Wall clock time and date at job start Mon Mar 30 2020 00:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47110 * 2 1 4 4 C 1.53001 * 109.47103 * 120.00096 * 2 1 3 5 5 C 1.50703 * 109.47348 * 175.00214 * 4 2 1 6 6 O 1.21278 * 119.99824 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99924 * 179.97438 * 5 4 2 8 8 C 1.47077 * 120.88194 * 179.97438 * 7 5 4 9 9 C 1.53246 * 108.52284 * 128.83612 * 8 7 5 10 10 N 1.46898 * 109.33920 * 53.82904 * 9 8 7 11 11 C 1.46897 * 111.00122 * 172.74589 * 10 9 8 12 12 C 1.52995 * 109.47298 * 170.00105 * 11 10 9 13 13 C 1.50701 * 109.47210 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99966 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99888 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99632 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47254 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46969 * 120.00138 * 17 15 13 20 20 H 1.48501 * 109.47003 * 239.99756 * 17 15 13 21 21 C 1.46897 * 111.27265 * 296.89822 * 10 9 8 22 22 C 1.47081 * 120.88271 * 0.02562 * 7 5 4 23 23 H 1.08999 * 109.47479 * 300.00092 * 1 2 3 24 24 H 1.09005 * 109.46795 * 60.00429 * 1 2 3 25 25 H 1.09000 * 109.47402 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47479 * 239.99908 * 2 1 3 27 27 H 1.09004 * 109.47000 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47308 * 299.99611 * 3 2 1 29 29 H 1.09001 * 109.46995 * 60.00413 * 3 2 1 30 30 H 1.08997 * 109.46974 * 54.99613 * 4 2 1 31 31 H 1.09005 * 109.47036 * 295.00001 * 4 2 1 32 32 H 1.09006 * 109.62659 * 9.13020 * 8 7 5 33 33 H 1.08996 * 109.78951 * 248.64154 * 8 7 5 34 34 H 1.08997 * 109.49034 * 173.79182 * 9 8 7 35 35 H 1.09005 * 109.49043 * 293.87421 * 9 8 7 36 36 H 1.09004 * 109.47340 * 290.00796 * 11 10 9 37 37 H 1.08997 * 109.46806 * 50.00180 * 11 10 9 38 38 H 1.09001 * 109.47025 * 300.00392 * 12 11 10 39 39 H 1.08997 * 109.47132 * 60.00274 * 12 11 10 40 40 H 0.97001 * 119.99705 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.49205 * 303.14494 * 21 10 9 42 42 H 1.08997 * 109.51913 * 183.07577 * 21 10 9 43 43 H 1.08997 * 109.62944 * 350.86779 * 22 7 5 44 44 H 1.08999 * 109.63243 * 111.45177 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.8294 1.1890 6 8 4.1450 -0.3740 0.2405 7 7 4.2149 -1.4313 2.1896 8 6 5.6805 -1.5481 2.1504 9 6 6.2461 -1.0244 3.4749 10 7 5.5969 -1.7239 4.5916 11 6 6.2306 -1.3761 5.8704 12 6 5.3834 -1.9179 7.0235 13 6 6.0332 -1.5605 8.3354 14 1 6.9582 -1.0032 8.3457 15 6 5.4473 -1.9461 9.5225 16 7 4.3217 -2.6261 9.5099 17 14 6.2532 -1.5038 11.1486 18 1 7.5020 -0.7426 10.8913 19 1 5.3227 -0.6704 11.9517 20 1 6.5752 -2.7462 11.8956 21 6 4.1544 -1.4482 4.6268 22 6 3.5031 -1.9898 3.3492 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -1.7198 1.2951 31 1 1.7516 -0.1583 2.1370 32 1 6.0731 -0.9548 1.3246 33 1 5.9641 -2.5922 2.0185 34 1 7.3206 -1.2046 3.5081 35 1 6.0537 0.0456 3.5549 36 1 7.2270 -1.8160 5.9137 37 1 6.3081 -0.2922 5.9546 38 1 4.3870 -1.4779 6.9802 39 1 5.3059 -3.0018 6.9394 40 1 3.9094 -2.8970 10.3451 41 1 3.9912 -0.3724 4.6907 42 1 3.7116 -1.9355 5.4954 43 1 2.4560 -1.6887 3.3160 44 1 3.5748 -3.0773 3.3339 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043623469.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:12 Heat of formation + Delta-G solvation = -65.333300 kcal Electronic energy + Delta-G solvation = -21058.547884 eV Core-core repulsion = 18009.418324 eV Total energy + Delta-G solvation = -3049.129561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35041 -39.38910 -36.66260 -36.15946 -34.85764 -32.60705 -31.47442 -29.59397 -27.95214 -27.85412 -25.70699 -24.84420 -22.99535 -21.77479 -21.00198 -19.76988 -18.68279 -18.09025 -17.12052 -16.62889 -16.55048 -16.09992 -15.92310 -15.69429 -15.63241 -14.96858 -14.73994 -14.55730 -14.18153 -13.84810 -13.44577 -13.27387 -13.15550 -13.02123 -12.87349 -12.74808 -12.57914 -12.40188 -12.29086 -12.18262 -11.95104 -11.87682 -11.73131 -11.54889 -11.26343 -11.17677 -10.68030 -10.53349 -9.78137 -9.21240 -8.20288 -6.30193 1.40352 1.41534 1.53790 1.62238 1.97756 2.40542 3.00090 3.13690 3.51841 3.83187 3.94332 3.99479 4.02153 4.14113 4.24010 4.30746 4.34359 4.50699 4.57844 4.64385 4.68290 4.71588 4.71760 4.75323 4.83991 4.86382 4.90091 5.02777 5.05078 5.06185 5.12732 5.29449 5.41330 5.44889 5.50864 5.51992 5.65388 5.77005 6.02725 6.18752 6.30436 6.43742 6.85532 7.16339 7.38543 8.91440 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030218 B = 0.003540 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.377334 B = 7907.861612 C = 8413.006978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.152 4.152 4 C -0.135 4.135 5 C 0.510 3.490 6 O -0.578 6.578 7 N -0.616 5.616 8 C 0.121 3.879 9 C 0.045 3.955 10 N -0.543 5.543 11 C 0.078 3.922 12 C 0.031 3.969 13 C -0.545 4.545 14 H 0.056 0.944 15 C 0.005 3.995 16 N -0.927 5.927 17 Si 0.961 3.039 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.036 3.964 22 C 0.119 3.881 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.023 0.977 36 H 0.065 0.935 37 H 0.016 0.984 38 H 0.006 0.994 39 H -0.001 1.001 40 H 0.264 0.736 41 H 0.024 0.976 42 H 0.085 0.915 43 H 0.116 0.884 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.395 3.226 -16.726 18.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.098 4.098 3 C -0.209 4.209 4 C -0.174 4.174 5 C 0.301 3.699 6 O -0.459 6.459 7 N -0.349 5.349 8 C -0.001 4.001 9 C -0.084 4.084 10 N -0.268 5.268 11 C -0.050 4.050 12 C -0.006 4.006 13 C -0.584 4.584 14 H 0.074 0.926 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.786 3.214 18 H -0.189 1.189 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.093 4.093 22 C -0.003 4.003 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.124 0.876 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.113 0.887 35 H 0.041 0.959 36 H 0.084 0.916 37 H 0.034 0.966 38 H 0.025 0.975 39 H 0.017 0.983 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.103 0.897 43 H 0.134 0.866 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.137 2.887 -17.193 18.483 hybrid contribution 0.485 0.973 1.348 1.731 sum -5.652 3.860 -15.846 17.260 Atomic orbital electron populations 1.21821 0.93034 1.02641 1.02504 1.20850 0.96508 0.95934 0.96524 1.21926 1.01283 0.96077 1.01626 1.21896 0.89541 1.04527 1.01432 1.21331 0.91583 0.75988 0.81020 1.90620 1.71372 1.49311 1.34555 1.48383 1.07634 1.57498 1.21354 1.21613 0.79684 1.02200 0.96648 1.22474 0.99991 0.95190 0.90695 1.62041 1.03258 1.57951 1.03510 1.22002 0.98303 0.96696 0.87969 1.19062 0.94620 0.95245 0.91682 1.21632 1.08803 1.35479 0.92456 0.92595 1.25864 0.95516 0.94886 1.03030 1.70073 1.19376 1.39176 1.28028 0.85452 0.78699 0.78104 0.79104 1.18938 1.20375 1.20369 1.22581 0.89042 0.98483 0.99184 1.21994 0.96801 0.99318 0.82197 0.91941 0.92064 0.91572 0.91958 0.93538 0.92329 0.92735 0.86571 0.87566 0.89333 0.90162 0.88723 0.95850 0.91643 0.96583 0.97549 0.98282 0.92714 0.95729 0.89661 0.86578 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 2 C -0.08 -1.41 2.57 -10.79 -0.03 -1.44 16 3 C -0.15 -3.07 8.93 71.98 0.64 -2.43 16 4 C -0.13 -2.36 3.54 29.85 0.11 -2.25 16 5 C 0.51 12.89 7.42 87.66 0.65 13.54 16 6 O -0.58 -18.32 13.42 -3.02 -0.04 -18.36 16 7 N -0.62 -15.50 3.01 -817.83 -2.46 -17.96 16 8 C 0.12 3.15 6.60 86.35 0.57 3.72 16 9 C 0.05 1.30 5.58 86.39 0.48 1.78 16 10 N -0.54 -18.60 4.78 -895.16 -4.28 -22.88 16 11 C 0.08 3.19 5.21 86.30 0.45 3.64 16 12 C 0.03 1.58 4.22 29.85 0.13 1.70 16 13 C -0.55 -30.34 9.11 25.60 0.23 -30.11 16 14 H 0.06 3.02 7.74 -2.91 -0.02 3.00 16 15 C 0.01 0.31 5.46 84.66 0.46 0.77 16 16 N -0.93 -54.45 13.29 21.45 0.28 -54.16 16 17 Si 0.96 43.40 29.54 68.60 2.03 45.43 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 21 C 0.04 1.13 5.04 86.40 0.44 1.57 16 22 C 0.12 2.78 6.51 86.37 0.56 3.34 16 23 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 1.29 7.96 -2.39 -0.02 1.27 16 27 H 0.05 1.21 5.95 -2.39 -0.01 1.20 16 28 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.12 1.52 8.00 -2.39 -0.02 1.50 16 31 H 0.11 1.63 7.66 -2.38 -0.02 1.62 16 32 H 0.09 2.35 7.06 -2.38 -0.02 2.34 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 2.48 8.11 -2.39 -0.02 2.46 16 35 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.02 0.66 8.08 -2.39 -0.02 0.65 16 38 H 0.01 0.33 6.18 -2.39 -0.01 0.32 16 39 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 3.11 5.73 -2.39 -0.01 3.09 16 43 H 0.12 1.98 6.02 -2.39 -0.01 1.97 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -65.77 341.09 1.83 -63.94 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.95 Total: 11.32 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.35 Total: -7.33 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -6.45 Total: -95.01 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.04 Total: -18.36 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.77 1.83 -63.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043623469.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.394 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds