Wall clock time and date at job start Mon Mar 30 2020 01:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99825 * 2 1 4 4 H 1.08005 * 119.99695 * 204.49966 * 3 2 1 5 5 C 1.38817 * 120.00035 * 24.50042 * 3 2 1 6 6 N 1.31617 * 119.99789 * 7.57524 * 5 3 2 7 7 Si 1.86796 * 119.99924 * 187.57582 * 5 3 2 8 8 H 1.48501 * 109.47253 * 89.99591 * 7 5 3 9 9 H 1.48495 * 109.47356 * 209.99888 * 7 5 3 10 10 H 1.48498 * 109.47141 * 330.00196 * 7 5 3 11 11 C 1.46498 * 120.00109 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47336 * 269.99779 * 11 2 1 13 13 N 1.46502 * 109.47180 * 179.97438 * 12 11 2 14 14 C 1.46496 * 120.00297 * 270.00248 * 13 12 11 15 15 C 1.34780 * 119.99673 * 90.00603 * 13 12 11 16 16 O 1.21284 * 119.99798 * 354.64842 * 15 13 12 17 17 C 1.50700 * 120.00031 * 174.65006 * 15 13 12 18 18 C 1.52999 * 110.01225 * 59.33681 * 17 15 13 19 19 C 1.54264 * 110.03081 * 297.94764 * 17 15 13 20 20 C 1.54971 * 104.15774 * 217.13553 * 19 17 15 21 21 C 1.54886 * 102.77430 * 37.88947 * 20 19 17 22 22 C 1.53869 * 110.03112 * 180.72988 * 17 15 13 23 23 H 1.08998 * 109.47398 * 275.04156 * 1 2 3 24 24 H 1.08995 * 109.47352 * 35.05005 * 1 2 3 25 25 H 1.09001 * 109.46861 * 155.04580 * 1 2 3 26 26 H 0.96999 * 119.99571 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47133 * 149.99917 * 11 2 1 28 28 H 1.08999 * 109.47221 * 30.00327 * 11 2 1 29 29 H 1.08999 * 109.47413 * 300.00431 * 12 11 2 30 30 H 1.09005 * 109.46683 * 60.00455 * 12 11 2 31 31 H 1.09003 * 109.47155 * 93.03385 * 14 13 12 32 32 H 1.08998 * 109.47106 * 213.03610 * 14 13 12 33 33 H 1.09003 * 109.47079 * 333.03360 * 14 13 12 34 34 H 1.09000 * 109.47004 * 60.70355 * 18 17 15 35 35 H 1.09007 * 109.46784 * 180.70039 * 18 17 15 36 36 H 1.08996 * 109.47766 * 300.69691 * 18 17 15 37 37 H 1.09001 * 110.48894 * 335.78198 * 19 17 15 38 38 H 1.09003 * 110.48697 * 98.42528 * 19 17 15 39 39 H 1.09000 * 110.71477 * 279.57500 * 20 19 17 40 40 H 1.08995 * 110.92301 * 156.29703 * 20 19 17 41 41 H 1.09004 * 110.48612 * 203.40619 * 21 20 19 42 42 H 1.08993 * 110.48804 * 80.76190 * 21 20 19 43 43 H 1.09002 * 110.03243 * 238.57165 * 22 17 15 44 44 H 1.08999 * 110.03158 * 359.94962 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1567 1.2280 -0.3879 5 6 1.5493 2.3340 0.4985 6 7 0.3842 2.2566 1.1059 7 14 2.3950 3.9885 0.3074 8 1 1.9681 4.6183 -0.9679 9 1 2.0222 4.8692 1.4434 10 1 3.8670 3.7935 0.2945 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 7 3.1846 -2.9788 1.4437 14 6 2.4516 -4.2472 1.4445 15 6 4.5324 -2.9792 1.4436 16 8 5.1391 -1.9337 1.3451 17 6 5.2854 -4.2789 1.5659 18 6 4.9119 -5.2110 0.4116 19 6 4.9613 -4.9525 2.9152 20 6 6.3047 -5.5884 3.3539 21 6 7.3458 -4.5330 2.9052 22 6 6.8009 -4.0125 1.5591 23 1 -0.3634 0.0903 1.0237 24 1 -0.3634 0.8412 -0.5901 25 1 -0.3633 -0.9318 -0.4336 26 1 -0.0355 3.0589 1.4539 27 1 3.1499 -1.1386 -0.5133 28 1 1.6085 -2.0286 -0.5130 29 1 3.0416 -0.9499 1.9567 30 1 1.5001 -1.8399 1.9571 31 1 2.3168 -4.5895 0.4184 32 1 3.0159 -4.9925 2.0050 33 1 1.4769 -4.1033 1.9106 34 1 5.1787 -4.7417 -0.5354 35 1 5.4517 -6.1523 0.5154 36 1 3.8392 -5.4033 0.4323 37 1 4.6350 -4.2101 3.6436 38 1 4.1992 -5.7209 2.7847 39 1 6.4688 -6.5356 2.8402 40 1 6.3356 -5.7262 4.4346 41 1 8.3232 -4.9957 2.7678 42 1 7.4051 -3.7227 3.6317 43 1 7.2705 -4.5481 0.7340 44 1 6.9917 -2.9433 1.4665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732587060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:46 Heat of formation + Delta-G solvation = -11.727656 kcal Electronic energy + Delta-G solvation = -21770.386193 eV Core-core repulsion = 18723.581148 eV Total energy + Delta-G solvation = -3046.805045 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.53343 -37.42792 -35.94402 -34.90900 -31.91028 -30.97535 -28.98782 -28.15502 -26.73804 -25.80159 -25.39119 -23.63951 -21.10358 -20.83856 -20.11021 -18.39385 -16.77437 -16.60107 -15.96403 -15.28971 -15.15335 -14.51076 -14.39867 -14.08860 -13.56372 -13.47282 -13.05344 -12.94744 -12.72446 -12.41459 -12.30328 -12.19963 -11.79883 -11.54487 -11.27312 -11.10234 -10.95502 -10.82841 -10.78381 -10.75892 -10.72249 -10.50239 -10.43971 -10.07044 -9.89342 -9.69700 -9.22199 -8.53980 -8.28091 -6.66396 -5.65759 -3.13304 2.97479 3.34840 3.45581 3.50454 3.54446 4.35149 4.45560 4.58234 4.62331 4.92589 5.10344 5.17647 5.23836 5.32898 5.39689 5.45723 5.51143 5.56521 5.63489 5.68198 5.73280 5.73710 5.76431 5.84942 5.89195 5.96577 6.03887 6.16754 6.23301 6.31422 6.33891 6.38726 6.72407 6.77883 6.85725 7.13623 7.43234 7.78014 7.79561 7.90824 8.48094 8.57796 9.32280 9.93275 10.42138 11.39298 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.004635 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.276410 B = 6039.476247 C = 6619.599226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.600 5.600 3 C -0.249 4.249 4 H 0.069 0.931 5 C 0.002 3.998 6 N -0.913 5.913 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.145 3.855 12 C 0.095 3.905 13 N -0.610 5.610 14 C 0.065 3.935 15 C 0.517 3.483 16 O -0.531 6.531 17 C -0.083 4.083 18 C -0.152 4.152 19 C -0.113 4.113 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.116 4.116 23 H 0.029 0.971 24 H 0.044 0.956 25 H -0.006 1.006 26 H 0.251 0.749 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.386 -19.478 2.822 21.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.324 5.324 3 C -0.379 4.379 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.558 5.558 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.016 3.984 12 C -0.029 4.029 13 N -0.344 5.344 14 C -0.078 4.078 15 C 0.304 3.696 16 O -0.407 6.407 17 C -0.086 4.086 18 C -0.209 4.209 19 C -0.151 4.151 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.153 4.153 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.013 0.987 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.567 -18.743 2.820 20.409 hybrid contribution 0.194 0.923 0.039 0.944 sum 7.761 -17.820 2.858 19.646 Atomic orbital electron populations 1.20825 0.82451 0.95336 0.99389 1.43947 1.01910 1.00642 1.85854 1.19276 0.99060 0.85725 1.33831 0.91324 1.25080 0.97522 0.98698 0.98274 1.70048 1.17051 1.27377 1.41358 0.86224 0.79239 0.83898 0.77096 1.21520 1.21700 1.20361 1.21100 0.95959 0.88049 0.93252 1.22596 0.95289 0.83270 1.01774 1.47972 1.05598 1.07632 1.73190 1.22233 0.97508 0.86522 1.01512 1.20459 0.82216 0.90721 0.76247 1.90697 1.67391 1.33615 1.48975 1.21362 0.96563 0.93651 0.97044 1.22213 1.02947 0.98628 0.97116 1.22548 0.97833 0.99502 0.95189 1.22504 0.94570 0.98319 1.00598 1.22350 0.98192 0.98307 0.97260 1.22230 0.91903 1.03828 0.97370 0.95242 0.93721 0.98714 0.93847 0.93563 0.94823 0.89960 0.91608 0.92657 0.90377 0.91320 0.92154 0.91797 0.90778 0.91118 0.90536 0.91423 0.91536 0.91720 0.91568 0.91545 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.16 9.00 59.85 0.54 4.70 16 2 N -0.60 -15.88 2.92 -181.12 -0.53 -16.41 16 3 C -0.25 -7.25 9.66 -15.06 -0.15 -7.40 16 4 H 0.07 2.02 7.84 -52.48 -0.41 1.61 16 5 C 0.00 0.06 5.20 -17.43 -0.09 -0.03 16 6 N -0.91 -27.26 10.52 55.49 0.58 -26.68 16 7 Si 0.91 22.93 29.56 -169.99 -5.02 17.91 16 8 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 9 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.14 3.21 6.03 -4.04 -0.02 3.19 16 12 C 0.09 1.91 5.73 -4.04 -0.02 1.89 16 13 N -0.61 -9.79 2.87 -181.57 -0.52 -10.31 16 14 C 0.07 0.73 8.71 59.84 0.52 1.25 16 15 C 0.52 8.71 6.34 -10.98 -0.07 8.64 16 16 O -0.53 -11.47 14.84 5.55 0.08 -11.39 16 17 C -0.08 -1.00 0.61 -154.55 -0.09 -1.10 16 18 C -0.15 -1.49 7.83 37.16 0.29 -1.20 16 19 C -0.11 -1.12 4.68 -25.03 -0.12 -1.24 16 20 C -0.12 -1.04 6.91 -24.70 -0.17 -1.21 16 21 C -0.12 -1.23 6.83 -25.08 -0.17 -1.40 16 22 C -0.12 -1.40 6.05 -25.62 -0.16 -1.55 16 23 H 0.03 0.79 7.34 -51.93 -0.38 0.41 16 24 H 0.04 1.21 7.29 -51.93 -0.38 0.83 16 25 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 26 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 27 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 28 H 0.03 0.67 7.86 -51.93 -0.41 0.26 16 29 H 0.08 1.98 7.50 -51.93 -0.39 1.59 16 30 H 0.07 1.29 7.87 -51.93 -0.41 0.88 16 31 H 0.06 0.56 7.03 -51.93 -0.37 0.20 16 32 H 0.08 0.70 3.38 -51.93 -0.18 0.52 16 33 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.65 4.21 -51.93 -0.22 0.43 16 37 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 38 H 0.08 0.60 6.06 -51.93 -0.31 0.29 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 44 H 0.09 1.37 6.39 -51.93 -0.33 1.04 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -33.04 334.82 -7.57 -40.60 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -7.49 Total: -3.30 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 0.29 Total: 4.53 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.47 Total: -53.40 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.04 -7.57 -40.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732587060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.877 kcal (2) G-P(sol) polarization free energy of solvation -33.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds