Wall clock time and date at job start Mon Mar 30 2020 01:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46925 * 2 1 4 4 C 1.52999 * 109.47028 * 120.00134 * 2 1 3 5 5 N 1.46904 * 109.47406 * 65.83231 * 4 2 1 6 6 C 1.46898 * 111.00011 * 203.92303 * 5 4 2 7 7 C 1.50699 * 109.47181 * 71.65488 * 6 5 4 8 8 H 1.07999 * 119.99841 * 5.02410 * 7 6 5 9 9 C 1.37876 * 120.00208 * 185.02483 * 7 6 5 10 10 N 1.31518 * 119.99887 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00546 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47142 * 89.99859 * 11 9 7 13 13 H 1.48500 * 109.47442 * 210.00321 * 11 9 7 14 14 H 1.48507 * 109.46708 * 330.00036 * 11 9 7 15 15 C 1.46898 * 110.99845 * 79.96835 * 5 4 2 16 16 C 1.50701 * 109.47212 * 277.69434 * 15 5 4 17 17 O 1.21280 * 120.00025 * 352.79132 * 16 15 5 18 18 N 1.34771 * 119.99982 * 172.51094 * 16 15 5 19 19 C 1.47015 * 125.64952 * 359.97041 * 18 16 15 20 20 C 1.54322 * 107.27816 * 180.96475 * 19 18 16 21 21 C 1.55163 * 102.86017 * 22.52797 * 20 19 18 22 22 C 1.47429 * 125.64704 * 180.27423 * 18 16 15 23 23 H 1.08998 * 109.47342 * 66.72271 * 1 2 3 24 24 H 1.08999 * 109.47397 * 186.72845 * 1 2 3 25 25 H 1.09002 * 109.47242 * 306.72576 * 1 2 3 26 26 H 1.09000 * 109.46888 * 239.99712 * 2 1 3 27 27 H 1.09002 * 109.46796 * 180.02562 * 3 2 1 28 28 H 1.09002 * 109.47353 * 299.99607 * 3 2 1 29 29 H 1.09000 * 109.47573 * 60.00131 * 3 2 1 30 30 H 1.09004 * 109.46648 * 305.82983 * 4 2 1 31 31 H 1.09000 * 109.47200 * 185.83483 * 4 2 1 32 32 H 1.08998 * 109.47315 * 191.65527 * 6 5 4 33 33 H 1.09002 * 109.47254 * 311.65637 * 6 5 4 34 34 H 0.97003 * 120.00527 * 179.97438 * 10 9 7 35 35 H 1.08998 * 109.46859 * 157.69693 * 15 5 4 36 36 H 1.09005 * 109.47333 * 37.69215 * 15 5 4 37 37 H 1.09005 * 109.88516 * 300.50892 * 19 18 16 38 38 H 1.09003 * 109.88470 * 61.67762 * 19 18 16 39 39 H 1.08993 * 110.92338 * 264.10949 * 20 19 18 40 40 H 1.09003 * 110.58935 * 140.78175 * 20 19 18 41 41 H 1.09000 * 111.00106 * 206.23145 * 21 20 19 42 42 H 1.08994 * 111.00441 * 82.37742 * 21 20 19 43 43 H 1.09002 * 110.36884 * 274.67406 * 22 18 16 44 44 H 1.09000 * 110.36490 * 36.88983 * 22 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6687 -2.1410 1.1809 6 6 1.6125 -2.7355 2.5230 7 6 0.4052 -2.2093 3.2555 8 1 -0.2983 -1.5676 2.7458 9 6 0.1987 -2.5469 4.5762 10 7 1.0557 -3.3278 5.1970 11 14 -1.2981 -1.8952 5.4840 12 1 -2.4274 -2.8458 5.3229 13 1 -0.9770 -1.7478 6.9264 14 1 -1.6797 -0.5736 4.9244 15 6 2.5914 -2.8853 0.3136 16 6 2.1792 -2.7108 -1.1255 17 8 1.1412 -2.1443 -1.3945 18 7 2.9670 -3.1793 -2.1136 19 6 4.2485 -3.8760 -1.9303 20 6 4.7985 -4.2009 -3.3351 21 6 4.0788 -3.1630 -4.2364 22 6 2.6893 -3.0723 -3.5575 23 1 -0.3634 0.4061 -0.9440 24 1 -0.3634 -1.0206 0.1204 25 1 -0.3634 0.6145 0.8237 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.5939 -0.2712 2.1361 31 1 3.1250 -0.6317 1.3030 32 1 1.5414 -3.8198 2.4374 33 1 2.5151 -2.4731 3.0748 34 1 0.9108 -3.5651 6.1263 35 1 2.5615 -3.9432 0.5743 36 1 3.6042 -2.5059 0.4500 37 1 4.9475 -3.2323 -1.3963 38 1 4.0919 -4.7996 -1.3730 39 1 4.5357 -5.2165 -3.6307 40 1 5.8784 -4.0561 -3.3668 41 1 3.9907 -3.5285 -5.2594 42 1 4.5903 -2.2009 -4.2095 43 1 2.0533 -3.8953 -3.8836 44 1 2.2168 -2.1163 -3.7831 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049800756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:16 Heat of formation + Delta-G solvation = -50.167502 kcal Electronic energy + Delta-G solvation = -21824.062101 eV Core-core repulsion = 18775.590178 eV Total energy + Delta-G solvation = -3048.471922 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.13229 -39.04704 -37.64068 -35.60646 -34.43862 -32.62666 -30.32328 -29.51617 -28.06382 -27.82115 -26.03814 -24.26459 -22.64281 -21.91902 -20.83019 -20.04801 -18.58357 -17.88290 -17.62782 -17.05655 -16.49736 -16.13688 -15.55316 -15.10266 -15.03087 -14.72198 -14.36236 -14.22769 -14.12798 -13.82074 -13.58668 -13.39746 -13.17796 -12.95980 -12.83785 -12.74964 -12.53470 -12.47395 -12.15158 -12.09283 -12.00790 -11.69271 -11.55492 -11.45892 -11.35103 -11.05304 -10.62163 -10.59143 -9.49622 -8.95913 -8.18754 -6.27150 1.40187 1.41261 1.52692 1.73321 2.01049 2.41776 3.13259 3.28088 3.58879 3.73786 3.98869 4.07898 4.10238 4.20094 4.32166 4.35618 4.38355 4.45443 4.54376 4.64083 4.72951 4.88145 4.89429 4.91171 4.95129 4.98808 5.04634 5.11208 5.14787 5.14898 5.19743 5.27860 5.33613 5.37494 5.48940 5.65018 5.71880 5.79291 6.07534 6.36251 6.48437 6.67107 6.88678 7.34950 7.41874 8.91370 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022744 B = 0.005128 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.793951 B = 5459.368192 C = 6160.963764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.090 4.090 3 C -0.140 4.140 4 C 0.075 3.925 5 N -0.529 5.529 6 C 0.212 3.788 7 C -0.516 4.516 8 H 0.056 0.944 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.962 3.038 12 H -0.275 1.275 13 H -0.279 1.279 14 H -0.269 1.269 15 C 0.042 3.958 16 C 0.524 3.476 17 O -0.538 6.538 18 N -0.628 5.628 19 C 0.088 3.912 20 C -0.121 4.121 21 C -0.122 4.122 22 C 0.099 3.901 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.026 0.974 32 H 0.005 0.995 33 H -0.026 1.026 34 H 0.264 0.736 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.222 0.845 -17.977 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.053 4.053 5 N -0.253 5.253 6 C 0.086 3.914 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.573 5.573 11 Si 0.787 3.213 12 H -0.201 1.201 13 H -0.204 1.204 14 H -0.193 1.193 15 C -0.089 4.089 16 C 0.312 3.688 17 O -0.414 6.414 18 N -0.364 5.364 19 C -0.034 4.034 20 C -0.159 4.159 21 C -0.160 4.160 22 C -0.024 4.024 23 H 0.061 0.939 24 H 0.062 0.938 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.023 0.977 33 H -0.008 1.008 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.174 1.062 -18.071 20.294 hybrid contribution -0.078 0.001 1.377 1.379 sum 9.096 1.062 -16.694 19.041 Atomic orbital electron populations 1.21386 0.95750 1.00821 0.98673 1.21291 0.96371 0.95395 0.97765 1.21804 1.00735 0.95486 1.01712 1.22112 0.96334 0.88205 0.98649 1.61528 1.48985 1.02362 1.12429 1.19435 0.94956 0.93367 0.83647 1.21402 1.08399 1.29825 0.95812 0.92592 1.25785 0.99591 0.95526 0.98255 1.70058 1.37817 1.37470 1.11952 0.85490 0.79351 0.78928 0.77516 1.20071 1.20429 1.19330 1.21998 0.95498 1.00564 0.90862 1.20455 0.83402 0.77823 0.87077 1.90657 1.24815 1.41747 1.84228 1.48667 1.22941 1.58355 1.06485 1.22309 0.84133 0.96866 1.00125 1.22644 1.01559 1.00035 0.91659 1.22766 0.93026 1.00329 0.99886 1.22332 0.99078 1.01419 0.79522 0.93930 0.93750 0.95051 0.90572 0.92394 0.91917 0.93166 0.92688 0.95543 0.97679 1.00825 0.92698 0.88857 0.91247 0.90900 0.91186 0.89528 0.87910 0.87695 0.90456 0.91759 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.39 8.30 71.98 0.60 -3.79 16 2 C -0.09 -3.33 2.38 -10.79 -0.03 -3.35 16 3 C -0.14 -4.16 9.19 71.98 0.66 -3.50 16 4 C 0.07 3.15 4.23 86.30 0.36 3.51 16 5 N -0.53 -24.19 3.35 -905.36 -3.04 -27.23 16 6 C 0.21 11.45 4.69 85.56 0.40 11.85 16 7 C -0.52 -30.19 8.27 25.60 0.21 -29.98 16 8 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 9 C 0.01 0.37 5.46 84.65 0.46 0.83 16 10 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 11 Si 0.96 45.73 29.54 68.60 2.03 47.75 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 15 C 0.04 1.56 4.76 85.56 0.41 1.96 16 16 C 0.52 18.27 6.66 87.66 0.58 18.85 16 17 O -0.54 -22.40 12.11 -3.03 -0.04 -22.43 16 18 N -0.63 -16.20 3.33 -811.79 -2.70 -18.90 16 19 C 0.09 1.57 6.44 86.73 0.56 2.13 16 20 C -0.12 -1.33 6.95 31.78 0.22 -1.11 16 21 C -0.12 -1.50 7.08 31.99 0.23 -1.27 16 22 C 0.10 2.07 6.91 86.86 0.60 2.67 16 23 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 24 H 0.04 2.09 6.87 -2.39 -0.02 2.07 16 25 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 2.93 4.53 -2.39 -0.01 2.92 16 27 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.05 2.60 7.07 -2.39 -0.02 2.58 16 31 H 0.03 1.03 7.56 -2.39 -0.02 1.01 16 32 H 0.01 0.29 7.64 -2.39 -0.02 0.28 16 33 H -0.03 -1.49 8.06 -2.39 -0.02 -1.51 16 34 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.09 3.38 7.53 -2.39 -0.02 3.37 16 36 H 0.07 2.26 7.47 -2.38 -0.02 2.24 16 37 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 1.45 8.03 -2.39 -0.02 1.43 16 Total: -1.00 -70.36 342.85 2.75 -67.61 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.94 Total: 10.38 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.27 Total: -1.20 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -5.45 Total: -102.11 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.04 Total: -22.43 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.36 2.75 -67.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049800756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.444 kcal (2) G-P(sol) polarization free energy of solvation -70.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds