Wall clock time and date at job start Mon Mar 30 2020 01:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47174 * 2 1 4 4 C 1.52995 * 109.47148 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47178 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99781 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00154 * 359.97438 * 6 5 4 8 8 C 1.50707 * 119.99670 * 180.02562 * 6 5 4 9 9 C 1.53117 * 109.51970 * 179.97438 * 8 6 5 10 10 C 1.53034 * 109.27588 * 182.37544 * 9 8 6 11 11 N 1.46846 * 109.52689 * 59.17989 * 10 9 8 12 12 C 1.46901 * 111.00467 * 174.16153 * 11 10 9 13 13 C 1.50697 * 109.46972 * 64.94028 * 12 11 10 14 14 H 1.07992 * 120.00221 * 354.70589 * 13 12 11 15 15 C 1.37877 * 119.99867 * 174.98547 * 13 12 11 16 16 N 1.31509 * 120.00517 * 179.72943 * 15 13 12 17 17 Si 1.86812 * 119.99861 * 359.72012 * 15 13 12 18 18 H 1.48504 * 109.46398 * 90.00388 * 17 15 13 19 19 H 1.48497 * 109.47048 * 210.00198 * 17 15 13 20 20 H 1.48496 * 109.46972 * 330.00408 * 17 15 13 21 21 C 1.46846 * 111.19666 * 298.26037 * 11 10 9 22 22 C 1.53043 * 109.52705 * 61.73864 * 21 11 10 23 23 H 1.08997 * 109.47213 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47378 * 300.00775 * 1 2 3 25 25 H 1.09002 * 109.46685 * 60.00162 * 1 2 3 26 26 H 1.08996 * 109.46970 * 239.99572 * 2 1 3 27 27 H 1.09001 * 109.46832 * 119.99307 * 2 1 3 28 28 H 1.09003 * 109.47291 * 59.99268 * 3 2 1 29 29 H 1.09002 * 109.47182 * 299.99533 * 3 2 1 30 30 H 1.09003 * 109.47385 * 59.99616 * 4 3 2 31 31 H 1.08998 * 109.47388 * 300.00145 * 4 3 2 32 32 H 0.96996 * 120.00128 * 0.02562 * 5 4 3 33 33 H 1.08997 * 109.52047 * 300.12343 * 8 6 5 34 34 H 1.09002 * 109.50148 * 62.43599 * 9 8 6 35 35 H 1.08998 * 109.50646 * 302.31875 * 9 8 6 36 36 H 1.09006 * 109.46434 * 299.16588 * 10 9 8 37 37 H 1.09003 * 109.45468 * 179.19093 * 10 9 8 38 38 H 1.09003 * 109.47020 * 304.94382 * 12 11 10 39 39 H 1.08998 * 109.46818 * 184.94223 * 12 11 10 40 40 H 0.97003 * 120.00586 * 180.02562 * 16 15 13 41 41 H 1.08998 * 109.46431 * 181.75597 * 21 11 10 42 42 H 1.09001 * 109.46282 * 301.72122 * 21 11 10 43 43 H 1.08994 * 109.50185 * 180.87989 * 22 21 11 44 44 H 1.08996 * 109.49882 * 60.75716 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3835 3.0699 0.0010 7 8 6.1715 2.1481 0.0028 8 6 5.8858 4.4908 0.0009 9 6 7.4170 4.4921 0.0027 10 6 7.9209 5.9359 0.0625 11 7 7.4116 6.5835 1.2781 12 6 7.9864 7.9257 1.4399 13 6 7.5213 8.8106 0.3123 14 1 6.9350 8.3950 -0.4937 15 6 7.8492 10.1498 0.3069 16 7 7.4479 10.9211 -0.6798 17 14 8.8634 10.8688 1.7012 18 1 10.3067 10.7689 1.3660 19 1 8.4978 12.2950 1.8949 20 1 8.5920 10.1141 2.9509 21 6 5.9441 6.6363 1.2765 22 6 5.3811 5.2134 1.2530 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6768 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8891 31 1 3.9330 0.9288 0.8908 32 1 3.4280 3.5610 -0.0003 33 1 5.5218 5.0058 -0.8881 34 1 7.7823 4.0165 -0.9075 35 1 7.7804 3.9435 0.8717 36 1 7.5686 6.4801 -0.8137 37 1 9.0108 5.9396 0.0785 38 1 9.0743 7.8592 1.4246 39 1 7.6615 8.3477 2.3909 40 1 7.6789 11.8632 -0.6839 41 1 5.5981 7.1489 2.1741 42 1 5.6010 7.1772 0.3946 43 1 4.2920 5.2532 1.2361 44 1 5.7125 4.6762 2.1416 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042133735.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:25 Heat of formation + Delta-G solvation = -85.890060 kcal Electronic energy + Delta-G solvation = -20689.337194 eV Core-core repulsion = 17639.316226 eV Total energy + Delta-G solvation = -3050.020969 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.22644 -39.32795 -37.14029 -35.44333 -34.66191 -33.82298 -31.71580 -30.19009 -29.13398 -26.20872 -24.36415 -23.87210 -23.01060 -22.25332 -21.32892 -20.54809 -18.86898 -18.10490 -17.13034 -16.89704 -16.67741 -15.92972 -15.90755 -15.77874 -15.21655 -14.81558 -14.58390 -14.46533 -14.40274 -14.08777 -13.82675 -13.44095 -13.26258 -12.94613 -12.89240 -12.46263 -12.40492 -12.26521 -12.07538 -12.04014 -11.96501 -11.78419 -11.72278 -11.49429 -11.47048 -11.31677 -10.78067 -10.66527 -10.08479 -8.96002 -8.30264 -6.34991 1.37354 1.38470 1.49995 1.61610 2.20649 2.35086 3.04793 3.31636 3.66388 3.82983 3.88361 3.92103 4.03533 4.20011 4.33639 4.34691 4.45961 4.56382 4.65311 4.67640 4.68989 4.77494 4.83263 4.90330 4.94097 4.95720 5.04176 5.04689 5.08154 5.16727 5.18357 5.26730 5.27110 5.36385 5.37319 5.45664 5.50041 5.56153 6.12311 6.36873 6.46943 6.53904 6.71754 7.24213 7.32252 8.85579 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036634 B = 0.003253 C = 0.003126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.137793 B = 8605.904477 C = 8954.419118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.123 4.123 4 C 0.117 3.883 5 N -0.719 5.719 6 C 0.525 3.475 7 O -0.581 6.581 8 C -0.104 4.104 9 C -0.084 4.084 10 C 0.065 3.935 11 N -0.534 5.534 12 C 0.157 3.843 13 C -0.547 4.547 14 H 0.039 0.961 15 C 0.011 3.989 16 N -0.947 5.947 17 Si 0.946 3.054 18 H -0.270 1.270 19 H -0.285 1.285 20 H -0.244 1.244 21 C 0.063 3.937 22 C -0.091 4.091 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.415 0.585 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.017 0.983 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.070 0.930 42 H 0.021 0.979 43 H 0.097 0.903 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 -18.422 3.319 22.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.160 4.160 4 C -0.006 4.006 5 N -0.372 5.372 6 C 0.312 3.688 7 O -0.461 6.461 8 C -0.125 4.125 9 C -0.122 4.122 10 C -0.064 4.064 11 N -0.258 5.258 12 C 0.029 3.971 13 C -0.585 4.585 14 H 0.057 0.943 15 C -0.187 4.187 16 N -0.588 5.588 17 Si 0.770 3.230 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.168 1.168 21 C -0.065 4.065 22 C -0.129 4.129 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.251 0.749 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.039 0.961 43 H 0.116 0.884 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.018 -19.218 3.667 22.961 hybrid contribution 0.136 1.703 -0.699 1.846 sum -11.883 -17.515 2.967 21.373 Atomic orbital electron populations 1.21758 0.94880 1.02111 1.02153 1.21440 0.96590 0.95556 1.02454 1.21780 0.91963 0.98616 1.03682 1.21427 0.95399 0.82351 1.01436 1.45975 1.06538 1.09846 1.74794 1.20735 0.82571 0.91016 0.74475 1.90657 1.56593 1.47478 1.51323 1.21357 0.97415 0.92250 1.01495 1.21290 0.93425 0.95051 1.02421 1.21900 0.99389 0.93772 0.91338 1.62413 1.07336 1.19642 1.36371 1.20085 0.95209 0.86251 0.95506 1.21901 1.33964 0.94416 1.08263 0.94292 1.25892 0.96743 0.97649 0.98386 1.70067 1.48041 1.06530 1.34124 0.85721 0.79109 0.77574 0.80598 1.19520 1.21083 1.16796 1.21908 0.87921 0.96116 1.00561 1.21535 1.00934 0.94236 0.96166 0.92275 0.92398 0.92479 0.91829 0.91733 0.90302 0.90498 0.92634 0.92469 0.74856 0.88241 0.91416 0.91505 0.96466 0.91694 0.95663 0.94717 0.92570 0.91124 0.96060 0.88434 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.91 71.98 0.71 -0.65 16 2 C -0.12 -1.27 5.93 30.60 0.18 -1.09 16 3 C -0.12 -1.35 5.33 30.59 0.16 -1.19 16 4 C 0.12 2.01 5.67 86.38 0.49 2.50 16 5 N -0.72 -13.78 5.46 -463.06 -2.53 -16.31 16 6 C 0.52 14.20 7.16 87.66 0.63 14.83 16 7 O -0.58 -20.22 15.98 -3.02 -0.05 -20.27 16 8 C -0.10 -2.88 2.59 -11.46 -0.03 -2.91 16 9 C -0.08 -2.72 4.68 30.64 0.14 -2.58 16 10 C 0.06 2.50 5.12 86.32 0.44 2.94 16 11 N -0.53 -21.73 4.86 -900.92 -4.38 -26.10 16 12 C 0.16 7.38 4.22 85.56 0.36 7.74 16 13 C -0.55 -30.33 8.27 25.60 0.21 -30.12 16 14 H 0.04 2.39 6.11 -2.91 -0.02 2.37 16 15 C 0.01 0.65 5.47 84.66 0.46 1.11 16 16 N -0.95 -58.20 13.96 21.45 0.30 -57.90 16 17 Si 0.95 43.41 27.57 68.60 1.89 45.30 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.24 -10.41 6.40 99.48 0.64 -9.77 16 21 C 0.06 2.27 5.03 86.33 0.43 2.71 16 22 C -0.09 -2.40 5.26 30.65 0.16 -2.24 16 23 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.06 0.49 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.41 5.70 7.96 -92.71 -0.74 4.96 16 33 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 2.27 8.04 -2.39 -0.02 2.25 16 36 H 0.02 0.75 6.86 -2.38 -0.02 0.73 16 37 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16 38 H 0.03 1.18 7.77 -2.39 -0.02 1.17 16 39 H 0.03 1.62 6.84 -2.39 -0.02 1.60 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.07 2.49 8.12 -2.39 -0.02 2.47 16 42 H 0.02 0.87 6.73 -2.39 -0.02 0.86 16 43 H 0.10 1.90 7.66 -2.39 -0.02 1.88 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -68.92 343.26 -0.25 -69.17 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.15 Total: 15.05 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.36 Total: -8.95 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -6.61 Total: -100.31 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.27 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 1.89 Total: 45.30 kcal Total: -68.92 -0.25 -69.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042133735.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.717 kcal (2) G-P(sol) polarization free energy of solvation -68.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds