Wall clock time and date at job start Mon Mar 30 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 C 1.53001 * 109.47103 * 120.00096 * 2 1 3 5 5 C 1.50703 * 109.47348 * 175.00214 * 4 2 1 6 6 O 1.21278 * 119.99824 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99924 * 179.97438 * 5 4 2 8 8 C 1.47077 * 120.88194 * 179.97438 * 7 5 4 9 9 C 1.53246 * 108.52284 * 128.83612 * 8 7 5 10 10 N 1.46898 * 109.33920 * 53.82904 * 9 8 7 11 11 C 1.46897 * 111.00122 * 172.74589 * 10 9 8 12 12 C 1.52995 * 109.47298 * 170.00105 * 11 10 9 13 13 C 1.50701 * 109.47210 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99966 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99888 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99632 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47254 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46969 * 120.00138 * 17 15 13 20 20 H 1.48501 * 109.47003 * 239.99756 * 17 15 13 21 21 C 1.46897 * 111.27265 * 296.89822 * 10 9 8 22 22 C 1.47081 * 120.88271 * 0.02562 * 7 5 4 23 23 H 1.08999 * 109.47479 * 300.00092 * 1 2 3 24 24 H 1.09005 * 109.46795 * 60.00429 * 1 2 3 25 25 H 1.09000 * 109.47402 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47479 * 239.99908 * 2 1 3 27 27 H 1.09004 * 109.47000 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47308 * 299.99611 * 3 2 1 29 29 H 1.09001 * 109.46995 * 60.00413 * 3 2 1 30 30 H 1.08997 * 109.46974 * 54.99613 * 4 2 1 31 31 H 1.09005 * 109.47036 * 295.00001 * 4 2 1 32 32 H 1.09006 * 109.62659 * 9.13020 * 8 7 5 33 33 H 1.08996 * 109.78951 * 248.64154 * 8 7 5 34 34 H 1.08997 * 109.49034 * 173.79182 * 9 8 7 35 35 H 1.09005 * 109.49043 * 293.87421 * 9 8 7 36 36 H 1.09004 * 109.47340 * 290.00796 * 11 10 9 37 37 H 1.08997 * 109.46806 * 50.00180 * 11 10 9 38 38 H 1.09001 * 109.47025 * 300.00392 * 12 11 10 39 39 H 1.08997 * 109.47132 * 60.00274 * 12 11 10 40 40 H 0.97001 * 119.99705 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.49205 * 303.14494 * 21 10 9 42 42 H 1.08997 * 109.51913 * 183.07577 * 21 10 9 43 43 H 1.08997 * 109.62944 * 350.86779 * 22 7 5 44 44 H 1.08999 * 109.63243 * 111.45177 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3740 0.2405 7 7 4.2149 -1.4313 2.1896 8 6 5.6805 -1.5481 2.1504 9 6 6.2461 -1.0244 3.4749 10 7 5.5969 -1.7239 4.5916 11 6 6.2306 -1.3761 5.8704 12 6 5.3834 -1.9179 7.0235 13 6 6.0332 -1.5605 8.3354 14 1 6.9582 -1.0032 8.3457 15 6 5.4473 -1.9461 9.5225 16 7 4.3217 -2.6261 9.5099 17 14 6.2532 -1.5038 11.1486 18 1 7.5020 -0.7426 10.8913 19 1 5.3227 -0.6704 11.9517 20 1 6.5752 -2.7462 11.8956 21 6 4.1544 -1.4482 4.6268 22 6 3.5031 -1.9898 3.3492 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -1.7198 1.2951 31 1 1.7516 -0.1583 2.1370 32 1 6.0731 -0.9548 1.3246 33 1 5.9641 -2.5922 2.0185 34 1 7.3206 -1.2046 3.5081 35 1 6.0537 0.0456 3.5549 36 1 7.2270 -1.8160 5.9137 37 1 6.3081 -0.2922 5.9546 38 1 4.3870 -1.4779 6.9802 39 1 5.3059 -3.0018 6.9394 40 1 3.9094 -2.8970 10.3451 41 1 3.9912 -0.3724 4.6907 42 1 3.7116 -1.9355 5.4954 43 1 2.4560 -1.6887 3.3160 44 1 3.5748 -3.0773 3.3339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043623469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:12 Heat of formation + Delta-G solvation = -46.582446 kcal Electronic energy + Delta-G solvation = -21057.734786 eV Core-core repulsion = 18009.418324 eV Total energy + Delta-G solvation = -3048.316463 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.26793 -38.13141 -35.72971 -34.83778 -32.95634 -31.33518 -29.85201 -28.52716 -27.22799 -26.47540 -23.94924 -23.62062 -21.73600 -20.40021 -19.89024 -18.69319 -17.19654 -16.49681 -16.04949 -15.60200 -14.84645 -14.80017 -14.57375 -14.46417 -14.17665 -13.92298 -13.75777 -13.34850 -12.63957 -12.47732 -12.37268 -12.21500 -12.03351 -11.92478 -11.55970 -11.27162 -11.17744 -11.01619 -10.99083 -10.95003 -10.83228 -10.73099 -10.55013 -10.01767 -9.62833 -9.42643 -9.15337 -8.62126 -8.40868 -7.80499 -6.06890 -4.08985 2.64651 3.00788 3.27280 3.35132 3.39073 4.29077 4.45509 4.46317 4.61800 4.76117 5.01148 5.11603 5.16248 5.29783 5.31315 5.34321 5.40647 5.43655 5.47736 5.53761 5.55448 5.63020 5.75561 5.81992 5.84554 5.95566 6.00829 6.11253 6.18347 6.21434 6.31685 6.34790 6.36332 6.58106 6.83622 7.31497 7.47861 7.49680 7.67037 7.77173 7.96280 8.19841 8.35725 8.97398 9.55269 11.04494 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030218 B = 0.003540 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.377334 B = 7907.861612 C = 8413.006978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.138 4.138 5 C 0.514 3.486 6 O -0.547 6.547 7 N -0.612 5.612 8 C 0.117 3.883 9 C 0.041 3.959 10 N -0.538 5.538 11 C 0.062 3.938 12 C 0.021 3.979 13 C -0.522 4.522 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.035 3.965 22 C 0.110 3.890 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.026 0.974 40 H 0.260 0.740 41 H 0.032 0.968 42 H 0.108 0.892 43 H 0.085 0.915 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 3.081 -16.551 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.099 4.099 3 C -0.211 4.211 4 C -0.178 4.178 5 C 0.303 3.697 6 O -0.426 6.426 7 N -0.346 5.346 8 C -0.005 4.005 9 C -0.088 4.088 10 N -0.263 5.263 11 C -0.064 4.064 12 C -0.016 4.016 13 C -0.561 4.561 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.094 4.094 22 C -0.013 4.013 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.521 2.743 -17.007 18.090 hybrid contribution 0.292 1.008 1.333 1.697 sum -5.229 3.751 -15.674 16.944 Atomic orbital electron populations 1.21867 0.95014 1.01714 1.01947 1.20859 0.94980 0.96887 0.97167 1.21958 1.03164 0.95023 1.00905 1.21814 0.92191 1.02915 1.00835 1.20709 0.90220 0.76999 0.81739 1.90626 1.70428 1.48186 1.33355 1.48284 1.07691 1.57479 1.21109 1.21685 0.79203 1.01885 0.97758 1.22445 0.99324 0.95934 0.91135 1.62069 1.02459 1.57488 1.04328 1.22339 0.98998 0.97418 0.87672 1.19252 0.94654 0.97088 0.90643 1.21207 1.08533 1.35359 0.90968 0.92688 1.24987 0.94976 0.95074 0.99252 1.69961 1.18089 1.38304 1.26902 0.86529 0.79463 0.78205 0.83764 1.19759 1.21020 1.20936 1.22616 0.89748 0.99016 0.97995 1.22006 0.95712 0.99186 0.84403 0.92574 0.92499 0.92672 0.90568 0.90728 0.93088 0.93381 0.88927 0.88863 0.89231 0.90936 0.89918 0.95040 0.91691 0.96147 0.96187 0.95585 0.92993 0.95016 0.87370 0.89703 0.90381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.08 -0.79 2.57 -90.62 -0.23 -1.02 16 3 C -0.15 -1.62 8.93 37.16 0.33 -1.29 16 4 C -0.14 -1.38 3.54 -27.88 -0.10 -1.47 16 5 C 0.51 6.86 7.42 -10.99 -0.08 6.78 16 6 O -0.55 -8.79 13.42 5.56 0.07 -8.71 16 7 N -0.61 -8.17 3.01 -172.43 -0.52 -8.69 16 8 C 0.12 1.59 6.60 -3.60 -0.02 1.56 16 9 C 0.04 0.60 5.58 -3.70 -0.02 0.58 16 10 N -0.54 -9.30 4.78 -234.29 -1.12 -10.42 16 11 C 0.06 1.27 5.21 -3.83 -0.02 1.25 16 12 C 0.02 0.51 4.22 -27.88 -0.12 0.39 16 13 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 14 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.99 13.29 55.43 0.74 -25.25 16 17 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 C 0.03 0.56 5.04 -3.67 -0.02 0.54 16 22 C 0.11 1.38 6.51 -3.57 -0.02 1.35 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.83 7.96 -51.93 -0.41 0.42 16 27 H 0.07 0.97 5.95 -51.93 -0.31 0.66 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.77 8.00 -51.93 -0.42 0.36 16 31 H 0.09 0.86 7.66 -51.93 -0.40 0.46 16 32 H 0.09 1.22 7.06 -51.93 -0.37 0.86 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.13 8.11 -51.93 -0.42 0.71 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 38 H 0.02 0.51 6.18 -51.93 -0.32 0.19 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.11 1.93 5.73 -51.93 -0.30 1.63 16 43 H 0.08 0.85 6.02 -51.93 -0.31 0.54 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -30.44 341.09 -8.95 -39.39 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.87 Total: -2.39 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -0.37 Total: -5.28 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.90 Total: -44.36 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.07 Total: -8.71 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.44 -8.95 -39.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043623469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.191 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds