Wall clock time and date at job start Mon Mar 30 2020 01:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 C 1.52995 * 109.47148 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47178 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99781 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00154 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99670 * 180.02562 * 6 5 4 9 9 C 1.53117 * 109.51970 * 179.97438 * 8 6 5 10 10 C 1.53034 * 109.27588 * 182.37544 * 9 8 6 11 11 N 1.46846 * 109.52689 * 59.17989 * 10 9 8 12 12 C 1.46901 * 111.00467 * 174.16153 * 11 10 9 13 13 C 1.50697 * 109.46972 * 64.94028 * 12 11 10 14 14 H 1.07992 * 120.00221 * 354.70589 * 13 12 11 15 15 C 1.37877 * 119.99867 * 174.98547 * 13 12 11 16 16 N 1.31509 * 120.00517 * 179.72943 * 15 13 12 17 17 Si 1.86812 * 119.99861 * 359.72012 * 15 13 12 18 18 H 1.48504 * 109.46398 * 90.00388 * 17 15 13 19 19 H 1.48497 * 109.47048 * 210.00198 * 17 15 13 20 20 H 1.48496 * 109.46972 * 330.00408 * 17 15 13 21 21 C 1.46846 * 111.19666 * 298.26037 * 11 10 9 22 22 C 1.53043 * 109.52705 * 61.73864 * 21 11 10 23 23 H 1.08997 * 109.47213 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47378 * 300.00775 * 1 2 3 25 25 H 1.09002 * 109.46685 * 60.00162 * 1 2 3 26 26 H 1.08996 * 109.46970 * 239.99572 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99307 * 2 1 3 28 28 H 1.09003 * 109.47291 * 59.99268 * 3 2 1 29 29 H 1.09002 * 109.47182 * 299.99533 * 3 2 1 30 30 H 1.09003 * 109.47385 * 59.99616 * 4 3 2 31 31 H 1.08998 * 109.47388 * 300.00145 * 4 3 2 32 32 H 0.96996 * 120.00128 * 0.02562 * 5 4 3 33 33 H 1.08997 * 109.52047 * 300.12343 * 8 6 5 34 34 H 1.09002 * 109.50148 * 62.43599 * 9 8 6 35 35 H 1.08998 * 109.50646 * 302.31875 * 9 8 6 36 36 H 1.09006 * 109.46434 * 299.16588 * 10 9 8 37 37 H 1.09003 * 109.45468 * 179.19093 * 10 9 8 38 38 H 1.09003 * 109.47020 * 304.94382 * 12 11 10 39 39 H 1.08998 * 109.46818 * 184.94223 * 12 11 10 40 40 H 0.97003 * 120.00586 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.46431 * 181.75597 * 21 11 10 42 42 H 1.09001 * 109.46282 * 301.72122 * 21 11 10 43 43 H 1.08994 * 109.50185 * 180.87989 * 22 21 11 44 44 H 1.08996 * 109.49882 * 60.75716 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3835 3.0699 0.0010 7 8 6.1715 2.1481 0.0028 8 6 5.8858 4.4908 0.0009 9 6 7.4170 4.4921 0.0027 10 6 7.9209 5.9359 0.0625 11 7 7.4116 6.5835 1.2781 12 6 7.9864 7.9257 1.4399 13 6 7.5213 8.8106 0.3123 14 1 6.9350 8.3950 -0.4937 15 6 7.8492 10.1498 0.3069 16 7 7.4479 10.9211 -0.6798 17 14 8.8634 10.8688 1.7012 18 1 10.3067 10.7689 1.3660 19 1 8.4978 12.2950 1.8949 20 1 8.5920 10.1141 2.9509 21 6 5.9441 6.6363 1.2765 22 6 5.3811 5.2134 1.2530 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8891 31 1 3.9330 0.9288 0.8908 32 1 3.4280 3.5610 -0.0003 33 1 5.5218 5.0058 -0.8881 34 1 7.7823 4.0165 -0.9075 35 1 7.7804 3.9435 0.8717 36 1 7.5686 6.4801 -0.8137 37 1 9.0108 5.9396 0.0785 38 1 9.0743 7.8592 1.4246 39 1 7.6615 8.3477 2.3909 40 1 7.6789 11.8632 -0.6839 41 1 5.5981 7.1489 2.1741 42 1 5.6010 7.1772 0.3946 43 1 4.2920 5.2532 1.2361 44 1 5.7125 4.6762 2.1416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042133735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:25 Heat of formation + Delta-G solvation = -63.981612 kcal Electronic energy + Delta-G solvation = -20688.387173 eV Core-core repulsion = 17639.316226 eV Total energy + Delta-G solvation = -3049.070947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03024 -37.88344 -36.35121 -33.94646 -33.58349 -31.96693 -30.30609 -29.24947 -27.49812 -24.78770 -23.33631 -22.46525 -21.64374 -21.43265 -20.07855 -19.10832 -16.97837 -16.84312 -16.16498 -16.02624 -15.17766 -14.74758 -14.29170 -14.12794 -14.06502 -13.90269 -13.63808 -13.11462 -12.81051 -12.75553 -12.62829 -12.25926 -11.88042 -11.81802 -11.52170 -11.48484 -11.24294 -11.05093 -10.99672 -10.90679 -10.63046 -10.41755 -10.16230 -9.98348 -9.84325 -9.57812 -9.37688 -9.11014 -8.61551 -7.19474 -6.12526 -4.12425 2.75853 3.17370 3.27152 3.34701 3.38428 4.38279 4.48108 4.56452 4.65937 4.81902 4.92222 5.02015 5.09373 5.17404 5.21021 5.24111 5.30693 5.41885 5.52525 5.57347 5.65331 5.74902 5.76514 5.88305 5.94223 5.97374 6.04440 6.09461 6.29562 6.32918 6.40390 6.46850 6.61277 6.74184 6.87749 6.97383 7.07341 7.48587 7.55272 8.05410 8.12833 8.29417 8.42856 8.89367 9.50646 11.00314 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036634 B = 0.003253 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.137793 B = 8605.904477 C = 8954.419118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.118 3.882 5 N -0.736 5.736 6 C 0.521 3.479 7 O -0.542 6.542 8 C -0.106 4.106 9 C -0.093 4.093 10 C 0.060 3.940 11 N -0.535 5.535 12 C 0.151 3.849 13 C -0.550 4.550 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.900 5.900 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.263 1.263 21 C 0.064 3.936 22 C -0.104 4.104 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.401 0.599 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.068 0.932 38 H 0.024 0.976 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.068 0.932 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.728 -17.501 1.857 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.170 4.170 4 C -0.006 4.006 5 N -0.389 5.389 6 C 0.308 3.692 7 O -0.419 6.419 8 C -0.128 4.128 9 C -0.131 4.131 10 C -0.068 4.068 11 N -0.259 5.259 12 C 0.025 3.975 13 C -0.589 4.589 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.538 5.538 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.187 1.187 21 C -0.064 4.064 22 C -0.142 4.142 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.235 0.765 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.997 -18.282 2.198 21.448 hybrid contribution -0.105 1.466 -0.165 1.479 sum -11.102 -16.816 2.034 20.252 Atomic orbital electron populations 1.21768 0.95537 1.01743 1.01951 1.21435 0.96069 0.95995 1.02487 1.21839 0.94304 0.97997 1.02896 1.21329 0.93541 0.83494 1.02211 1.46084 1.07541 1.08576 1.76684 1.20940 0.81686 0.91934 0.74638 1.90664 1.55374 1.46689 1.49168 1.21427 0.98827 0.91544 1.00968 1.21433 0.91766 0.97468 1.02477 1.21928 0.99523 0.92446 0.92910 1.62376 1.05890 1.21695 1.35938 1.20210 0.95110 0.85233 0.96974 1.21696 1.35063 0.93852 1.08281 0.90752 1.24977 0.95339 0.97114 0.95675 1.69924 1.46077 1.06070 1.31757 0.86801 0.80856 0.78351 0.83435 1.20192 1.21347 1.18735 1.21846 0.89342 0.93534 1.01720 1.21621 0.98929 0.97313 0.96375 0.92647 0.92642 0.92656 0.91698 0.91674 0.91194 0.91240 0.91761 0.91701 0.76494 0.88827 0.91781 0.91022 0.93915 0.91350 0.95752 0.95081 0.92688 0.91343 0.93466 0.92096 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.48 16 2 C -0.12 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.13 -0.89 5.33 -26.73 -0.14 -1.04 16 4 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 5 N -0.74 -7.91 5.46 -60.29 -0.33 -8.24 16 6 C 0.52 7.48 7.16 -10.98 -0.08 7.40 16 7 O -0.54 -9.70 15.98 5.56 0.09 -9.61 16 8 C -0.11 -1.55 2.59 -91.65 -0.24 -1.79 16 9 C -0.09 -1.54 4.68 -26.65 -0.12 -1.67 16 10 C 0.06 1.16 5.12 -3.84 -0.02 1.14 16 11 N -0.54 -11.00 4.86 -236.11 -1.15 -12.15 16 12 C 0.15 3.60 4.22 -4.98 -0.02 3.58 16 13 C -0.55 -15.00 8.27 -34.44 -0.28 -15.28 16 14 H 0.07 2.19 6.11 -52.49 -0.32 1.87 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 17 Si 0.88 21.20 27.57 -169.99 -4.69 16.52 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.26 -6.10 6.40 56.52 0.36 -5.74 16 21 C 0.06 1.18 5.03 -3.83 -0.02 1.16 16 22 C -0.10 -1.49 5.26 -26.65 -0.14 -1.63 16 23 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.40 3.40 7.96 -40.82 -0.32 3.07 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 36 H 0.04 0.90 6.86 -51.93 -0.36 0.54 16 37 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 38 H 0.02 0.58 7.77 -51.93 -0.40 0.18 16 39 H 0.03 0.75 6.84 -51.93 -0.35 0.39 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 42 H 0.05 0.96 6.73 -51.93 -0.35 0.61 16 43 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -31.59 343.26 -9.12 -40.71 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -8.01 Total: 0.38 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.98 Total: -6.49 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.70 Total: -46.68 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.69 Total: 16.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.59 -9.12 -40.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042133735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.271 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds