 N -0.62 -15.54 3.30 -807.24 -2.66 -18.20 16 8 C 0.10 2.02 4.79 86.53 0.41 2.43 16 9 C -0.12 -3.29 5.84 31.50 0.18 -3.11 16 10 C -0.07 -2.20 0.73 -51.28 -0.04 -2.24 16 11 C -0.12 -3.99 8.06 71.98 0.58 -3.41 16 12 C 0.17 6.44 4.89 86.38 0.42 6.86 16 13 N -0.74 -35.89 4.96 -343.45 -1.70 -37.59 16 14 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 15 H 0.07 3.85 7.83 -2.90 -0.02 3.82 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 17 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 18 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 C 0.12 3.38 6.14 86.48 0.53 3.91 16 23 H 0.05 0.97 8.07 -2.39 -0.02 0.96 16 24 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 26 H 0.07 1.05 5.29 -2.39 -0.01 1.04 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.95 4.72 -2.39 -0.01 0.94 16 32 H 0.11 1.76 3.92 -2.39 -0.01 1.75 16 33 H 0.09 1.60 8.10 -2.39 -0.02 1.58 16 34 H 0.07 1.97 7.71 -2.39 -0.02 1.96 16 35 H 0.07 2.35 7.53 -2.38 -0.02 2.34 16 36 H 0.05 1.75 6.87 -2.39 -0.02 1.73 16 37 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.01 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.38 19.38 6.22 -92.71 -0.58 18.81 16 42 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.08 2.13 7.86 -2.39 -0.02 2.11 16 44 H 0.07 2.13 7.65 -2.39 -0.02 2.11 16 Total: -1.00 -67.61 337.48 3.97 -63.64 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.39 Total: 25.79 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: 5.68 Total: -2.74 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.08 Total: -113.24 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.05 Total: -20.99 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -67.61 3.97 -63.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716880551.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.342 kcal (2) G-P(sol) polarization free energy of solvation -67.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds