Wall clock time and date at job start Mon Mar 30 2020 01:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53002 * 109.47325 * 270.27624 * 3 2 1 5 5 C 1.53000 * 109.47118 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46748 * 179.97438 * 5 4 3 7 7 C 1.36941 * 119.99969 * 179.97438 * 6 5 4 8 8 H 1.08010 * 119.99696 * 359.97438 * 7 6 5 9 9 C 1.38806 * 120.00355 * 180.02562 * 7 6 5 10 10 N 1.31625 * 119.99605 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00379 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47296 * 89.99389 * 11 9 7 13 13 H 1.48497 * 109.47158 * 209.99780 * 11 9 7 14 14 H 1.48502 * 109.46794 * 329.99625 * 11 9 7 15 15 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 16 16 O 1.21279 * 119.99925 * 179.72608 * 15 2 1 17 17 C 1.50700 * 119.99961 * 359.72839 * 15 2 1 18 18 C 1.52992 * 109.47257 * 180.02562 * 17 15 2 19 19 C 1.53005 * 109.47274 * 179.97438 * 18 17 15 20 20 C 1.53001 * 115.54566 * 34.32939 * 19 18 17 21 21 C 1.52995 * 117.50041 * 248.62100 * 19 18 17 22 22 C 1.53003 * 60.00177 * 252.50999 * 21 19 18 23 23 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 24 24 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 25 25 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 26 26 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 27 27 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 28 28 H 1.08998 * 109.46465 * 299.99693 * 4 3 2 29 29 H 1.08993 * 109.47021 * 59.99589 * 4 3 2 30 30 H 1.09004 * 109.46628 * 299.99588 * 5 4 3 31 31 H 1.08997 * 109.47400 * 59.99416 * 5 4 3 32 32 H 0.97002 * 120.00142 * 359.97438 * 6 5 4 33 33 H 0.96999 * 119.99420 * 180.02562 * 10 9 7 34 34 H 1.09004 * 109.46932 * 300.00223 * 17 15 2 35 35 H 1.08997 * 109.47392 * 59.99562 * 17 15 2 36 36 H 1.09004 * 109.47330 * 299.99977 * 18 17 15 37 37 H 1.09005 * 109.47124 * 59.99773 * 18 17 15 38 38 H 1.09004 * 109.47056 * 85.58501 * 20 19 18 39 39 H 1.08995 * 109.46946 * 205.57848 * 20 19 18 40 40 H 1.08996 * 109.47471 * 325.58246 * 20 19 18 41 41 H 1.09001 * 117.50038 * 0.02562 * 21 19 18 42 42 H 1.08996 * 117.50018 * 145.01766 * 21 19 18 43 43 H 1.08993 * 117.50238 * 252.51061 * 22 21 19 44 44 H 1.08999 * 117.49828 * 107.48834 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4465 1.7138 -1.4425 5 6 3.2111 3.0391 -1.4424 6 7 3.4500 3.4650 -2.8236 7 6 4.1214 4.6320 -3.0739 8 1 4.4744 5.2386 -2.2529 9 6 4.3474 5.0358 -4.3825 10 7 3.9168 4.2967 -5.3829 11 14 5.2639 6.6273 -4.7239 12 1 6.7194 6.3494 -4.8208 13 1 4.7849 7.2097 -6.0032 14 1 5.0158 7.5881 -3.6190 15 6 2.1388 -1.1673 -0.0056 16 8 3.3516 -1.1673 -0.0106 17 6 1.3853 -2.4724 -0.0056 18 6 2.3794 -3.6353 -0.0118 19 6 1.6144 -4.9603 -0.0112 20 6 0.2941 -4.9602 -0.7843 21 6 1.6947 -5.8219 1.2506 22 6 2.4364 -6.2507 -0.0170 23 1 -0.3634 -0.0049 1.0276 24 1 -0.3634 0.8924 -0.5096 25 1 -0.3634 -0.8874 -0.5181 26 1 1.6106 2.0271 0.5181 27 1 3.1521 1.1371 0.5096 28 1 3.0335 0.9553 -1.9605 29 1 1.4921 1.8454 -1.9520 30 1 2.6237 3.7973 -0.9245 31 1 4.1655 2.9079 -0.9327 32 1 3.1327 2.9203 -3.5609 33 1 4.0750 4.5788 -6.2974 34 1 0.7623 -2.5322 0.8868 35 1 0.7549 -2.5280 -0.8930 36 1 3.0028 -3.5756 -0.9040 37 1 3.0094 -3.5794 0.8760 38 1 0.4888 -5.1716 -1.8358 39 1 -0.3660 -5.7255 -0.3761 40 1 -0.1810 -3.9836 -0.6920 41 1 2.2922 -5.4445 2.0805 42 1 0.8068 -6.3887 1.5303 43 1 2.0365 -7.0997 -0.5713 44 1 3.5223 -6.1557 -0.0213 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723164189.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:46 Heat of formation + Delta-G solvation = -36.408501 kcal Electronic energy + Delta-G solvation = -20180.084286 eV Core-core repulsion = 17132.208999 eV Total energy + Delta-G solvation = -3047.875287 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06098 -39.16603 -37.53594 -36.38769 -34.24085 -33.25075 -31.47317 -29.09559 -27.93344 -27.21787 -25.66157 -24.04402 -23.26306 -22.49015 -20.13247 -19.63043 -19.17718 -18.10561 -17.25851 -16.87397 -16.51162 -16.23287 -15.87468 -15.52314 -15.25103 -15.11272 -14.68358 -14.24601 -13.89409 -13.65782 -13.55333 -13.38798 -13.29069 -13.02984 -12.90154 -12.75521 -12.73149 -12.42174 -12.35915 -12.07840 -12.07599 -11.90383 -11.83293 -11.81333 -10.98614 -10.97259 -10.77029 -10.46554 -9.65676 -9.05548 -7.98448 -5.28870 1.45235 1.48448 1.56811 1.64696 2.05884 2.54344 2.86169 3.34876 3.52239 3.75952 3.85128 3.91100 4.02042 4.04320 4.20146 4.23465 4.30734 4.38835 4.44019 4.52392 4.57627 4.67148 4.71127 4.76895 4.80474 4.86884 4.91993 4.97340 5.01183 5.04945 5.12919 5.18996 5.25609 5.27980 5.28713 5.29627 5.45486 5.49471 5.57070 6.23693 6.43623 7.20945 7.28980 8.03732 8.27604 9.25544 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032303 B = 0.002815 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.587976 B = 9943.250121 C =10234.205335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.617 5.617 3 C 0.125 3.875 4 C -0.121 4.121 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.250 4.250 8 H 0.077 0.923 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.980 3.020 12 H -0.288 1.288 13 H -0.292 1.292 14 H -0.266 1.266 15 C 0.497 3.503 16 O -0.592 6.592 17 C -0.125 4.125 18 C -0.065 4.065 19 C -0.132 4.132 20 C -0.122 4.122 21 C -0.169 4.169 22 C -0.186 4.186 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.035 0.965 31 H 0.012 0.988 32 H 0.372 0.628 33 H 0.253 0.747 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.440 -19.436 15.176 28.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.349 5.349 3 C 0.002 3.998 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.382 4.382 8 H 0.095 0.905 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.808 3.192 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.191 1.191 15 C 0.288 3.712 16 O -0.473 6.473 17 C -0.164 4.164 18 C -0.103 4.103 19 C -0.132 4.132 20 C -0.179 4.179 21 C -0.205 4.205 22 C -0.223 4.223 23 H 0.098 0.902 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.203 0.797 33 H 0.061 0.939 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.126 0.874 43 H 0.122 0.878 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.763 -19.268 15.260 27.695 hybrid contribution 0.912 0.695 -0.886 1.450 sum -11.850 -18.573 14.374 26.305 Atomic orbital electron populations 1.22137 0.76655 1.04821 1.03676 1.48062 1.08792 1.05285 1.72741 1.21282 0.97774 0.85477 0.95295 1.21852 1.00051 0.95998 0.98056 1.20705 0.96411 0.94102 0.86004 1.42618 1.68289 1.25385 1.02948 1.19689 1.27465 0.98778 0.92246 0.90464 1.25679 1.03181 1.02836 0.95400 1.69838 1.53170 1.40927 0.98329 0.85051 0.77850 0.79062 0.77257 1.21461 1.21804 1.19069 1.21599 0.87801 0.87024 0.74809 1.90698 1.16633 1.88209 1.51774 1.21799 0.99139 0.88989 1.06445 1.20780 0.96436 0.91478 1.01607 1.21525 0.98662 0.91065 1.01975 1.21514 0.93608 1.03499 0.99247 1.23224 1.03061 1.03005 0.91243 1.23089 0.98626 0.98247 1.02292 0.90164 0.90359 0.88898 0.87640 0.91835 0.94645 0.91315 0.94746 0.96998 0.79651 0.93874 0.86031 0.86415 0.93353 0.92688 0.92481 0.91319 0.90271 0.89243 0.87363 0.87842 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 10.24 127.77 1.31 2.17 16 2 N -0.62 -14.08 2.87 -846.77 -2.43 -16.52 16 3 C 0.13 3.44 5.40 86.38 0.47 3.91 16 4 C -0.12 -4.24 5.65 30.60 0.17 -4.07 16 5 C 0.15 6.61 6.26 86.38 0.54 7.15 16 6 N -0.75 -40.94 5.60 -343.45 -1.92 -42.86 16 7 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 10 N -0.97 -61.72 13.06 21.65 0.28 -61.43 16 11 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 12 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 13 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 14 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 15 C 0.50 13.15 7.67 87.66 0.67 13.82 16 16 O -0.59 -22.05 15.56 -3.03 -0.05 -22.10 16 17 C -0.12 -2.07 3.26 29.85 0.10 -1.97 16 18 C -0.06 -1.30 4.69 30.59 0.14 -1.16 16 19 C -0.13 -1.96 2.47 -52.18 -0.13 -2.09 16 20 C -0.12 -1.33 9.49 71.98 0.68 -0.64 16 21 C -0.17 -2.20 9.82 30.59 0.30 -1.90 16 22 C -0.19 -2.77 9.97 30.60 0.31 -2.46 16 23 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.08 0.99 8.07 -2.39 -0.02 0.97 16 25 H 0.09 0.77 6.44 -2.39 -0.02 0.75 16 26 H 0.11 2.28 8.07 -2.39 -0.02 2.26 16 27 H 0.06 2.02 7.42 -2.38 -0.02 2.00 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.43 16 29 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.37 21.57 7.67 -92.71 -0.71 20.86 16 33 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.12 1.33 8.11 -2.38 -0.02 1.31 16 35 H 0.12 1.49 5.70 -2.39 -0.01 1.47 16 36 H 0.05 1.20 8.10 -2.38 -0.02 1.19 16 37 H 0.05 1.25 7.86 -2.38 -0.02 1.23 16 38 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.07 0.59 7.90 -2.39 -0.02 0.57 16 40 H 0.08 0.66 5.59 -2.39 -0.01 0.64 16 41 H 0.09 1.23 8.05 -2.39 -0.02 1.21 16 42 H 0.11 1.07 8.05 -2.39 -0.02 1.05 16 43 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -76.50 356.70 4.02 -72.48 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.25 Total: 26.31 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 5.87 Total: -5.34 kcal Atomic # 7 Polarization: -116.74 SS G_CDS: -4.07 Total: -120.81 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.10 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -76.50 4.02 -72.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723164189.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.071 kcal (2) G-P(sol) polarization free energy of solvation -76.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds