Wall clock time and date at job start Mon Mar 30 2020 01:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47090 * 2 1 4 4 C 1.52996 * 109.47455 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47385 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00058 * 179.97438 * 5 4 3 7 7 O 1.21282 * 120.00109 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99938 * 180.02562 * 6 5 4 9 9 H 1.08998 * 109.50454 * 300.08012 * 8 6 5 10 10 C 1.53117 * 109.53658 * 60.17686 * 8 6 5 11 11 C 1.53121 * 109.16405 * 177.61367 * 10 8 6 12 12 C 1.53042 * 109.27764 * 302.34857 * 11 10 8 13 13 N 1.46844 * 109.52315 * 59.17560 * 12 11 10 14 14 C 1.46903 * 110.99866 * 174.16044 * 13 12 11 15 15 C 1.50694 * 109.47066 * 294.21034 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.46847 * 111.20014 * 298.25680 * 13 12 11 24 24 H 1.08999 * 109.46669 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.46942 * 299.99954 * 1 2 3 26 26 H 1.08996 * 109.46951 * 60.00091 * 1 2 3 27 27 H 1.08993 * 109.47629 * 239.99951 * 2 1 3 28 28 H 1.09005 * 109.47371 * 119.99513 * 2 1 3 29 29 H 1.09003 * 109.47580 * 59.99920 * 3 2 1 30 30 H 1.09004 * 109.46927 * 299.99533 * 3 2 1 31 31 H 1.08997 * 109.47510 * 59.99324 * 4 3 2 32 32 H 1.09005 * 109.47158 * 299.99605 * 4 3 2 33 33 H 0.96998 * 119.99912 * 0.02562 * 5 4 3 34 34 H 1.08994 * 109.52189 * 297.52262 * 10 8 6 35 35 H 1.09006 * 109.52176 * 57.64958 * 10 8 6 36 36 H 1.09000 * 109.49853 * 62.28301 * 11 10 8 37 37 H 1.08995 * 109.50736 * 182.36914 * 11 10 8 38 38 H 1.08998 * 109.46291 * 299.15982 * 12 11 10 39 39 H 1.08995 * 109.46120 * 179.19113 * 12 11 10 40 40 H 1.09007 * 109.47052 * 174.20719 * 14 13 12 41 41 H 1.09003 * 109.46808 * 54.21411 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.08996 * 109.46678 * 181.75844 * 23 13 12 44 44 H 1.08998 * 109.46335 * 301.73006 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 -0.0013 6 6 5.3833 3.0702 -0.0014 7 8 6.1715 2.1484 -0.0014 8 6 5.8856 4.4910 -0.0014 9 1 5.5213 5.0057 -0.8905 10 6 5.3797 5.2129 1.2505 11 6 5.9434 6.6365 1.2721 12 6 7.4721 6.5752 1.2351 13 7 7.9059 5.8761 0.0187 14 6 9.3677 5.9193 -0.1203 15 6 9.8094 7.3429 -0.3417 16 1 9.0775 8.1363 -0.3761 17 6 11.1480 7.6325 -0.5013 18 7 12.0393 6.6663 -0.4599 19 14 11.6954 9.3972 -0.7764 20 1 13.1732 9.4408 -0.9168 21 1 11.0644 9.9242 -2.0130 22 1 11.2840 10.2294 0.3826 23 6 7.4160 4.4919 -0.0015 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8901 31 1 3.9330 0.9288 -0.8908 32 1 3.9337 0.9287 0.8892 33 1 3.4279 3.5611 -0.0008 34 1 4.2906 5.2526 1.2331 35 1 5.7105 4.6757 2.1395 36 1 5.5800 7.1849 0.4031 37 1 5.6209 7.1418 2.1824 38 1 7.8354 6.0385 2.1115 39 1 7.8763 7.5874 1.2358 40 1 9.6699 5.3085 -0.9712 41 1 9.8305 5.5321 0.7874 42 1 12.9809 6.8700 -0.5726 43 1 7.7793 3.9911 -0.8988 44 1 7.7795 3.9650 0.8807 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049754145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:50 Heat of formation + Delta-G solvation = -88.842524 kcal Electronic energy + Delta-G solvation = -20587.911797 eV Core-core repulsion = 17537.762799 eV Total energy + Delta-G solvation = -3050.148997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.27123 -39.23998 -37.13444 -35.55476 -34.69241 -33.70406 -32.04672 -29.88162 -28.90665 -25.76406 -25.27082 -23.64452 -23.20520 -22.27347 -21.33141 -20.51168 -18.49770 -18.09792 -17.18901 -16.90280 -16.66231 -16.18576 -15.83177 -15.63041 -15.17096 -15.06671 -14.54686 -14.46376 -14.29529 -14.07391 -13.78014 -13.58737 -13.25242 -13.05753 -12.70880 -12.54294 -12.47489 -12.42312 -12.12577 -12.07470 -11.97264 -11.78680 -11.72435 -11.49105 -11.36000 -11.15036 -10.70954 -10.61181 -10.11475 -9.08605 -8.20795 -6.32447 1.41365 1.45982 1.53797 1.58753 2.12854 2.41042 3.10988 3.28331 3.62966 3.81398 3.88605 3.97087 4.03640 4.17186 4.28376 4.29371 4.38009 4.45203 4.64327 4.65536 4.69631 4.76563 4.81592 4.88332 4.94058 4.95898 5.03123 5.06615 5.09044 5.15640 5.20262 5.27338 5.30641 5.37565 5.43775 5.47843 5.49800 5.63866 6.02082 6.31326 6.53472 6.58284 6.83758 7.24003 7.37406 8.90896 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047110 B = 0.003079 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.207781 B = 9092.436819 C = 9450.491552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.119 4.119 4 C 0.115 3.885 5 N -0.712 5.712 6 C 0.520 3.480 7 O -0.590 6.590 8 C -0.093 4.093 9 H 0.122 0.878 10 C -0.100 4.100 11 C -0.104 4.104 12 C 0.055 3.945 13 N -0.536 5.536 14 C 0.207 3.793 15 C -0.521 4.521 16 H 0.071 0.929 17 C -0.005 4.005 18 N -0.939 5.939 19 Si 0.977 3.023 20 H -0.285 1.285 21 H -0.265 1.265 22 H -0.264 1.264 23 C 0.080 3.920 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.418 0.582 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.005 0.995 39 H 0.068 0.932 40 H -0.004 1.004 41 H -0.045 1.045 42 H 0.264 0.736 43 H 0.048 0.952 44 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.911 -6.250 2.835 26.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.157 4.157 4 C -0.008 4.008 5 N -0.365 5.365 6 C 0.307 3.693 7 O -0.470 6.470 8 C -0.114 4.114 9 H 0.140 0.860 10 C -0.137 4.137 11 C -0.142 4.142 12 C -0.073 4.073 13 N -0.260 5.260 14 C 0.081 3.919 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.202 4.202 18 N -0.579 5.579 19 Si 0.801 3.199 20 H -0.211 1.211 21 H -0.190 1.190 22 H -0.188 1.188 23 C -0.049 4.049 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.256 0.744 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.024 0.976 39 H 0.086 0.914 40 H 0.014 0.986 41 H -0.028 1.028 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges -25.398 -6.710 2.425 26.381 hybrid contribution 1.479 0.074 0.444 1.546 sum -23.919 -6.635 2.869 24.988 Atomic orbital electron populations 1.21747 0.94649 1.02089 1.02287 1.21453 0.96768 0.95731 1.02299 1.21764 0.91455 0.98525 1.03966 1.21442 0.95725 0.82418 1.01229 1.45850 1.06083 1.09863 1.74701 1.20834 0.82814 0.91104 0.74556 1.90691 1.56945 1.47919 1.51416 1.21274 0.94626 0.92297 1.03246 0.86021 1.21569 1.02191 0.95381 0.94586 1.21585 0.92096 0.96680 1.03801 1.22114 0.97344 0.98784 0.89050 1.61993 1.12659 1.13332 1.38060 1.19364 0.82883 0.96846 0.92842 1.21415 0.92426 0.93271 1.48840 0.91134 1.26062 0.96695 1.02543 0.94930 1.70122 1.02018 1.34532 1.51256 0.85316 0.76755 0.78493 0.79316 1.21079 1.18989 1.18833 1.21670 0.94809 0.89475 0.98992 0.92445 0.92219 0.92289 0.92049 0.91966 0.89934 0.90115 0.92951 0.92831 0.74397 0.87085 0.92876 0.90050 0.88793 0.97647 0.91400 0.98555 1.02776 0.92689 0.93370 0.97652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.52 16 2 C -0.12 -1.27 5.93 30.59 0.18 -1.09 16 3 C -0.12 -1.21 5.33 30.59 0.16 -1.05 16 4 C 0.12 2.03 5.67 86.38 0.49 2.52 16 5 N -0.71 -13.35 5.46 -463.06 -2.53 -15.88 16 6 C 0.52 15.07 7.16 87.66 0.63 15.69 16 7 O -0.59 -23.29 15.98 -3.04 -0.05 -23.34 16 8 C -0.09 -2.67 2.69 -11.49 -0.03 -2.70 16 9 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 10 C -0.10 -2.23 5.16 30.67 0.16 -2.07 16 11 C -0.10 -2.66 6.09 30.65 0.19 -2.47 16 12 C 0.06 2.14 5.30 86.33 0.46 2.60 16 13 N -0.54 -24.53 4.65 -900.92 -4.19 -28.72 16 14 C 0.21 11.89 4.72 85.55 0.40 12.30 16 15 C -0.52 -30.44 8.43 25.60 0.22 -30.22 16 16 H 0.07 3.93 7.12 -2.91 -0.02 3.91 16 17 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 18 N -0.94 -58.93 13.29 21.45 0.28 -58.64 16 19 Si 0.98 44.94 29.54 68.60 2.03 46.97 16 20 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 23 C 0.08 3.30 4.03 86.33 0.35 3.65 16 24 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.42 4.69 7.95 -92.71 -0.74 3.96 16 34 H 0.11 1.46 7.66 -2.39 -0.02 1.44 16 35 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 39 H 0.07 2.85 6.70 -2.39 -0.02 2.83 16 40 H 0.00 -0.23 7.99 -2.38 -0.02 -0.25 16 41 H -0.05 -2.87 8.12 -2.39 -0.02 -2.89 16 42 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 43 H 0.05 2.19 7.99 -2.39 -0.02 2.17 16 44 H 0.01 0.24 8.08 -2.39 -0.02 0.22 16 Total: -1.00 -76.19 350.03 0.13 -76.06 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.21 Total: 6.73 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: 4.38 Total: -3.18 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -6.43 Total: -103.24 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -76.19 0.13 -76.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.784 kcal (2) G-P(sol) polarization free energy of solvation -76.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds