Wall clock time and date at job start Mon Mar 30 2020 01:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47567 * 2 1 4 4 C 1.53001 * 109.47120 * 120.00329 * 2 1 3 5 5 N 1.46505 * 109.47130 * 64.99764 * 4 2 1 6 6 C 1.34775 * 119.99759 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99858 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00073 * 179.97438 * 6 5 4 9 9 C 1.53112 * 109.52531 * 180.02562 * 8 6 5 10 10 C 1.53031 * 109.28065 * 177.56146 * 9 8 6 11 11 N 1.46850 * 109.52191 * 300.81936 * 10 9 8 12 12 C 1.46904 * 111.00104 * 185.83867 * 11 10 9 13 13 C 1.50697 * 109.46891 * 170.00174 * 12 11 10 14 14 H 1.07991 * 120.00449 * 359.72239 * 13 12 11 15 15 C 1.37885 * 119.99686 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.46846 * 111.19767 * 61.74317 * 11 10 9 22 22 C 1.53043 * 109.52316 * 298.25581 * 21 11 10 23 23 H 1.09004 * 109.46885 * 299.99758 * 1 2 3 24 24 H 1.08996 * 109.47230 * 59.99747 * 1 2 3 25 25 H 1.08997 * 109.47535 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46885 * 240.00242 * 2 1 3 27 27 H 1.08997 * 109.47519 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47052 * 300.00362 * 3 2 1 29 29 H 1.09004 * 109.46821 * 60.00203 * 3 2 1 30 30 H 1.09004 * 109.47058 * 304.99779 * 4 2 1 31 31 H 1.09000 * 109.47083 * 184.99558 * 4 2 1 32 32 H 0.96996 * 119.99788 * 0.02562 * 5 4 2 33 33 H 1.08998 * 109.51635 * 59.87395 * 8 6 5 34 34 H 1.09007 * 109.50366 * 57.61598 * 9 8 6 35 35 H 1.09001 * 109.50045 * 297.50269 * 9 8 6 36 36 H 1.08997 * 109.46601 * 180.80276 * 10 9 8 37 37 H 1.09006 * 109.45698 * 60.82720 * 10 9 8 38 38 H 1.08998 * 109.47046 * 49.99675 * 12 11 10 39 39 H 1.09001 * 109.47014 * 289.99875 * 12 11 10 40 40 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.46465 * 58.27194 * 21 11 10 42 42 H 1.08998 * 109.46421 * 178.24606 * 21 11 10 43 43 H 1.08999 * 109.50530 * 299.24210 * 22 21 11 44 44 H 1.08996 * 109.50505 * 179.12322 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6523 -2.1329 1.1905 6 6 1.9964 -2.9684 2.1906 7 8 2.6264 -2.5514 3.1393 8 6 1.5972 -4.4203 2.1305 9 6 2.1071 -5.1434 3.3801 10 6 1.6468 -6.6023 3.3429 11 7 0.1801 -6.6530 3.2905 12 6 -0.3028 -8.0366 3.3932 13 6 -1.7978 -8.0339 3.5828 14 1 -2.3348 -7.0981 3.6275 15 6 -2.4793 -9.2263 3.7055 16 7 -1.8252 -10.3660 3.6515 17 14 -4.3314 -9.2228 3.9483 18 1 -5.0042 -9.2607 2.6250 19 1 -4.7290 -10.4146 4.7400 20 1 -4.7334 -7.9905 4.6729 21 6 -0.3304 -6.0063 2.0750 22 6 0.0708 -4.5294 2.0744 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6053 -0.2618 2.1370 31 1 3.1263 -0.6445 1.2951 32 1 1.1488 -2.4664 0.4315 33 1 2.0288 -4.8802 1.2415 34 1 1.7067 -4.6580 4.2703 35 1 3.1962 -5.1058 3.4032 36 1 1.9962 -7.1164 4.2383 37 1 2.0588 -7.0906 2.4597 38 1 0.1707 -8.5244 4.2451 39 1 -0.0534 -8.5772 2.4801 40 1 -2.3047 -11.2049 3.7374 41 1 0.0909 -6.4974 1.1979 42 1 -1.4171 -6.0873 2.0496 43 1 -0.3615 -4.0344 2.9439 44 1 -0.2949 -4.0533 1.1647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049753879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:27 Heat of formation + Delta-G solvation = -63.622235 kcal Electronic energy + Delta-G solvation = -20866.140891 eV Core-core repulsion = 17817.085527 eV Total energy + Delta-G solvation = -3049.055363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.09961 -37.90846 -36.75178 -33.74887 -33.25097 -31.89523 -30.32639 -27.58863 -27.53923 -26.26929 -24.09473 -22.57765 -21.54639 -20.79731 -20.17625 -19.16383 -17.07592 -16.36832 -16.19411 -15.73685 -15.06462 -14.74890 -14.33352 -14.21189 -14.08421 -13.67612 -13.35770 -13.29572 -12.95705 -12.73511 -12.50733 -12.28576 -11.99640 -11.79050 -11.49765 -11.39158 -11.27991 -11.08141 -11.01764 -10.77144 -10.66410 -10.47250 -10.35355 -10.09203 -9.82310 -9.46466 -9.14665 -9.10930 -8.43321 -7.20549 -6.02216 -4.03560 2.73177 3.16412 3.31595 3.38170 3.42707 4.39701 4.42773 4.51671 4.66364 4.78730 4.88274 5.06657 5.17309 5.18600 5.26215 5.33315 5.33523 5.44975 5.48152 5.57627 5.61721 5.69442 5.73426 5.86941 5.89570 5.95518 5.98857 6.02784 6.14945 6.23901 6.37360 6.46292 6.55121 6.66874 6.74278 7.32671 7.36094 7.45972 7.81509 8.11547 8.22623 8.27220 8.57190 9.04373 9.60705 11.08671 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.003601 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.649434 B = 7772.905650 C = 8524.704331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.145 4.145 4 C 0.123 3.877 5 N -0.734 5.734 6 C 0.520 3.480 7 O -0.541 6.541 8 C -0.106 4.106 9 C -0.092 4.092 10 C 0.055 3.945 11 N -0.537 5.537 12 C 0.193 3.807 13 C -0.507 4.507 14 H 0.063 0.937 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.897 3.103 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.067 3.933 22 C -0.105 4.105 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.400 0.600 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.021 0.979 38 H 0.030 0.970 39 H -0.010 1.010 40 H 0.261 0.739 41 H 0.020 0.980 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.790 18.833 -9.558 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.203 4.203 4 C -0.001 4.001 5 N -0.387 5.387 6 C 0.308 3.692 7 O -0.418 6.418 8 C -0.128 4.128 9 C -0.130 4.130 10 C -0.074 4.074 11 N -0.262 5.262 12 C 0.068 3.932 13 C -0.546 4.546 14 H 0.082 0.918 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.725 3.275 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.062 4.062 22 C -0.143 4.143 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.234 0.766 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.049 0.951 39 H 0.008 0.992 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.045 19.201 -8.436 22.124 hybrid contribution -0.905 -0.765 -1.004 1.553 sum 6.140 18.436 -9.441 21.604 Atomic orbital electron populations 1.21879 0.94531 1.02206 1.02138 1.21360 0.96621 0.96876 0.97890 1.21762 1.01187 0.95072 1.02249 1.21397 0.99853 0.80878 0.97979 1.46082 1.58722 1.09607 1.24303 1.20901 0.78288 0.88473 0.81585 1.90674 1.39800 1.78183 1.33119 1.21436 0.98619 0.91170 1.01530 1.21398 0.99704 0.95261 0.96674 1.22039 0.90186 0.94953 1.00189 1.62031 1.06168 1.21662 1.36374 1.19708 0.95804 0.81739 0.95945 1.21174 0.91904 0.92488 1.49009 0.91849 1.24998 0.98627 0.95495 0.95537 1.69963 1.35757 0.97344 1.50798 0.86510 0.85310 0.77605 0.78073 1.20774 1.21272 1.19751 1.21911 1.01589 0.91544 0.91153 1.21635 0.92118 0.98784 1.01779 0.92318 0.92421 0.92374 0.90599 0.92400 0.92199 0.92290 0.91561 0.91742 0.76555 0.89195 0.90550 0.91830 0.91013 0.96115 0.95149 0.99171 0.92941 0.96143 0.89471 0.90822 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.07 37.16 0.34 -0.66 16 2 C -0.11 -0.73 2.96 -90.62 -0.27 -1.00 16 3 C -0.14 -0.85 9.19 37.16 0.34 -0.51 16 4 C 0.12 1.15 5.06 -4.04 -0.02 1.13 16 5 N -0.73 -7.62 5.19 -60.29 -0.31 -7.94 16 6 C 0.52 7.28 7.16 -10.98 -0.08 7.20 16 7 O -0.54 -9.55 15.98 5.55 0.09 -9.46 16 8 C -0.11 -1.48 2.59 -91.65 -0.24 -1.72 16 9 C -0.09 -1.48 4.68 -26.66 -0.12 -1.61 16 10 C 0.06 1.01 5.46 -3.84 -0.02 0.99 16 11 N -0.54 -11.56 4.65 -236.11 -1.10 -12.66 16 12 C 0.19 5.03 4.72 -4.98 -0.02 5.01 16 13 C -0.51 -14.17 8.42 -34.44 -0.29 -14.46 16 14 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 15 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.07 1.24 5.30 -3.83 -0.02 1.22 16 22 C -0.10 -1.52 5.26 -26.65 -0.14 -1.66 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.40 7.18 -51.93 -0.37 0.02 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 3.26 7.14 -40.82 -0.29 2.97 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 37 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.03 0.85 7.99 -51.93 -0.41 0.44 16 39 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 1.76 6.70 -51.93 -0.35 1.41 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -31.82 347.43 -9.10 -40.92 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -8.09 Total: -2.01 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.64 Total: -4.63 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.67 Total: -46.58 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.82 -9.10 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049753879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.702 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds