Wall clock time and date at job start Mon Mar 30 2020 01:09:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 5 5 C 1.50706 * 109.46573 * 299.99925 * 4 2 1 6 6 H 1.07995 * 120.00167 * 359.72054 * 5 4 2 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99350 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 89.99430 * 9 7 5 11 11 H 1.48494 * 109.47031 * 209.99977 * 9 7 5 12 12 H 1.48504 * 109.46680 * 329.99678 * 9 7 5 13 13 C 1.53006 * 109.46943 * 240.00224 * 2 1 3 14 14 N 1.46896 * 109.47501 * 60.00213 * 13 2 1 15 15 C 1.46895 * 111.00306 * 179.97438 * 14 13 2 16 16 H 1.09002 * 109.21496 * 325.60772 * 15 14 13 17 17 C 1.51788 * 109.22383 * 206.25653 * 15 14 13 18 18 C 1.51807 * 113.82725 * 172.87738 * 17 15 14 19 19 C 1.52986 * 110.87814 * 66.96311 * 18 17 15 20 20 N 1.47190 * 108.66603 * 273.55864 * 19 18 17 21 21 C 1.33375 * 120.43133 * 71.99374 * 20 19 18 22 22 O 1.21280 * 119.89080 * 179.65219 * 21 20 19 23 23 C 1.51426 * 120.21295 * 359.68073 * 21 20 19 24 24 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 25 25 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 26 26 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 29 29 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 30 30 H 1.09000 * 109.47486 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.47362 * 59.99268 * 4 2 1 32 32 H 0.97005 * 119.99656 * 180.02562 * 8 7 5 33 33 H 1.09000 * 109.46866 * 180.02562 * 13 2 1 34 34 H 1.08996 * 109.47261 * 299.99767 * 13 2 1 35 35 H 1.00907 * 110.99811 * 303.95634 * 14 13 2 36 36 H 1.09004 * 108.61823 * 293.97908 * 17 15 14 37 37 H 1.09000 * 108.61698 * 51.73800 * 17 15 14 38 38 H 1.08997 * 109.17740 * 306.61145 * 18 17 15 39 39 H 1.09001 * 109.17241 * 187.30448 * 18 17 15 40 40 H 1.09004 * 109.60469 * 153.80981 * 19 18 17 41 41 H 1.08998 * 109.60986 * 33.31483 * 19 18 17 42 42 H 0.96999 * 119.78658 * 251.97408 * 20 19 18 43 43 H 1.09001 * 109.63217 * 169.07942 * 23 21 20 44 44 H 1.09003 * 109.62933 * 48.47970 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5376 -0.0109 2.4797 6 1 0.9205 0.8698 2.3806 7 6 1.8703 -0.4823 3.7319 8 7 1.4324 0.1380 4.8057 9 14 2.9443 -2.0011 3.9033 10 1 4.3720 -1.5952 3.9493 11 1 2.5926 -2.7171 5.1558 12 1 2.7219 -2.8982 2.7410 13 6 2.0399 -0.7212 -1.2493 14 7 1.5504 -0.0287 -2.4487 15 6 2.0218 -0.6945 -3.6704 16 1 3.0195 -1.0979 -3.4969 17 6 2.0826 0.3180 -4.7996 18 6 2.7189 -0.2173 -6.0697 19 6 1.8468 -1.3049 -6.6999 20 7 2.1901 -2.5982 -6.0868 21 6 1.8299 -2.8674 -4.8311 22 8 2.1125 -3.9386 -4.3377 23 6 1.0688 -1.8400 -4.0198 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 1.6667 -0.1935 5.6867 33 1 3.1300 -0.7216 -1.2491 34 1 1.6767 -1.7489 -1.2494 35 1 0.5438 0.0414 -2.4402 36 1 1.0681 0.6438 -5.0298 37 1 2.6541 1.1824 -4.4616 38 1 3.6969 -0.6354 -5.8314 39 1 2.8419 0.5999 -6.7804 40 1 2.0340 -1.3477 -7.7729 41 1 0.7955 -1.0817 -6.5183 42 1 2.6813 -3.2592 -6.5993 43 1 0.6966 -2.2991 -3.1040 44 1 0.2339 -1.4559 -4.6060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602664310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:46 Heat of formation + Delta-G solvation = -58.717465 kcal Electronic energy + Delta-G solvation = -21424.682239 eV Core-core repulsion = 18375.839562 eV Total energy + Delta-G solvation = -3048.842676 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48162 -38.03124 -36.78606 -35.06354 -32.57051 -31.88301 -30.02110 -27.57874 -26.89020 -26.36864 -25.25229 -23.27464 -21.71815 -20.84930 -20.05857 -17.88448 -17.47273 -17.03242 -16.75473 -15.77034 -14.89602 -14.72229 -14.36929 -14.19798 -14.09415 -13.72113 -13.43248 -13.30057 -12.91477 -12.79923 -12.53465 -12.25777 -11.90170 -11.74193 -11.28033 -11.19225 -11.04024 -11.00297 -10.85474 -10.80664 -10.47210 -10.34776 -10.07018 -9.76400 -9.65836 -9.39430 -9.26275 -8.87708 -8.46519 -8.22502 -5.97259 -3.93265 2.47803 3.04703 3.35876 3.43509 3.48482 4.02151 4.42149 4.44021 4.51898 4.59128 4.70268 4.86903 5.01659 5.13935 5.25326 5.36071 5.43547 5.46217 5.58747 5.63387 5.70800 5.77355 5.88024 6.00278 6.05553 6.20754 6.25861 6.42826 6.55200 6.59789 6.70702 6.81006 6.98995 7.08293 7.14360 7.20164 7.27445 7.35737 7.47801 7.58995 7.88386 8.04476 8.62428 9.08486 9.66285 11.15799 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.004225 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.423719 B = 6624.904426 C = 7184.946509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.048 4.048 3 C -0.118 4.118 4 C -0.005 4.005 5 C -0.506 4.506 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.906 5.906 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.266 1.266 13 C 0.065 3.935 14 N -0.675 5.675 15 C 0.096 3.904 16 H 0.076 0.924 17 C -0.112 4.112 18 C -0.140 4.140 19 C 0.107 3.893 20 N -0.727 5.727 21 C 0.521 3.479 22 O -0.551 6.551 23 C -0.171 4.171 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.040 0.960 27 H 0.038 0.962 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.010 0.990 31 H 0.013 0.987 32 H 0.261 0.739 33 H 0.066 0.934 34 H 0.027 0.973 35 H 0.342 0.658 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.398 0.602 43 H 0.098 0.902 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 0.024 -25.189 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.049 4.049 3 C -0.175 4.175 4 C -0.043 4.043 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.546 5.546 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.064 4.064 14 N -0.306 5.306 15 C -0.015 4.015 16 H 0.094 0.906 17 C -0.150 4.150 18 C -0.179 4.179 19 C -0.017 4.017 20 N -0.380 5.380 21 C 0.307 3.693 22 O -0.428 6.428 23 C -0.213 4.213 24 H 0.089 0.911 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.028 0.972 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.045 0.955 35 H 0.162 0.838 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.116 0.884 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.482 0.086 -24.589 24.593 hybrid contribution 0.249 -1.892 0.013 1.909 sum 0.731 -1.806 -24.575 24.652 Atomic orbital electron populations 1.21785 0.95578 1.00513 1.00942 1.20419 0.95095 0.96126 0.93247 1.21617 0.99672 0.95508 1.00688 1.19636 0.95681 0.95688 0.93299 1.21134 1.31661 1.12961 0.88684 0.90417 1.25007 0.95825 0.96676 0.96030 1.69912 1.46242 1.40611 0.97816 0.86865 0.81202 0.84196 0.77531 1.20442 1.21570 1.19102 1.22216 0.99754 0.95044 0.89354 1.60672 1.16674 1.52641 1.00628 1.21214 0.97982 0.90896 0.91392 0.90560 1.21141 1.01757 0.98977 0.93098 1.21832 0.99870 0.98563 0.97672 1.21827 0.99761 0.82592 0.97527 1.45977 1.58831 1.18908 1.14278 1.20542 0.79098 0.87818 0.81824 1.90773 1.56073 1.25650 1.70282 1.22873 0.99914 0.97252 1.01283 0.91119 0.94597 0.94088 0.94252 0.93667 0.92139 0.97174 0.96869 0.92916 0.91552 0.95452 0.83833 0.91885 0.90348 0.91167 0.90332 0.89637 0.90491 0.76581 0.88367 0.89134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 7.89 37.16 0.29 -2.07 16 2 C -0.05 -0.93 0.60 -154.51 -0.09 -1.02 16 3 C -0.12 -2.22 8.06 37.16 0.30 -1.92 16 4 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 5 C -0.51 -14.08 8.20 -34.44 -0.28 -14.36 16 6 H 0.08 2.29 5.92 -52.49 -0.31 1.98 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -27.99 13.96 55.43 0.77 -27.22 16 9 Si 0.87 22.21 27.47 -169.99 -4.67 17.54 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.60 6.54 56.52 0.37 -6.23 16 13 C 0.06 1.06 4.39 -3.82 -0.02 1.05 16 14 N -0.68 -8.69 5.41 -107.35 -0.58 -9.28 16 15 C 0.10 1.04 2.27 -68.30 -0.15 0.89 16 16 H 0.08 0.97 7.49 -51.93 -0.39 0.58 16 17 C -0.11 -0.89 4.85 -27.95 -0.14 -1.03 16 18 C -0.14 -0.83 5.74 -27.34 -0.16 -0.99 16 19 C 0.11 0.55 6.46 -3.67 -0.02 0.53 16 20 N -0.73 -5.94 5.27 -59.90 -0.32 -6.26 16 21 C 0.52 6.34 7.06 -11.25 -0.08 6.26 16 22 O -0.55 -9.41 17.92 5.56 0.10 -9.31 16 23 C -0.17 -1.82 4.89 -27.50 -0.13 -1.95 16 24 H 0.07 1.45 6.62 -51.93 -0.34 1.11 16 25 H 0.04 0.53 6.57 -51.93 -0.34 0.19 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 29 H 0.06 1.28 6.61 -51.93 -0.34 0.93 16 30 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 31 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 33 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 34 H 0.03 0.47 7.36 -51.93 -0.38 0.08 16 35 H 0.34 4.15 6.51 -39.29 -0.26 3.89 16 36 H 0.06 0.44 7.88 -51.93 -0.41 0.03 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.50 8.05 -51.93 -0.42 0.09 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.36 6.71 -51.93 -0.35 0.01 16 42 H 0.40 2.87 8.91 -40.82 -0.36 2.51 16 43 H 0.10 1.24 7.21 -51.93 -0.37 0.86 16 44 H 0.09 0.73 6.77 -51.93 -0.35 0.38 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -33.00 331.86 -7.85 -40.85 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.49 Total: 1.71 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -0.67 Total: -13.04 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: -0.12 Total: -42.75 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.10 Total: -9.31 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.00 -7.85 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602664310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.869 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds