Wall clock time and date at job start Mon Mar 30 2020 01:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47090 * 2 1 4 4 C 1.52996 * 109.47455 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00058 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00109 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99938 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.50454 * 300.08012 * 8 6 5 10 10 C 1.53117 * 109.53658 * 60.17686 * 8 6 5 11 11 C 1.53121 * 109.16405 * 177.61367 * 10 8 6 12 12 C 1.53042 * 109.27764 * 302.34857 * 11 10 8 13 13 N 1.46844 * 109.52315 * 59.17560 * 12 11 10 14 14 C 1.46903 * 110.99866 * 174.16044 * 13 12 11 15 15 C 1.50694 * 109.47066 * 294.21034 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.46847 * 111.20014 * 298.25680 * 13 12 11 24 24 H 1.08999 * 109.46669 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46942 * 299.99954 * 1 2 3 26 26 H 1.08996 * 109.46951 * 60.00091 * 1 2 3 27 27 H 1.08993 * 109.47629 * 239.99951 * 2 1 3 28 28 H 1.09005 * 109.47371 * 119.99513 * 2 1 3 29 29 H 1.09003 * 109.47580 * 59.99920 * 3 2 1 30 30 H 1.09004 * 109.46927 * 299.99533 * 3 2 1 31 31 H 1.08997 * 109.47510 * 59.99324 * 4 3 2 32 32 H 1.09005 * 109.47158 * 299.99605 * 4 3 2 33 33 H 0.96998 * 119.99912 * 0.02562 * 5 4 3 34 34 H 1.08994 * 109.52189 * 297.52262 * 10 8 6 35 35 H 1.09006 * 109.52176 * 57.64958 * 10 8 6 36 36 H 1.09000 * 109.49853 * 62.28301 * 11 10 8 37 37 H 1.08995 * 109.50736 * 182.36914 * 11 10 8 38 38 H 1.08998 * 109.46291 * 299.15982 * 12 11 10 39 39 H 1.08995 * 109.46120 * 179.19113 * 12 11 10 40 40 H 1.09007 * 109.47052 * 174.20719 * 14 13 12 41 41 H 1.09003 * 109.46808 * 54.21411 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.46678 * 181.75844 * 23 13 12 44 44 H 1.08998 * 109.46335 * 301.73006 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 5.3833 3.0702 -0.0014 7 8 6.1715 2.1484 -0.0014 8 6 5.8856 4.4910 -0.0014 9 1 5.5213 5.0057 -0.8905 10 6 5.3797 5.2129 1.2505 11 6 5.9434 6.6365 1.2721 12 6 7.4721 6.5752 1.2351 13 7 7.9059 5.8761 0.0187 14 6 9.3677 5.9193 -0.1203 15 6 9.8094 7.3429 -0.3417 16 1 9.0775 8.1363 -0.3761 17 6 11.1480 7.6325 -0.5013 18 7 12.0393 6.6663 -0.4599 19 14 11.6954 9.3972 -0.7764 20 1 13.1732 9.4408 -0.9168 21 1 11.0644 9.9242 -2.0130 22 1 11.2840 10.2294 0.3826 23 6 7.4160 4.4919 -0.0015 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9287 0.8892 33 1 3.4279 3.5611 -0.0008 34 1 4.2906 5.2526 1.2331 35 1 5.7105 4.6757 2.1395 36 1 5.5800 7.1849 0.4031 37 1 5.6209 7.1418 2.1824 38 1 7.8354 6.0385 2.1115 39 1 7.8763 7.5874 1.2358 40 1 9.6699 5.3085 -0.9712 41 1 9.8305 5.5321 0.7874 42 1 12.9809 6.8700 -0.5726 43 1 7.7793 3.9911 -0.8988 44 1 7.7795 3.9650 0.8807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049754145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:51 Heat of formation + Delta-G solvation = -65.786768 kcal Electronic energy + Delta-G solvation = -20586.912024 eV Core-core repulsion = 17537.762799 eV Total energy + Delta-G solvation = -3049.149224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.02528 -37.77975 -36.32102 -34.00837 -33.49379 -31.88815 -30.69597 -29.03583 -26.95301 -24.48879 -23.78866 -22.54140 -21.65949 -21.48999 -20.07591 -19.17267 -16.92815 -16.32168 -16.17872 -15.95383 -15.18612 -14.81121 -14.28434 -14.14808 -14.03617 -13.88397 -13.57366 -13.35082 -12.89611 -12.67162 -12.53736 -12.22805 -11.91987 -11.79672 -11.51643 -11.49471 -11.18287 -11.02186 -10.99229 -10.80697 -10.63881 -10.43547 -10.33735 -10.11017 -9.64719 -9.52547 -9.13901 -9.08861 -8.39422 -7.18967 -5.98219 -3.99902 2.77324 3.14933 3.35738 3.39823 3.42510 4.44814 4.47137 4.55090 4.63269 4.79296 4.94649 5.00419 5.05194 5.17367 5.25032 5.28090 5.36710 5.40225 5.50874 5.51967 5.59219 5.64849 5.75298 5.80852 5.87165 5.89963 5.94192 6.13423 6.16365 6.24106 6.36379 6.39125 6.58786 6.71818 6.75840 7.36897 7.41060 7.48811 7.83550 8.14238 8.25893 8.31090 8.59786 9.07369 9.63790 11.12623 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047110 B = 0.003079 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.207781 B = 9092.436819 C = 9450.491552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.131 4.131 4 C 0.117 3.883 5 N -0.736 5.736 6 C 0.519 3.481 7 O -0.537 6.537 8 C -0.103 4.103 9 H 0.103 0.897 10 C -0.106 4.106 11 C -0.115 4.115 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.194 3.806 15 C -0.507 4.507 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.898 5.898 19 Si 0.899 3.101 20 H -0.288 1.288 21 H -0.276 1.276 22 H -0.278 1.278 23 C 0.077 3.923 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.399 0.601 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.019 0.981 39 H 0.085 0.915 40 H 0.031 0.969 41 H -0.009 1.009 42 H 0.262 0.738 43 H 0.073 0.927 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.564 -8.146 2.606 24.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.169 4.169 4 C -0.006 4.006 5 N -0.389 5.389 6 C 0.306 3.694 7 O -0.413 6.413 8 C -0.124 4.124 9 H 0.121 0.879 10 C -0.144 4.144 11 C -0.153 4.153 12 C -0.068 4.068 13 N -0.262 5.262 14 C 0.069 3.931 15 C -0.546 4.546 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.537 5.537 19 Si 0.727 3.273 20 H -0.214 1.214 21 H -0.202 1.202 22 H -0.203 1.203 23 C -0.052 4.052 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.233 0.767 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.037 0.963 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.009 0.991 42 H 0.071 0.929 43 H 0.092 0.908 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -21.963 -8.623 2.188 23.696 hybrid contribution 0.441 0.755 0.507 1.010 sum -21.522 -7.868 2.694 23.073 Atomic orbital electron populations 1.21764 0.95555 1.01761 1.01878 1.21439 0.96037 0.96006 1.02572 1.21830 0.94325 0.98001 1.02770 1.21338 0.93476 0.83488 1.02338 1.46055 1.07417 1.08514 1.76954 1.20899 0.81732 0.91904 0.74880 1.90699 1.55283 1.46665 1.48642 1.21382 0.98810 0.91324 1.00916 0.87858 1.21534 0.99289 0.97064 0.96509 1.21626 0.96854 0.95197 1.01655 1.21976 0.93126 1.00651 0.91037 1.62022 1.16086 1.11842 1.36270 1.19696 0.79573 0.97761 0.96028 1.21118 0.91810 0.92859 1.48794 0.91890 1.25009 0.96701 0.97392 0.95616 1.69962 1.01576 1.31776 1.50432 0.86553 0.77282 0.84756 0.78743 1.21410 1.20182 1.20323 1.21719 0.90787 0.91322 1.01338 0.92630 0.92698 0.92669 0.91625 0.91658 0.91300 0.91262 0.91637 0.91706 0.76652 0.92215 0.92072 0.91158 0.91984 0.96264 0.89663 0.95099 0.99095 0.92881 0.90810 0.95263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.74 5.93 -26.73 -0.16 -0.90 16 3 C -0.13 -0.85 5.33 -26.73 -0.14 -1.00 16 4 C 0.12 1.12 5.67 -4.04 -0.02 1.10 16 5 N -0.74 -7.83 5.46 -60.29 -0.33 -8.16 16 6 C 0.52 7.74 7.16 -10.99 -0.08 7.66 16 7 O -0.54 -10.28 15.98 5.56 0.09 -10.19 16 8 C -0.10 -1.54 2.69 -91.69 -0.25 -1.79 16 9 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 10 C -0.11 -1.37 5.16 -26.61 -0.14 -1.51 16 11 C -0.12 -1.66 6.09 -26.65 -0.16 -1.83 16 12 C 0.06 1.17 5.30 -3.83 -0.02 1.15 16 13 N -0.54 -11.87 4.65 -236.11 -1.10 -12.97 16 14 C 0.19 5.24 4.72 -4.98 -0.02 5.22 16 15 C -0.51 -14.40 8.43 -34.44 -0.29 -14.69 16 16 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 19 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.08 1.53 4.03 -3.83 -0.02 1.52 16 24 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.40 3.13 7.95 -40.82 -0.32 2.80 16 34 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 1.78 6.70 -51.93 -0.35 1.43 16 40 H 0.03 0.90 7.99 -51.92 -0.41 0.48 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.07 1.56 7.99 -51.93 -0.41 1.14 16 44 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 350.03 15.07 5.27 5.27 Total: -1.00 -32.69 350.03 -9.54 -42.23 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -8.17 Total: -2.46 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.03 Total: -4.03 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: -0.69 Total: -47.61 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.69 -9.54 -42.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.553 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds