Wall clock time and date at job start Mon Mar 30 2020 01:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47567 * 2 1 4 4 C 1.53001 * 109.47120 * 120.00329 * 2 1 3 5 5 N 1.46505 * 109.47130 * 64.99764 * 4 2 1 6 6 C 1.34775 * 119.99759 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99858 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00073 * 179.97438 * 6 5 4 9 9 C 1.53112 * 109.52531 * 180.02562 * 8 6 5 10 10 C 1.53031 * 109.28065 * 177.56146 * 9 8 6 11 11 N 1.46850 * 109.52191 * 300.81936 * 10 9 8 12 12 C 1.46904 * 111.00104 * 185.83867 * 11 10 9 13 13 C 1.50697 * 109.46891 * 170.00174 * 12 11 10 14 14 H 1.07991 * 120.00449 * 359.72239 * 13 12 11 15 15 C 1.37885 * 119.99686 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.72095 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.72528 * 15 13 12 18 18 H 1.48493 * 109.47326 * 90.00142 * 17 15 13 19 19 H 1.48506 * 109.46545 * 209.99892 * 17 15 13 20 20 H 1.48498 * 109.47210 * 329.99603 * 17 15 13 21 21 C 1.46846 * 111.19767 * 61.74317 * 11 10 9 22 22 C 1.53043 * 109.52316 * 298.25581 * 21 11 10 23 23 H 1.09004 * 109.46885 * 299.99758 * 1 2 3 24 24 H 1.08996 * 109.47230 * 59.99747 * 1 2 3 25 25 H 1.08997 * 109.47535 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46885 * 240.00242 * 2 1 3 27 27 H 1.08997 * 109.47519 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47052 * 300.00362 * 3 2 1 29 29 H 1.09004 * 109.46821 * 60.00203 * 3 2 1 30 30 H 1.09004 * 109.47058 * 304.99779 * 4 2 1 31 31 H 1.09000 * 109.47083 * 184.99558 * 4 2 1 32 32 H 0.96996 * 119.99788 * 0.02562 * 5 4 2 33 33 H 1.08998 * 109.51635 * 59.87395 * 8 6 5 34 34 H 1.09007 * 109.50366 * 57.61598 * 9 8 6 35 35 H 1.09001 * 109.50045 * 297.50269 * 9 8 6 36 36 H 1.08997 * 109.46601 * 180.80276 * 10 9 8 37 37 H 1.09006 * 109.45698 * 60.82720 * 10 9 8 38 38 H 1.08998 * 109.47046 * 49.99675 * 12 11 10 39 39 H 1.09001 * 109.47014 * 289.99875 * 12 11 10 40 40 H 0.97000 * 119.99651 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.46465 * 58.27194 * 21 11 10 42 42 H 1.08998 * 109.46421 * 178.24606 * 21 11 10 43 43 H 1.08999 * 109.50530 * 299.24210 * 22 21 11 44 44 H 1.08996 * 109.50505 * 179.12322 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6523 -2.1329 1.1905 6 6 1.9964 -2.9684 2.1906 7 8 2.6264 -2.5514 3.1393 8 6 1.5972 -4.4203 2.1305 9 6 2.1071 -5.1434 3.3801 10 6 1.6468 -6.6023 3.3429 11 7 0.1801 -6.6530 3.2905 12 6 -0.3028 -8.0366 3.3932 13 6 -1.7978 -8.0339 3.5828 14 1 -2.3348 -7.0981 3.6275 15 6 -2.4793 -9.2263 3.7055 16 7 -1.8252 -10.3660 3.6515 17 14 -4.3314 -9.2228 3.9483 18 1 -5.0042 -9.2607 2.6250 19 1 -4.7290 -10.4146 4.7400 20 1 -4.7334 -7.9905 4.6729 21 6 -0.3304 -6.0063 2.0750 22 6 0.0708 -4.5294 2.0744 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6053 -0.2618 2.1370 31 1 3.1263 -0.6445 1.2951 32 1 1.1488 -2.4664 0.4315 33 1 2.0288 -4.8802 1.2415 34 1 1.7067 -4.6580 4.2703 35 1 3.1962 -5.1058 3.4032 36 1 1.9962 -7.1164 4.2383 37 1 2.0588 -7.0906 2.4597 38 1 0.1707 -8.5244 4.2451 39 1 -0.0534 -8.5772 2.4801 40 1 -2.3047 -11.2049 3.7374 41 1 0.0909 -6.4974 1.1979 42 1 -1.4171 -6.0873 2.0496 43 1 -0.3615 -4.0344 2.9439 44 1 -0.2949 -4.0533 1.1647 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049753879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:27 Heat of formation + Delta-G solvation = -85.082628 kcal Electronic energy + Delta-G solvation = -20867.071483 eV Core-core repulsion = 17817.085527 eV Total energy + Delta-G solvation = -3049.985956 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24483 -39.28969 -37.59389 -35.45865 -34.36242 -33.59272 -31.73205 -29.28936 -28.02963 -27.46515 -25.59839 -24.00409 -23.27300 -21.65795 -21.25313 -20.41471 -18.43940 -18.13734 -17.23205 -16.93025 -16.51315 -15.87786 -15.81539 -15.67693 -15.19298 -14.93651 -14.43008 -14.35844 -14.28922 -13.88944 -13.68659 -13.43668 -13.24565 -13.05977 -12.89912 -12.78552 -12.53389 -12.29849 -12.09028 -12.03971 -11.93863 -11.83315 -11.63062 -11.62042 -11.44860 -11.14763 -10.66086 -10.60235 -10.06975 -8.96891 -8.19321 -6.29483 1.41946 1.43901 1.55430 1.62882 2.22347 2.41462 3.12998 3.30866 3.64884 3.78948 3.84032 3.92511 3.97349 4.14573 4.30176 4.32169 4.44032 4.61060 4.61933 4.69219 4.71326 4.78520 4.81095 4.83918 4.88926 5.01230 5.02004 5.06327 5.14087 5.15507 5.21674 5.24218 5.33716 5.36025 5.41754 5.43607 5.54439 5.67017 6.07384 6.39015 6.55116 6.67787 6.87494 7.25784 7.40441 8.91845 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.003601 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.649434 B = 7772.905650 C = 8524.704331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.145 4.145 4 C 0.122 3.878 5 N -0.716 5.716 6 C 0.523 3.477 7 O -0.583 6.583 8 C -0.101 4.101 9 C -0.083 4.083 10 C 0.056 3.944 11 N -0.550 5.550 12 C 0.208 3.792 13 C -0.522 4.522 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.970 3.030 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.266 1.266 21 C 0.065 3.935 22 C -0.092 4.092 23 H 0.050 0.950 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.414 0.586 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.028 0.972 38 H 0.000 1.000 39 H -0.035 1.035 40 H 0.264 0.736 41 H 0.026 0.974 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.016 20.545 -11.319 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.002 4.002 5 N -0.369 5.369 6 C 0.311 3.689 7 O -0.462 6.462 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.072 4.072 11 N -0.275 5.275 12 C 0.082 3.918 13 C -0.561 4.561 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.190 1.190 21 C -0.063 4.063 22 C -0.130 4.130 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.251 0.749 33 H 0.132 0.868 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.047 0.953 38 H 0.018 0.982 39 H -0.017 1.017 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.263 20.947 -10.244 24.144 hybrid contribution -0.610 -1.279 -0.471 1.493 sum 5.654 19.668 -10.716 23.100 Atomic orbital electron populations 1.21894 0.94299 1.02289 1.02357 1.21314 0.96679 0.97086 0.96739 1.21770 1.01312 0.94533 1.02659 1.21490 0.99532 0.80198 0.98980 1.45954 1.57544 1.09719 1.23645 1.20773 0.77974 0.88529 0.81669 1.90668 1.41954 1.78726 1.34894 1.21367 0.98137 0.91462 1.01243 1.21266 1.00321 0.93378 0.97209 1.22066 0.88298 0.96793 1.00057 1.61952 1.08203 1.18814 1.38519 1.19351 0.95167 0.83979 0.93331 1.21473 0.92888 0.92694 1.49000 0.91777 1.25931 1.03840 0.94986 0.94978 1.70093 1.37878 0.98056 1.51609 0.85375 0.79000 0.77749 0.78458 1.19496 1.20949 1.18992 1.21950 1.00437 0.93948 0.89933 1.21530 0.92489 0.95700 1.03240 0.93120 0.91253 0.92344 0.89381 0.92278 0.91025 0.92676 0.92900 0.92350 0.74864 0.86778 0.92533 0.90635 0.92089 0.95332 0.98224 1.01740 0.92707 0.95586 0.91344 0.92226 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.07 71.98 0.65 -0.95 16 2 C -0.10 -1.07 2.96 -10.80 -0.03 -1.10 16 3 C -0.14 -1.38 9.19 71.98 0.66 -0.72 16 4 C 0.12 2.05 5.06 86.38 0.44 2.49 16 5 N -0.72 -13.00 5.19 -463.04 -2.40 -15.41 16 6 C 0.52 13.64 7.16 87.66 0.63 14.26 16 7 O -0.58 -20.09 15.98 -3.04 -0.05 -20.14 16 8 C -0.10 -2.60 2.59 -11.46 -0.03 -2.63 16 9 C -0.08 -2.63 4.68 30.64 0.14 -2.49 16 10 C 0.06 2.08 5.46 86.32 0.47 2.55 16 11 N -0.55 -24.04 4.65 -900.92 -4.19 -28.23 16 12 C 0.21 11.23 4.72 85.56 0.40 11.64 16 13 C -0.52 -29.68 8.42 25.60 0.22 -29.47 16 14 H 0.06 3.56 7.13 -2.92 -0.02 3.54 16 15 C 0.00 0.03 5.46 84.66 0.46 0.49 16 16 N -0.94 -56.63 13.29 21.45 0.28 -56.34 16 17 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 C 0.07 2.38 5.30 86.33 0.46 2.83 16 22 C -0.09 -2.46 5.26 30.65 0.16 -2.30 16 23 H 0.05 0.62 8.14 -2.38 -0.02 0.61 16 24 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.61 7.18 -2.39 -0.02 0.59 16 26 H 0.09 0.78 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.41 5.20 7.14 -92.71 -0.66 4.54 16 33 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.02 8.04 -2.38 -0.02 2.00 16 35 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.06 2.35 8.02 -2.39 -0.02 2.33 16 37 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.00 -0.02 7.99 -2.39 -0.02 -0.04 16 39 H -0.04 -2.03 8.12 -2.39 -0.02 -2.05 16 40 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 41 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 2.74 6.70 -2.39 -0.02 2.72 16 43 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.10 1.91 7.66 -2.39 -0.02 1.89 16 Total: -1.00 -70.19 347.43 0.59 -69.60 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.29 Total: 9.71 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 4.63 Total: -5.40 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -6.31 Total: -99.98 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.19 0.59 -69.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049753879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.486 kcal (2) G-P(sol) polarization free energy of solvation -70.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds