Wall clock time and date at job start Mon Mar 30 2020 01:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36938 * 119.99825 * 2 1 4 4 H 1.08005 * 119.99695 * 204.49966 * 3 2 1 5 5 C 1.38817 * 120.00035 * 24.50042 * 3 2 1 6 6 N 1.31617 * 119.99789 * 7.57524 * 5 3 2 7 7 Si 1.86796 * 119.99924 * 187.57582 * 5 3 2 8 8 H 1.48501 * 109.47253 * 89.99591 * 7 5 3 9 9 H 1.48495 * 109.47356 * 209.99888 * 7 5 3 10 10 H 1.48498 * 109.47141 * 330.00196 * 7 5 3 11 11 C 1.46498 * 120.00109 * 179.97438 * 2 1 3 12 12 C 1.52997 * 109.47336 * 269.99779 * 11 2 1 13 13 N 1.46502 * 109.47180 * 179.97438 * 12 11 2 14 14 C 1.46496 * 120.00297 * 270.00248 * 13 12 11 15 15 C 1.34780 * 119.99673 * 90.00603 * 13 12 11 16 16 O 1.21284 * 119.99798 * 354.64842 * 15 13 12 17 17 C 1.50700 * 120.00031 * 174.65006 * 15 13 12 18 18 C 1.52999 * 110.01225 * 59.33681 * 17 15 13 19 19 C 1.54264 * 110.03081 * 297.94764 * 17 15 13 20 20 C 1.54971 * 104.15774 * 217.13553 * 19 17 15 21 21 C 1.54886 * 102.77430 * 37.88947 * 20 19 17 22 22 C 1.53869 * 110.03112 * 180.72988 * 17 15 13 23 23 H 1.08998 * 109.47398 * 275.04156 * 1 2 3 24 24 H 1.08995 * 109.47352 * 35.05005 * 1 2 3 25 25 H 1.09001 * 109.46861 * 155.04580 * 1 2 3 26 26 H 0.96999 * 119.99571 * 180.02562 * 6 5 3 27 27 H 1.09001 * 109.47133 * 149.99917 * 11 2 1 28 28 H 1.08999 * 109.47221 * 30.00327 * 11 2 1 29 29 H 1.08999 * 109.47413 * 300.00431 * 12 11 2 30 30 H 1.09005 * 109.46683 * 60.00455 * 12 11 2 31 31 H 1.09003 * 109.47155 * 93.03385 * 14 13 12 32 32 H 1.08998 * 109.47106 * 213.03610 * 14 13 12 33 33 H 1.09003 * 109.47079 * 333.03360 * 14 13 12 34 34 H 1.09000 * 109.47004 * 60.70355 * 18 17 15 35 35 H 1.09007 * 109.46784 * 180.70039 * 18 17 15 36 36 H 1.08996 * 109.47766 * 300.69691 * 18 17 15 37 37 H 1.09001 * 110.48894 * 335.78198 * 19 17 15 38 38 H 1.09003 * 110.48697 * 98.42528 * 19 17 15 39 39 H 1.09000 * 110.71477 * 279.57500 * 20 19 17 40 40 H 1.08995 * 110.92301 * 156.29703 * 20 19 17 41 41 H 1.09004 * 110.48612 * 203.40619 * 21 20 19 42 42 H 1.08993 * 110.48804 * 80.76190 * 21 20 19 43 43 H 1.09002 * 110.03243 * 238.57165 * 22 17 15 44 44 H 1.08999 * 110.03158 * 359.94962 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1567 1.2280 -0.3879 5 6 1.5493 2.3340 0.4985 6 7 0.3842 2.2566 1.1059 7 14 2.3950 3.9885 0.3074 8 1 1.9681 4.6183 -0.9679 9 1 2.0222 4.8692 1.4434 10 1 3.8670 3.7935 0.2945 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7097 1.4432 13 7 3.1846 -2.9788 1.4437 14 6 2.4516 -4.2472 1.4445 15 6 4.5324 -2.9792 1.4436 16 8 5.1391 -1.9337 1.3451 17 6 5.2854 -4.2789 1.5659 18 6 4.9119 -5.2110 0.4116 19 6 4.9613 -4.9525 2.9152 20 6 6.3047 -5.5884 3.3539 21 6 7.3458 -4.5330 2.9052 22 6 6.8009 -4.0125 1.5591 23 1 -0.3634 0.0903 1.0237 24 1 -0.3634 0.8412 -0.5901 25 1 -0.3633 -0.9318 -0.4336 26 1 -0.0355 3.0589 1.4539 27 1 3.1499 -1.1386 -0.5133 28 1 1.6085 -2.0286 -0.5130 29 1 3.0416 -0.9499 1.9567 30 1 1.5001 -1.8399 1.9571 31 1 2.3168 -4.5895 0.4184 32 1 3.0159 -4.9925 2.0050 33 1 1.4769 -4.1033 1.9106 34 1 5.1787 -4.7417 -0.5354 35 1 5.4517 -6.1523 0.5154 36 1 3.8392 -5.4033 0.4323 37 1 4.6350 -4.2101 3.6436 38 1 4.1992 -5.7209 2.7847 39 1 6.4688 -6.5356 2.8402 40 1 6.3356 -5.7262 4.4346 41 1 8.3232 -4.9957 2.7678 42 1 7.4051 -3.7227 3.6317 43 1 7.2705 -4.5481 0.7340 44 1 6.9917 -2.9433 1.4665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732587060.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:45 Heat of formation + Delta-G solvation = -32.252102 kcal Electronic energy + Delta-G solvation = -21771.276200 eV Core-core repulsion = 18723.581148 eV Total energy + Delta-G solvation = -3047.695052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70292 -38.59639 -37.68654 -36.51638 -33.62311 -32.33907 -30.15434 -29.45709 -27.95027 -27.84177 -26.33967 -25.34027 -22.78121 -21.64525 -21.57467 -19.57548 -18.84260 -17.78118 -17.28805 -16.98170 -16.22928 -16.10064 -15.73275 -15.33269 -15.22087 -14.87107 -14.42809 -14.30361 -13.92937 -13.85223 -13.50493 -13.29309 -13.12111 -12.99793 -12.83127 -12.67020 -12.52997 -12.44252 -12.11456 -12.07338 -11.96836 -11.72148 -11.65026 -11.61583 -11.48864 -11.36539 -10.71527 -10.54210 -9.73519 -8.77759 -7.88613 -5.38896 1.40414 1.41860 1.51633 1.67920 2.06067 2.47568 3.25627 3.41526 3.57758 3.73195 3.78339 3.98603 4.20130 4.27832 4.38208 4.42923 4.45254 4.51712 4.55334 4.58443 4.69023 4.78670 4.82470 4.83589 4.93572 4.96355 4.99408 5.03751 5.11393 5.14400 5.18032 5.24546 5.31442 5.36224 5.42667 5.48337 5.56182 5.64654 5.71427 6.29421 6.51499 7.11936 7.25823 7.81258 8.22829 9.13961 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.004635 C = 0.004229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.276410 B = 6039.476247 C = 6619.599226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.618 5.618 3 C -0.267 4.267 4 H 0.054 0.946 5 C -0.045 4.045 6 N -0.934 5.934 7 Si 0.966 3.034 8 H -0.278 1.278 9 H -0.287 1.287 10 H -0.280 1.280 11 C 0.151 3.849 12 C 0.113 3.887 13 N -0.609 5.609 14 C 0.057 3.943 15 C 0.506 3.494 16 O -0.593 6.593 17 C -0.077 4.077 18 C -0.149 4.149 19 C -0.112 4.112 20 C -0.113 4.113 21 C -0.124 4.124 22 C -0.120 4.120 23 H 0.009 0.991 24 H 0.018 0.982 25 H 0.035 0.965 26 H 0.250 0.750 27 H 0.021 0.979 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.048 0.952 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.046 0.954 43 H 0.083 0.917 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.266 -22.772 2.864 24.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.342 5.342 3 C -0.397 4.397 4 H 0.071 0.929 5 C -0.240 4.240 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.205 1.205 9 H -0.213 1.213 10 H -0.205 1.205 11 C 0.024 3.976 12 C -0.012 4.012 13 N -0.341 5.341 14 C -0.084 4.084 15 C 0.295 3.705 16 O -0.474 6.474 17 C -0.080 4.080 18 C -0.205 4.205 19 C -0.149 4.149 20 C -0.150 4.150 21 C -0.162 4.162 22 C -0.158 4.158 23 H 0.027 0.973 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.098 0.902 34 H 0.063 0.937 35 H 0.113 0.887 36 H 0.107 0.893 37 H 0.067 0.933 38 H 0.126 0.874 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.433 -22.103 2.859 23.494 hybrid contribution 0.262 1.904 0.002 1.922 sum 7.694 -20.199 2.860 21.804 Atomic orbital electron populations 1.20609 0.81782 0.96227 0.97977 1.44141 1.02569 1.01262 1.86209 1.19396 0.98772 0.87456 1.34065 0.92854 1.25768 0.98269 1.01744 0.98228 1.70188 1.17939 1.27998 1.41905 0.85289 0.78033 0.79939 0.77335 1.20474 1.21272 1.20519 1.21107 0.94834 0.87256 0.94444 1.21979 0.95105 0.84477 0.99664 1.47988 1.05663 1.07895 1.72535 1.22608 0.97921 0.84427 1.03449 1.21521 0.82384 0.91921 0.74665 1.90672 1.68700 1.36331 1.51654 1.21439 0.95486 0.91406 0.99660 1.22243 1.04389 0.98933 0.94982 1.22592 0.99758 0.99578 0.92993 1.22506 0.92454 0.98396 1.01652 1.22361 0.99856 0.98481 0.95454 1.22255 0.92634 1.01475 0.99459 0.97258 0.96363 0.94660 0.94017 0.96088 0.91601 0.94941 0.90620 0.90708 0.87562 0.90210 0.93699 0.88673 0.89269 0.93266 0.87361 0.88843 0.90362 0.89815 0.93508 0.89872 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.02 9.00 127.77 1.15 10.17 16 2 N -0.62 -33.30 2.92 -726.95 -2.13 -35.42 16 3 C -0.27 -16.04 9.66 84.03 0.81 -15.23 16 4 H 0.05 3.30 7.84 -2.91 -0.02 3.28 16 5 C -0.04 -2.66 5.20 84.86 0.44 -2.22 16 6 N -0.93 -56.88 10.52 21.65 0.23 -56.65 16 7 Si 0.97 48.20 29.56 68.60 2.03 50.23 16 8 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 9 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 10 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 11 C 0.15 6.77 6.03 86.38 0.52 7.29 16 12 C 0.11 4.68 5.73 86.38 0.50 5.18 16 13 N -0.61 -19.21 2.87 -846.75 -2.43 -21.64 16 14 C 0.06 1.08 8.71 127.77 1.11 2.19 16 15 C 0.51 17.41 6.34 87.66 0.56 17.96 16 16 O -0.59 -27.58 14.84 -3.04 -0.05 -27.63 16 17 C -0.08 -1.74 0.61 -52.21 -0.03 -1.77 16 18 C -0.15 -2.40 7.83 71.98 0.56 -1.84 16 19 C -0.11 -1.88 4.68 31.70 0.15 -1.73 16 20 C -0.11 -1.51 6.91 31.91 0.22 -1.29 16 21 C -0.12 -2.30 6.83 31.67 0.22 -2.08 16 22 C -0.12 -2.88 6.05 31.32 0.19 -2.69 16 23 H 0.01 0.50 7.34 -2.39 -0.02 0.48 16 24 H 0.02 0.98 7.29 -2.39 -0.02 0.96 16 25 H 0.03 1.47 7.84 -2.39 -0.02 1.45 16 26 H 0.25 14.72 8.31 -92.71 -0.77 13.94 16 27 H 0.02 1.03 8.04 -2.39 -0.02 1.01 16 28 H 0.07 2.51 7.86 -2.39 -0.02 2.49 16 29 H 0.03 1.65 7.50 -2.39 -0.02 1.63 16 30 H 0.08 2.95 7.87 -2.38 -0.02 2.93 16 31 H 0.07 1.19 7.03 -2.39 -0.02 1.17 16 32 H 0.11 1.42 3.38 -2.39 -0.01 1.41 16 33 H 0.08 1.39 7.86 -2.39 -0.02 1.37 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.00 8.14 -2.38 -0.02 0.98 16 36 H 0.09 1.16 4.21 -2.39 -0.01 1.15 16 37 H 0.05 1.05 7.85 -2.39 -0.02 1.04 16 38 H 0.11 1.13 6.06 -2.39 -0.01 1.12 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.08 1.66 7.67 -2.39 -0.02 1.64 16 44 H 0.05 1.55 6.39 -2.39 -0.02 1.54 16 Total: -1.00 -76.99 334.82 5.01 -71.98 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.96 Total: 5.18 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 6.40 Total: 13.95 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -4.33 Total: -113.71 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -76.99 5.01 -71.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732587060.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.727 kcal (2) G-P(sol) polarization free energy of solvation -76.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds