Wall clock time and date at job start Mon Mar 30 2020 01:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09005 * 115.55089 * 29.33196 * 5 4 2 7 7 C 1.53001 * 117.50169 * 243.62357 * 5 4 2 8 8 C 1.52998 * 117.50279 * 174.99812 * 5 4 2 9 9 H 1.09004 * 117.49605 * 359.97438 * 8 5 4 10 10 N 1.46501 * 117.50254 * 214.98293 * 8 5 4 11 11 C 1.34780 * 119.99742 * 155.00092 * 10 8 5 12 12 O 1.21276 * 120.00338 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99733 * 180.02562 * 11 10 8 14 14 H 1.09003 * 109.47026 * 39.99812 * 13 11 10 15 15 N 1.46900 * 109.47232 * 159.99774 * 13 11 10 16 16 C 1.53000 * 109.47234 * 279.99972 * 13 11 10 17 17 C 1.52998 * 109.47307 * 175.00033 * 16 13 11 18 18 C 1.50699 * 109.47263 * 180.02562 * 17 16 13 19 19 H 1.08003 * 120.00170 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00382 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99641 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00307 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47405 * 89.99609 * 22 20 18 24 24 H 1.48498 * 109.47441 * 209.99752 * 22 20 18 25 25 H 1.48505 * 109.47275 * 329.99705 * 22 20 18 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 30 30 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 35 35 H 1.08993 * 117.49813 * 359.97438 * 7 5 4 36 36 H 1.09000 * 117.49679 * 145.02584 * 7 5 4 37 37 H 0.96996 * 120.00005 * 335.00110 * 10 8 5 38 38 H 1.00896 * 110.99785 * 296.04521 * 15 13 11 39 39 H 1.00896 * 110.99734 * 60.00152 * 15 13 11 40 40 H 1.08996 * 109.46828 * 294.99962 * 16 13 11 41 41 H 1.09001 * 109.47007 * 54.99806 * 16 13 11 42 42 H 1.09009 * 109.46889 * 299.99814 * 17 16 13 43 43 H 1.08996 * 109.46982 * 59.99566 * 17 16 13 44 44 H 0.97003 * 119.99699 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.7159 -2.4083 -0.6424 7 6 2.7568 -3.2335 -1.1156 8 6 1.9516 -3.0660 -2.4057 9 1 2.4477 -2.5884 -3.2507 10 7 0.9961 -4.1223 -2.7488 11 6 0.9174 -4.5741 -4.0162 12 8 1.6379 -4.1067 -4.8725 13 6 -0.0659 -5.6602 -4.3692 14 1 -1.0034 -5.4873 -3.8407 15 7 -0.3106 -5.6473 -5.8176 16 6 0.5067 -7.0190 -3.9608 17 6 -0.5405 -8.1077 -4.2040 18 6 0.0233 -9.4459 -3.8012 19 1 1.0281 -9.5133 -3.4110 20 6 -0.7433 -10.5845 -3.9316 21 7 -1.9668 -10.5025 -4.4072 22 14 -0.0443 -12.2433 -3.4329 23 1 -0.3512 -12.5002 -2.0028 24 1 -0.6534 -13.3088 -4.2689 25 1 1.4275 -12.2399 -3.6304 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6053 -0.2617 -2.1370 34 1 3.1263 -0.6443 -1.2952 35 1 3.7830 -2.8663 -1.1119 36 1 2.5755 -4.1296 -0.5221 37 1 0.4201 -4.4964 -2.0639 38 1 -0.7487 -4.7843 -6.1026 39 1 0.5440 -5.8056 -6.3301 40 1 1.3962 -7.2315 -4.5537 41 1 0.7710 -6.9989 -2.9035 42 1 -1.4301 -7.8951 -3.6110 43 1 -0.8048 -8.1277 -5.2613 44 1 -2.5063 -11.3035 -4.4986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691601708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:13 Heat of formation + Delta-G solvation = -50.151246 kcal Electronic energy + Delta-G solvation = -20157.843087 eV Core-core repulsion = 17109.371870 eV Total energy + Delta-G solvation = -3048.471217 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.96277 -38.32960 -35.83832 -35.12514 -32.85693 -32.71420 -30.09380 -27.71558 -27.44500 -26.38345 -23.96421 -22.05064 -21.25735 -20.75837 -20.14317 -19.66574 -17.17065 -16.74424 -16.12918 -15.63170 -15.34036 -14.76392 -14.54798 -14.36007 -14.22400 -13.99876 -13.44393 -13.31862 -12.94215 -12.54388 -12.32895 -12.26110 -12.02902 -11.97023 -11.63263 -11.46688 -11.11751 -10.97333 -10.89620 -10.87154 -10.67300 -10.55409 -10.25621 -10.10892 -9.80015 -9.37427 -8.99985 -8.71616 -8.35713 -8.20989 -5.93935 -3.96076 2.68549 3.13477 3.34452 3.41043 3.44569 3.70535 4.36900 4.49904 4.53786 4.59248 4.73832 4.81364 4.85419 4.96667 5.07013 5.09415 5.30864 5.39399 5.41573 5.46969 5.51809 5.53057 5.59999 5.61606 5.70094 5.81627 5.82761 5.84012 5.93358 6.07596 6.09650 6.41890 6.50864 6.65734 7.08427 7.37008 7.59028 7.75892 7.79807 7.96093 8.12995 8.30621 8.48349 9.11924 9.67073 11.16985 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.003036 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.995018 B = 9219.761365 C = 9594.383998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.083 4.083 5 C -0.161 4.161 6 H 0.109 0.891 7 C -0.190 4.190 8 C 0.084 3.916 9 H 0.133 0.867 10 N -0.702 5.702 11 C 0.487 3.513 12 O -0.553 6.553 13 C 0.079 3.921 14 H 0.098 0.902 15 N -0.806 5.806 16 C -0.095 4.095 17 C 0.031 3.969 18 C -0.522 4.522 19 H 0.052 0.948 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.889 3.111 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.404 0.596 38 H 0.334 0.666 39 H 0.348 0.652 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.013 0.987 43 H 0.035 0.965 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 21.547 8.828 24.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.121 4.121 5 C -0.180 4.180 6 H 0.127 0.873 7 C -0.229 4.229 8 C -0.023 4.023 9 H 0.150 0.850 10 N -0.352 5.352 11 C 0.273 3.727 12 O -0.431 6.431 13 C -0.037 4.037 14 H 0.116 0.884 15 N -0.334 5.334 16 C -0.133 4.133 17 C -0.006 4.006 18 C -0.561 4.561 19 H 0.070 0.930 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.717 3.283 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.238 0.762 38 H 0.146 0.854 39 H 0.162 0.838 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.734 21.111 8.244 23.378 hybrid contribution 0.744 -0.321 0.762 1.112 sum 6.478 20.790 9.006 23.565 Atomic orbital electron populations 1.21900 0.95211 1.01948 1.01612 1.21077 0.95956 0.95899 0.98339 1.21847 1.00906 0.96064 1.01740 1.21232 1.00615 0.92158 0.98058 1.22935 1.00230 0.92796 1.02054 0.87290 1.23613 0.96884 1.00976 1.01395 1.21693 0.95376 0.92663 0.92573 0.84960 1.45605 1.39873 1.38642 1.11120 1.22803 0.84763 0.83501 0.81589 1.90632 1.44526 1.59498 1.48401 1.21850 0.96527 0.94103 0.91222 0.88397 1.59001 1.31567 1.40393 1.02459 1.21659 1.00717 0.91592 0.99372 1.19018 0.92481 0.90582 0.98519 1.21279 0.99929 0.92431 1.42421 0.92994 1.24995 0.94941 0.99002 0.95435 1.69979 1.08621 1.28756 1.45838 0.86644 0.79219 0.84046 0.78358 1.20786 1.21251 1.19981 0.92704 0.92382 0.92905 0.91095 0.92748 0.92750 0.92699 0.91471 0.91643 0.88225 0.88390 0.76156 0.85436 0.83793 0.92810 0.92856 0.96887 0.94639 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.01 37.16 0.33 -0.70 16 2 C -0.09 -0.65 2.92 -90.62 -0.26 -0.91 16 3 C -0.15 -0.92 9.19 37.16 0.34 -0.57 16 4 C -0.08 -0.64 4.96 -26.74 -0.13 -0.77 16 5 C -0.16 -1.40 5.45 -90.62 -0.49 -1.89 16 6 H 0.11 0.91 6.38 -51.93 -0.33 0.58 16 7 C -0.19 -1.79 10.10 -26.73 -0.27 -2.06 16 8 C 0.08 0.95 6.15 -67.93 -0.42 0.53 16 9 H 0.13 1.71 7.40 -51.93 -0.38 1.32 16 10 N -0.70 -8.89 5.57 -53.80 -0.30 -9.19 16 11 C 0.49 7.72 7.07 -10.98 -0.08 7.64 16 12 O -0.55 -10.27 15.82 5.56 0.09 -10.18 16 13 C 0.08 1.32 3.15 -68.86 -0.22 1.11 16 14 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 15 N -0.81 -13.67 8.44 -5.65 -0.05 -13.72 16 16 C -0.10 -1.92 4.78 -26.73 -0.13 -2.05 16 17 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 18 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 19 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.41 6.41 -51.93 -0.33 0.08 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.48 7.88 -51.92 -0.41 0.08 16 35 H 0.10 0.85 8.03 -51.93 -0.42 0.44 16 36 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.40 4.36 8.83 -40.82 -0.36 4.00 16 38 H 0.33 4.91 9.06 -39.29 -0.36 4.55 16 39 H 0.35 6.00 8.58 -39.29 -0.34 5.66 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -31.93 360.25 -8.93 -40.86 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -7.94 Total: 8.83 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -1.87 Total: -12.57 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: 0.39 Total: -49.14 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.18 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.93 -8.93 -40.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.288 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds