Wall clock time and date at job start Mon Mar 30 2020 00:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47005 * 2 1 4 4 C 1.52998 * 109.46804 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47088 * 175.63020 * 4 3 2 6 6 N 1.46498 * 115.54985 * 303.42957 * 5 4 3 7 7 C 1.34775 * 119.99543 * 294.31455 * 6 5 4 8 8 O 1.21578 * 120.00400 * 354.50234 * 7 6 5 9 9 N 1.34786 * 119.99625 * 174.21909 * 7 6 5 10 10 C 1.46497 * 119.99554 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.46797 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47422 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.47597 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99477 * 359.97438 * 13 12 11 15 15 C 1.37872 * 119.99943 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00492 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99740 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47189 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46859 * 120.00282 * 17 15 13 20 20 H 1.48494 * 109.47566 * 240.00248 * 17 15 13 21 21 C 1.53006 * 117.49660 * 89.09403 * 5 4 3 22 22 C 1.53000 * 117.49792 * 157.75429 * 5 4 3 23 23 H 1.09004 * 109.47010 * 300.00278 * 1 2 3 24 24 H 1.08999 * 109.47122 * 59.99611 * 1 2 3 25 25 H 1.08998 * 109.47356 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46906 * 240.00088 * 2 1 3 27 27 H 1.08996 * 109.46828 * 119.99675 * 2 1 3 28 28 H 1.09001 * 109.47222 * 60.00466 * 3 2 1 29 29 H 1.08999 * 109.47498 * 300.00159 * 3 2 1 30 30 H 1.09005 * 109.47433 * 55.63364 * 4 3 2 31 31 H 1.09002 * 109.47097 * 295.63062 * 4 3 2 32 32 H 0.97000 * 120.00569 * 114.32553 * 6 5 4 33 33 H 0.96996 * 119.99860 * 0.02562 * 9 7 6 34 34 H 1.08994 * 109.47791 * 300.00214 * 10 9 7 35 35 H 1.09003 * 109.47176 * 60.01208 * 10 9 7 36 36 H 1.09007 * 109.47159 * 300.00555 * 11 10 9 37 37 H 1.08997 * 109.47323 * 60.00324 * 11 10 9 38 38 H 1.09007 * 109.46978 * 300.00141 * 12 11 10 39 39 H 1.09002 * 109.47490 * 59.99733 * 12 11 10 40 40 H 0.96992 * 119.99906 * 179.97438 * 16 15 13 41 41 H 1.08999 * 117.49843 * 214.99834 * 21 5 4 42 42 H 1.09003 * 117.49927 * 0.02865 * 21 5 4 43 43 H 1.08998 * 117.50302 * 359.97438 * 22 5 4 44 44 H 1.09002 * 117.49932 * 144.97825 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8808 -0.1093 6 7 3.6047 3.6325 -1.2733 7 6 3.9711 3.2556 -2.5143 8 8 4.7745 2.3554 -2.6640 9 7 3.4426 3.8729 -3.5897 10 6 3.8404 3.4628 -4.9386 11 6 3.1001 4.3165 -5.9702 12 6 3.5150 3.8879 -7.3791 13 6 2.7863 4.7291 -8.3952 14 1 2.0960 5.4927 -8.0687 15 6 3.0011 4.5237 -9.7416 16 7 3.8414 3.5935 -10.1392 17 14 2.0972 5.5660 -11.0011 18 1 1.2154 6.5343 -10.3012 19 1 3.0826 6.3047 -11.8309 20 1 1.2757 4.6879 -11.8724 21 6 4.2948 3.6556 1.1925 22 6 5.4997 3.1665 0.3847 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6767 1.9564 -0.8899 30 1 3.9338 0.8622 -0.8474 31 1 3.9329 0.9980 0.9274 32 1 3.0264 4.4016 -1.1509 33 1 2.7989 4.5886 -3.4703 34 1 4.9151 3.6000 -5.0581 35 1 3.5893 2.4127 -5.0881 36 1 2.0253 4.1797 -5.8510 37 1 3.3516 5.3665 -5.8207 38 1 4.5899 4.0243 -7.4986 39 1 3.2634 2.8379 -7.5284 40 1 3.9921 3.4488 -11.0863 41 1 4.0825 4.7246 1.1828 42 1 4.0731 3.1405 2.1272 43 1 6.0701 2.3300 0.7884 44 1 6.0801 3.9137 -0.1566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892796310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:23 Heat of formation + Delta-G solvation = -42.243905 kcal Electronic energy + Delta-G solvation = -20240.158403 eV Core-core repulsion = 17192.030073 eV Total energy + Delta-G solvation = -3048.128329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.13356 -37.98799 -35.29870 -35.12335 -33.39403 -32.64732 -30.84911 -30.03730 -26.61972 -24.51760 -23.29348 -22.73657 -21.26118 -21.10504 -20.56267 -19.48675 -17.97778 -16.63228 -16.22566 -15.73597 -15.37975 -14.97521 -14.68049 -14.39834 -14.07700 -13.81999 -13.74229 -13.22955 -13.20880 -12.39468 -12.26913 -11.80404 -11.77917 -11.75522 -11.59341 -11.46426 -11.19177 -10.91942 -10.73239 -10.71264 -10.65822 -10.55457 -10.25623 -9.87237 -9.83759 -9.41123 -9.09772 -9.06060 -8.56191 -8.36524 -6.00939 -4.03947 2.75192 3.30419 3.37764 3.37950 3.41425 3.59840 4.29532 4.39244 4.46358 4.62310 4.74374 4.84272 4.96069 5.02957 5.26497 5.34878 5.36785 5.41527 5.55693 5.62412 5.68075 5.73262 5.73700 5.82478 5.84173 5.91204 5.95145 6.01837 6.16664 6.21098 6.25163 6.56029 6.62381 6.64651 6.84510 7.04710 7.11012 7.65377 7.78163 7.98253 8.21188 8.39223 8.83209 9.03054 9.60229 11.10412 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.003082 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.137434 B = 9082.281188 C = 9772.001053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.112 4.112 4 C -0.091 4.091 5 C 0.129 3.871 6 N -0.721 5.721 7 C 0.703 3.297 8 O -0.585 6.585 9 N -0.743 5.743 10 C 0.136 3.864 11 C -0.120 4.120 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.893 5.893 17 Si 0.893 3.107 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.175 4.175 22 C -0.172 4.172 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.395 0.605 33 H 0.393 0.607 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.260 0.740 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 -1.589 24.786 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.129 4.129 5 C 0.041 3.959 6 N -0.377 5.377 7 C 0.403 3.597 8 O -0.462 6.462 9 N -0.397 5.397 10 C 0.013 3.987 11 C -0.158 4.158 12 C -0.014 4.014 13 C -0.560 4.560 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 C -0.213 4.213 22 C -0.211 4.211 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.229 0.771 33 H 0.226 0.774 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.070 0.930 41 H 0.115 0.885 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.553 -2.529 24.435 24.698 hybrid contribution -0.998 1.343 -0.732 1.826 sum -3.551 -1.186 23.703 23.997 Atomic orbital electron populations 1.21768 0.95965 1.01480 1.01721 1.21533 0.95789 0.97015 1.01973 1.21498 0.94902 0.96646 1.01952 1.21357 0.95621 0.93155 1.02816 1.20298 0.98065 0.92442 0.85122 1.44453 1.55386 1.34172 1.03658 1.15987 0.81226 0.82326 0.80180 1.90906 1.37203 1.32845 1.85210 1.45401 1.47991 1.40517 1.05837 1.21489 0.99585 0.99332 0.78302 1.21886 0.98966 0.98272 0.96687 1.19033 0.97038 0.96993 0.88344 1.21245 1.25068 1.18615 0.91037 0.92616 1.25033 0.95351 0.95423 0.98701 1.69976 1.35489 1.32364 1.15434 0.86530 0.79641 0.80295 0.81487 1.19771 1.21013 1.21002 1.23350 1.03001 1.00432 0.94532 1.23322 0.91436 1.03581 1.02731 0.92954 0.92684 0.92897 0.91909 0.92258 0.92311 0.91882 0.90081 0.91183 0.77110 0.77449 0.92050 0.92001 0.92804 0.92822 0.96258 0.96240 0.92988 0.88550 0.87915 0.88269 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.88 16 2 C -0.13 -1.12 5.93 -26.73 -0.16 -1.28 16 3 C -0.11 -1.05 5.14 -26.73 -0.14 -1.18 16 4 C -0.09 -0.94 5.04 -26.73 -0.13 -1.07 16 5 C 0.13 1.33 1.65 -131.82 -0.22 1.12 16 6 N -0.72 -8.07 4.88 -52.41 -0.26 -8.32 16 7 C 0.70 10.83 8.42 -86.91 -0.73 10.10 16 8 O -0.58 -11.45 15.50 5.30 0.08 -11.37 16 9 N -0.74 -10.93 5.56 -65.23 -0.36 -11.30 16 10 C 0.14 2.46 5.67 -4.04 -0.02 2.44 16 11 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 12 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 13 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 14 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.95 13.29 55.43 0.74 -26.22 16 17 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C -0.18 -1.33 10.16 -26.69 -0.27 -1.60 16 22 C -0.17 -1.72 10.18 -26.69 -0.27 -1.99 16 23 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.68 7.70 -51.93 -0.40 0.28 16 30 H 0.08 1.09 7.35 -51.93 -0.38 0.71 16 31 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.39 3.31 8.85 -40.82 -0.36 2.95 16 33 H 0.39 4.61 8.49 -40.82 -0.35 4.27 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -32.65 363.81 -9.82 -42.47 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.22 Total: 2.55 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.27 Total: -9.84 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.12 Total: -45.84 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.08 Total: -11.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.65 -9.82 -42.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892796310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.229 kcal (2) G-P(sol) polarization free energy of solvation -32.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds