Wall clock time and date at job start Mon Mar 30 2020 01:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53002 * 109.47325 * 270.27624 * 3 2 1 5 5 C 1.53000 * 109.47118 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46748 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99969 * 179.97438 * 6 5 4 8 8 H 1.08010 * 119.99696 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00355 * 180.02562 * 7 6 5 10 10 N 1.31625 * 119.99605 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00379 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47296 * 89.99389 * 11 9 7 13 13 H 1.48497 * 109.47158 * 209.99780 * 11 9 7 14 14 H 1.48502 * 109.46794 * 329.99625 * 11 9 7 15 15 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 16 16 O 1.21279 * 119.99925 * 179.72608 * 15 2 1 17 17 C 1.50700 * 119.99961 * 359.72839 * 15 2 1 18 18 C 1.52992 * 109.47257 * 180.02562 * 17 15 2 19 19 C 1.53005 * 109.47274 * 179.97438 * 18 17 15 20 20 C 1.53001 * 115.54566 * 34.32939 * 19 18 17 21 21 C 1.52995 * 117.50041 * 248.62100 * 19 18 17 22 22 C 1.53003 * 60.00177 * 252.50999 * 21 19 18 23 23 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 24 24 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 25 25 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 26 26 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 27 27 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 28 28 H 1.08998 * 109.46465 * 299.99693 * 4 3 2 29 29 H 1.08993 * 109.47021 * 59.99589 * 4 3 2 30 30 H 1.09004 * 109.46628 * 299.99588 * 5 4 3 31 31 H 1.08997 * 109.47400 * 59.99416 * 5 4 3 32 32 H 0.97002 * 120.00142 * 359.97438 * 6 5 4 33 33 H 0.96999 * 119.99420 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46932 * 300.00223 * 17 15 2 35 35 H 1.08997 * 109.47392 * 59.99562 * 17 15 2 36 36 H 1.09004 * 109.47330 * 299.99977 * 18 17 15 37 37 H 1.09005 * 109.47124 * 59.99773 * 18 17 15 38 38 H 1.09004 * 109.47056 * 85.58501 * 20 19 18 39 39 H 1.08995 * 109.46946 * 205.57848 * 20 19 18 40 40 H 1.08996 * 109.47471 * 325.58246 * 20 19 18 41 41 H 1.09001 * 117.50038 * 0.02562 * 21 19 18 42 42 H 1.08996 * 117.50018 * 145.01766 * 21 19 18 43 43 H 1.08993 * 117.50238 * 252.51061 * 22 21 19 44 44 H 1.08999 * 117.49828 * 107.48834 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4465 1.7138 -1.4425 5 6 3.2111 3.0391 -1.4424 6 7 3.4500 3.4650 -2.8236 7 6 4.1214 4.6320 -3.0739 8 1 4.4744 5.2386 -2.2529 9 6 4.3474 5.0358 -4.3825 10 7 3.9168 4.2967 -5.3829 11 14 5.2639 6.6273 -4.7239 12 1 6.7194 6.3494 -4.8208 13 1 4.7849 7.2097 -6.0032 14 1 5.0158 7.5881 -3.6190 15 6 2.1388 -1.1673 -0.0056 16 8 3.3516 -1.1673 -0.0106 17 6 1.3853 -2.4724 -0.0056 18 6 2.3794 -3.6353 -0.0118 19 6 1.6144 -4.9603 -0.0112 20 6 0.2941 -4.9602 -0.7843 21 6 1.6947 -5.8219 1.2506 22 6 2.4364 -6.2507 -0.0170 23 1 -0.3634 -0.0049 1.0276 24 1 -0.3634 0.8924 -0.5096 25 1 -0.3634 -0.8874 -0.5181 26 1 1.6106 2.0271 0.5181 27 1 3.1521 1.1371 0.5096 28 1 3.0335 0.9553 -1.9605 29 1 1.4921 1.8454 -1.9520 30 1 2.6237 3.7973 -0.9245 31 1 4.1655 2.9079 -0.9327 32 1 3.1327 2.9203 -3.5609 33 1 4.0750 4.5788 -6.2974 34 1 0.7623 -2.5322 0.8868 35 1 0.7549 -2.5280 -0.8930 36 1 3.0028 -3.5756 -0.9040 37 1 3.0094 -3.5794 0.8760 38 1 0.4888 -5.1716 -1.8358 39 1 -0.3660 -5.7255 -0.3761 40 1 -0.1810 -3.9836 -0.6920 41 1 2.2922 -5.4445 2.0805 42 1 0.8068 -6.3887 1.5303 43 1 2.0365 -7.0997 -0.5713 44 1 3.5223 -6.1557 -0.0213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723164189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:47 Heat of formation + Delta-G solvation = -14.875098 kcal Electronic energy + Delta-G solvation = -20179.150528 eV Core-core repulsion = 17132.208999 eV Total energy + Delta-G solvation = -3046.941529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.05699 -38.48240 -36.13570 -34.77852 -32.84987 -31.90458 -29.76545 -28.52262 -26.91275 -26.01816 -24.18446 -22.71918 -22.43100 -20.88710 -19.22352 -18.89237 -17.18152 -17.01568 -16.16536 -15.87750 -15.50287 -14.77243 -14.52262 -14.35632 -14.03343 -13.59883 -13.23214 -13.18549 -12.98728 -12.83752 -12.57266 -12.46715 -12.33273 -11.91415 -11.83631 -11.71026 -11.40680 -11.18398 -10.89106 -10.81833 -10.70183 -10.38766 -10.33968 -10.04962 -9.84425 -9.72506 -9.63008 -8.82555 -8.62328 -6.87136 -5.71835 -3.00421 2.66832 2.99962 3.47053 3.47428 3.51576 3.53507 4.29072 4.43948 4.55790 4.63759 4.65445 4.87837 4.88612 5.04321 5.09722 5.20327 5.27299 5.34604 5.37557 5.45470 5.49424 5.51525 5.58816 5.61304 5.63496 5.74348 5.75237 5.83360 5.86819 5.95920 6.00709 6.12489 6.14749 6.34697 6.43505 6.58547 6.91036 6.93691 7.38936 7.74081 8.21797 8.47300 9.57937 10.16855 10.51538 11.51373 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.002815 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.587976 B = 9943.250121 C =10234.205335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.618 5.618 3 C 0.118 3.882 4 C -0.138 4.138 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.508 3.492 16 O -0.536 6.536 17 C -0.137 4.137 18 C -0.067 4.067 19 C -0.128 4.128 20 C -0.123 4.123 21 C -0.177 4.177 22 C -0.176 4.176 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.020 0.980 32 H 0.383 0.617 33 H 0.255 0.745 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.353 -19.415 13.940 26.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.351 5.351 3 C -0.005 4.005 4 C -0.177 4.177 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 C 0.296 3.704 16 O -0.413 6.413 17 C -0.177 4.177 18 C -0.105 4.105 19 C -0.128 4.128 20 C -0.179 4.179 21 C -0.214 4.214 22 C -0.213 4.213 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.217 0.783 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.629 -19.245 13.974 26.050 hybrid contribution 0.263 0.720 -0.552 0.945 sum -10.367 -18.524 13.423 25.115 Atomic orbital electron populations 1.21802 0.79705 1.03487 1.01613 1.47942 1.06954 1.06471 1.73757 1.21481 0.97485 0.83579 0.97911 1.22050 1.01007 0.98912 0.95767 1.20542 0.96059 0.91900 0.88677 1.42362 1.68380 1.25907 1.01129 1.19256 1.27767 0.98064 0.91813 0.91152 1.24759 1.01787 0.99113 0.95565 1.69673 1.51587 1.38989 0.98139 0.86163 0.79528 0.83099 0.77263 1.21705 1.21781 1.20762 1.20769 0.88166 0.85456 0.75994 1.90722 1.14021 1.87371 1.49151 1.21779 0.99598 0.92119 1.04163 1.20869 0.96300 0.89613 1.03685 1.21541 0.98118 0.92273 1.00902 1.21487 0.94403 1.02342 0.99713 1.23172 1.02777 1.03650 0.91793 1.23025 0.99020 0.97848 1.01386 0.92654 0.90637 0.91159 0.90620 0.89837 0.91624 0.92070 0.96421 0.96230 0.78332 0.93553 0.89028 0.88520 0.90647 0.91022 0.92074 0.92575 0.91444 0.88864 0.89012 0.88889 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 10.24 59.84 0.61 1.24 16 2 N -0.62 -7.56 2.87 -181.58 -0.52 -8.08 16 3 C 0.12 1.67 5.40 -4.04 -0.02 1.65 16 4 C -0.14 -2.43 5.65 -26.73 -0.15 -2.58 16 5 C 0.16 3.34 6.26 -4.04 -0.03 3.31 16 6 N -0.73 -19.76 5.60 -59.91 -0.34 -20.10 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 9 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 10 N -0.93 -29.26 13.06 55.49 0.72 -28.54 16 11 Si 0.91 23.05 29.55 -169.99 -5.02 18.03 16 12 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 13 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 C 0.51 6.83 7.67 -10.98 -0.08 6.75 16 16 O -0.54 -9.56 15.56 5.56 0.09 -9.47 16 17 C -0.14 -1.26 3.26 -27.89 -0.09 -1.35 16 18 C -0.07 -0.67 4.69 -26.73 -0.13 -0.79 16 19 C -0.13 -1.04 2.47 -154.51 -0.38 -1.42 16 20 C -0.12 -0.83 9.49 37.16 0.35 -0.47 16 21 C -0.18 -1.30 9.82 -26.73 -0.26 -1.56 16 22 C -0.18 -1.37 9.97 -26.73 -0.27 -1.63 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 25 H 0.07 0.44 6.44 -51.93 -0.33 0.10 16 26 H 0.08 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 28 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.38 10.83 7.67 -40.82 -0.31 10.51 16 33 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.09 0.67 8.11 -51.93 -0.42 0.25 16 35 H 0.10 0.75 5.70 -51.93 -0.30 0.46 16 36 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 37 H 0.07 0.78 7.86 -51.93 -0.41 0.37 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.33 7.90 -51.93 -0.41 -0.08 16 40 H 0.07 0.40 5.59 -51.93 -0.29 0.11 16 41 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 42 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 356.70 15.07 5.38 5.38 Total: -1.00 -34.45 356.70 -8.27 -42.72 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.88 Total: 4.64 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -0.69 Total: -4.57 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.13 Total: -56.71 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 23.05 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.45 -8.27 -42.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723164189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.842 kcal (2) G-P(sol) polarization free energy of solvation -34.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds