Wall clock time and date at job start Mon Mar 30 2020 01:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.52994 * 109.47404 * 294.99916 * 4 2 1 6 6 H 1.09005 * 115.55089 * 29.33196 * 5 4 2 7 7 C 1.53001 * 117.50169 * 243.62357 * 5 4 2 8 8 C 1.52998 * 117.50279 * 174.99812 * 5 4 2 9 9 H 1.09004 * 117.49605 * 359.97438 * 8 5 4 10 10 N 1.46501 * 117.50254 * 214.98293 * 8 5 4 11 11 C 1.34780 * 119.99742 * 155.00092 * 10 8 5 12 12 O 1.21276 * 120.00338 * 0.02562 * 11 10 8 13 13 C 1.50703 * 119.99733 * 180.02562 * 11 10 8 14 14 H 1.09003 * 109.47026 * 39.99812 * 13 11 10 15 15 N 1.46900 * 109.47232 * 159.99774 * 13 11 10 16 16 C 1.53000 * 109.47234 * 279.99972 * 13 11 10 17 17 C 1.52998 * 109.47307 * 175.00033 * 16 13 11 18 18 C 1.50699 * 109.47263 * 180.02562 * 17 16 13 19 19 H 1.08003 * 120.00170 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00382 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99641 * 359.97438 * 20 18 17 22 22 Si 1.86790 * 120.00307 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47405 * 89.99609 * 22 20 18 24 24 H 1.48498 * 109.47441 * 209.99752 * 22 20 18 25 25 H 1.48505 * 109.47275 * 329.99705 * 22 20 18 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 29 29 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 30 30 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 31 31 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 32 32 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 33 33 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 34 34 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 35 35 H 1.08993 * 117.49813 * 359.97438 * 7 5 4 36 36 H 1.09000 * 117.49679 * 145.02584 * 7 5 4 37 37 H 0.96996 * 120.00005 * 335.00110 * 10 8 5 38 38 H 1.00896 * 110.99785 * 296.04521 * 15 13 11 39 39 H 1.00896 * 110.99734 * 60.00152 * 15 13 11 40 40 H 1.08996 * 109.46828 * 294.99962 * 16 13 11 41 41 H 1.09001 * 109.47007 * 54.99806 * 16 13 11 42 42 H 1.09009 * 109.46889 * 299.99814 * 17 16 13 43 43 H 1.08996 * 109.46982 * 59.99566 * 17 16 13 44 44 H 0.97003 * 119.99699 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6352 -2.1954 -1.1881 6 1 0.7159 -2.4083 -0.6424 7 6 2.7568 -3.2335 -1.1156 8 6 1.9516 -3.0660 -2.4057 9 1 2.4477 -2.5884 -3.2507 10 7 0.9961 -4.1223 -2.7488 11 6 0.9174 -4.5741 -4.0162 12 8 1.6379 -4.1067 -4.8725 13 6 -0.0659 -5.6602 -4.3692 14 1 -1.0034 -5.4873 -3.8407 15 7 -0.3106 -5.6473 -5.8176 16 6 0.5067 -7.0190 -3.9608 17 6 -0.5405 -8.1077 -4.2040 18 6 0.0233 -9.4459 -3.8012 19 1 1.0281 -9.5133 -3.4110 20 6 -0.7433 -10.5845 -3.9316 21 7 -1.9668 -10.5025 -4.4072 22 14 -0.0443 -12.2433 -3.4329 23 1 -0.3512 -12.5002 -2.0028 24 1 -0.6534 -13.3088 -4.2689 25 1 1.4275 -12.2399 -3.6304 26 1 -0.3633 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9562 0.8901 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6053 -0.2617 -2.1370 34 1 3.1263 -0.6443 -1.2952 35 1 3.7830 -2.8663 -1.1119 36 1 2.5755 -4.1296 -0.5221 37 1 0.4201 -4.4964 -2.0639 38 1 -0.7487 -4.7843 -6.1026 39 1 0.5440 -5.8056 -6.3301 40 1 1.3962 -7.2315 -4.5537 41 1 0.7710 -6.9989 -2.9035 42 1 -1.4301 -7.8951 -3.6110 43 1 -0.8048 -8.1277 -5.2613 44 1 -2.5063 -11.3035 -4.4986 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691601708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:12 Heat of formation + Delta-G solvation = -71.418212 kcal Electronic energy + Delta-G solvation = -20158.765292 eV Core-core repulsion = 17109.371870 eV Total energy + Delta-G solvation = -3049.393422 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.14589 -39.20265 -36.84902 -36.42646 -34.81411 -33.79524 -31.92867 -28.54545 -28.04124 -27.85255 -25.65098 -23.12990 -22.32101 -21.95843 -21.29035 -20.57091 -18.67852 -18.10313 -17.64060 -16.95951 -16.48839 -16.13814 -15.79520 -15.53807 -15.17013 -15.01917 -14.70742 -14.28985 -14.02916 -13.82951 -13.62934 -13.43031 -13.09383 -12.95645 -12.79501 -12.55739 -12.51573 -12.37872 -12.24207 -11.77946 -11.68544 -11.65924 -11.60847 -11.46973 -11.26038 -11.03291 -10.94460 -10.48829 -9.70320 -9.62910 -8.13864 -6.24077 1.41223 1.43116 1.44469 1.54012 2.06742 2.44705 2.89038 3.19162 3.53770 3.65770 3.79555 3.82609 3.95552 4.10029 4.11912 4.16530 4.31004 4.31707 4.45227 4.74249 4.77560 4.81764 4.85169 4.90160 4.92859 4.95040 4.98309 5.08337 5.15086 5.24961 5.26707 5.36896 5.46639 5.52986 5.54296 5.57318 5.84572 5.98753 6.08844 6.30486 6.43303 6.52837 6.94634 7.12721 7.44024 8.97380 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027099 B = 0.003036 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.995018 B = 9219.761365 C = 9594.383998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.082 4.082 5 C -0.138 4.138 6 H 0.117 0.883 7 C -0.180 4.180 8 C 0.056 3.944 9 H 0.115 0.885 10 N -0.688 5.688 11 C 0.492 3.508 12 O -0.583 6.583 13 C 0.086 3.914 14 H 0.111 0.889 15 N -0.818 5.818 16 C -0.081 4.081 17 C 0.039 3.961 18 C -0.543 4.543 19 H 0.055 0.945 20 C 0.001 3.999 21 N -0.930 5.930 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.267 1.267 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.414 0.586 38 H 0.347 0.653 39 H 0.345 0.655 40 H 0.041 0.959 41 H 0.067 0.933 42 H -0.005 1.005 43 H 0.006 0.994 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.668 21.996 10.576 25.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.120 4.120 5 C -0.157 4.157 6 H 0.135 0.865 7 C -0.219 4.219 8 C -0.050 4.050 9 H 0.133 0.867 10 N -0.338 5.338 11 C 0.278 3.722 12 O -0.463 6.463 13 C -0.029 4.029 14 H 0.129 0.871 15 N -0.347 5.347 16 C -0.120 4.120 17 C 0.002 3.998 18 C -0.582 4.582 19 H 0.073 0.927 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.785 3.215 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.192 1.192 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.251 0.749 38 H 0.160 0.840 39 H 0.159 0.841 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.013 0.987 43 H 0.024 0.976 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.538 21.587 10.036 24.688 hybrid contribution 0.479 -0.409 0.235 0.672 sum 7.017 21.178 10.272 24.562 Atomic orbital electron populations 1.21911 0.95270 1.01839 1.01744 1.21054 0.95864 0.96234 0.97819 1.21840 1.01133 0.95594 1.01943 1.21251 1.00956 0.91437 0.98358 1.22966 1.00283 0.93110 0.99371 0.86481 1.23680 0.97593 1.01340 0.99250 1.21763 0.96574 0.93568 0.93135 0.86718 1.45458 1.39765 1.38355 1.10205 1.22394 0.84151 0.83327 0.82354 1.90623 1.45567 1.60613 1.49502 1.21644 0.97226 0.92715 0.91359 0.87073 1.58980 1.31625 1.41459 1.02669 1.21386 0.98551 0.91903 1.00113 1.18829 0.93185 0.91706 0.96082 1.21731 1.00194 0.93891 1.42340 0.92654 1.25908 0.95239 1.03186 0.95348 1.70109 1.10006 1.29978 1.46918 0.85528 0.78682 0.78934 0.78364 1.19596 1.20950 1.19163 0.93100 0.92590 0.92304 0.90823 0.92190 0.92420 0.92888 0.92019 0.91164 0.87212 0.88016 0.74913 0.84003 0.84129 0.93992 0.91419 0.98670 0.97604 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.01 71.98 0.65 -1.16 16 2 C -0.09 -1.07 2.92 -10.79 -0.03 -1.10 16 3 C -0.15 -1.56 9.19 71.98 0.66 -0.89 16 4 C -0.08 -1.12 4.96 30.59 0.15 -0.97 16 5 C -0.14 -2.13 5.45 -10.80 -0.06 -2.19 16 6 H 0.12 1.66 6.38 -2.38 -0.02 1.65 16 7 C -0.18 -3.01 10.10 30.60 0.31 -2.70 16 8 C 0.06 1.19 6.15 44.99 0.28 1.47 16 9 H 0.11 2.93 7.40 -2.39 -0.02 2.91 16 10 N -0.69 -16.54 5.57 -442.52 -2.46 -19.00 16 11 C 0.49 15.27 7.07 87.66 0.62 15.89 16 12 O -0.58 -21.59 15.82 -3.02 -0.05 -21.64 16 13 C 0.09 2.86 3.15 44.17 0.14 3.00 16 14 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 15 N -0.82 -27.93 8.44 -171.79 -1.45 -29.38 16 16 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 17 C 0.04 2.04 4.86 29.85 0.15 2.18 16 18 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 19 H 0.06 3.03 7.74 -2.91 -0.02 3.01 16 20 C 0.00 0.06 5.46 84.65 0.46 0.52 16 21 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 22 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.69 6.41 -2.39 -0.02 0.67 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.90 7.88 -2.38 -0.02 0.88 16 35 H 0.11 1.63 8.03 -2.39 -0.02 1.61 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.41 8.16 8.83 -92.71 -0.82 7.34 16 38 H 0.35 10.15 9.06 -89.70 -0.81 9.33 16 39 H 0.35 12.10 8.58 -89.70 -0.77 11.33 16 40 H 0.04 1.77 8.14 -2.39 -0.02 1.76 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 43 H 0.01 0.32 7.75 -2.39 -0.02 0.30 16 44 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -68.24 360.25 0.64 -67.60 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: -1.41 Total: 32.14 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 3.70 Total: -19.75 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -3.63 Total: -104.88 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -68.24 0.64 -67.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691601708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.817 kcal (2) G-P(sol) polarization free energy of solvation -68.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds