Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46933 * 2 1 4 4 C 1.52997 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47086 * 55.00112 * 4 3 2 6 6 C 1.53007 * 109.47313 * 175.00327 * 4 3 2 7 7 N 1.46500 * 109.47302 * 295.00223 * 4 3 2 8 8 C 1.34771 * 120.00527 * 155.00211 * 7 4 3 9 9 O 1.21284 * 119.99571 * 359.97438 * 8 7 4 10 10 C 1.50698 * 120.00495 * 180.02562 * 8 7 4 11 11 H 1.09004 * 109.52326 * 300.07531 * 10 8 7 12 12 C 1.53042 * 109.49972 * 179.97438 * 10 8 7 13 13 C 1.53040 * 109.53577 * 178.68077 * 12 10 8 14 14 C 1.53188 * 109.31368 * 61.36819 * 13 12 10 15 15 N 1.46927 * 108.77455 * 305.36227 * 14 13 12 16 16 C 1.36936 * 120.63108 * 233.58941 * 15 14 13 17 17 H 1.08004 * 120.00484 * 152.62553 * 16 15 14 18 18 C 1.38812 * 119.99899 * 332.62254 * 16 15 14 19 19 N 1.31621 * 120.00212 * 342.38754 * 18 16 15 20 20 Si 1.86802 * 119.99913 * 162.38332 * 18 16 15 21 21 H 1.48501 * 109.47100 * 84.98582 * 20 18 16 22 22 H 1.48497 * 109.47120 * 324.98812 * 20 18 16 23 23 H 1.48502 * 109.47008 * 204.98722 * 20 18 16 24 24 C 1.46928 * 118.73857 * 53.86182 * 15 14 13 25 25 H 1.08999 * 109.47221 * 59.99583 * 1 2 3 26 26 H 1.08999 * 109.46624 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46886 * 299.99630 * 1 2 3 28 28 H 1.08996 * 109.46886 * 240.00370 * 2 1 3 29 29 H 1.09001 * 109.47507 * 119.99954 * 2 1 3 30 30 H 1.08998 * 109.47215 * 59.99952 * 3 2 1 31 31 H 1.08999 * 109.47507 * 300.00241 * 3 2 1 32 32 H 1.08998 * 109.46937 * 180.02562 * 6 4 3 33 33 H 1.09002 * 109.46435 * 300.00008 * 6 4 3 34 34 H 1.08997 * 109.47220 * 59.99867 * 6 4 3 35 35 H 0.97005 * 120.00021 * 334.99499 * 7 4 3 36 36 H 1.08996 * 109.46207 * 58.65982 * 12 10 8 37 37 H 1.09001 * 109.45016 * 298.69518 * 12 10 8 38 38 H 1.08994 * 109.49812 * 301.41119 * 13 12 10 39 39 H 1.09002 * 109.52238 * 181.32668 * 13 12 10 40 40 H 1.09001 * 109.59108 * 185.57403 * 14 13 12 41 41 H 1.08997 * 109.70607 * 65.21515 * 14 13 12 42 42 H 0.96994 * 120.00226 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.58564 * 65.92961 * 24 15 14 44 44 H 1.08999 * 109.58339 * 186.35631 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8427 6 6 4.0799 2.8797 -0.1263 7 7 4.0589 0.8587 1.2508 8 6 5.2809 0.2922 1.2981 9 8 5.9756 0.2655 0.3043 10 6 5.7836 -0.3090 2.5853 11 1 5.8194 0.4601 3.3569 12 6 7.1863 -0.8812 2.3683 13 6 7.7109 -1.4626 3.6832 14 6 6.7900 -2.5994 4.1376 15 7 5.4128 -2.0924 4.2089 16 6 4.6762 -2.2326 5.3547 17 1 3.8922 -1.5256 5.5827 18 6 4.9370 -3.2836 6.2233 19 7 5.6266 -4.3249 5.8080 20 14 4.3095 -3.2198 7.9816 21 1 2.9109 -3.7169 8.0263 22 1 4.3527 -1.8189 8.4721 23 1 5.1659 -4.0730 8.8441 24 6 4.8389 -1.4377 3.0254 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.1699 2.8796 -0.1272 33 1 3.7161 3.3141 -1.0575 34 1 3.7169 3.4690 0.7158 35 1 3.5031 0.8798 2.0456 36 1 7.8535 -0.0885 2.0300 37 1 7.1450 -1.6674 1.6144 38 1 7.7289 -0.6826 4.4443 39 1 8.7192 -1.8489 3.5341 40 1 7.1014 -2.9509 5.1213 41 1 6.8403 -3.4210 3.4232 42 1 5.8086 -5.0594 6.4148 43 1 4.7339 -2.1649 2.2204 44 1 3.8625 -1.0223 3.2751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051053350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -48.708316 kcal Electronic energy + Delta-G solvation = -21523.277921 eV Core-core repulsion = 18474.869274 eV Total energy + Delta-G solvation = -3048.408647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.84748 -37.33904 -36.33099 -33.44643 -33.06888 -31.25010 -30.35403 -29.47829 -26.81396 -25.24004 -23.59587 -22.07877 -21.77707 -20.87825 -20.18858 -18.99084 -17.06913 -16.40603 -16.09738 -14.93744 -14.85583 -14.72129 -14.18122 -13.85307 -13.79003 -13.50417 -13.16554 -12.83743 -12.75140 -12.47927 -12.44745 -12.20120 -12.17502 -11.67061 -11.51880 -11.12163 -11.03091 -10.83488 -10.80654 -10.70266 -10.59683 -10.31013 -10.16200 -9.95993 -9.83538 -9.45374 -9.21526 -8.88058 -8.47863 -6.71818 -5.81466 -3.24459 3.02125 3.35524 3.42576 3.43581 3.45149 4.46366 4.55616 4.86180 4.88781 5.12154 5.24647 5.31346 5.34484 5.40079 5.42959 5.47504 5.60108 5.64360 5.68804 5.70902 5.75759 5.90044 5.97357 6.02697 6.10138 6.12662 6.17989 6.25367 6.29147 6.39716 6.58297 6.68998 6.70468 6.75302 6.89179 6.91409 7.40550 7.67077 7.76003 7.76789 8.40889 8.56587 9.17334 9.80470 10.37388 11.26696 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.005245 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.089454 B = 5336.668502 C = 6396.299738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.125 4.125 4 C 0.139 3.861 5 H 0.085 0.915 6 C -0.162 4.162 7 N -0.728 5.728 8 C 0.524 3.476 9 O -0.550 6.550 10 C -0.125 4.125 11 H 0.092 0.908 12 C -0.086 4.086 13 C -0.143 4.143 14 C 0.167 3.833 15 N -0.588 5.588 16 C -0.257 4.257 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.900 5.900 20 Si 0.902 3.098 21 H -0.286 1.286 22 H -0.280 1.280 23 H -0.289 1.289 24 C 0.162 3.838 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.400 0.600 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.019 0.981 42 H 0.254 0.746 43 H 0.022 0.978 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 11.346 -9.454 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.163 4.163 4 C 0.035 3.965 5 H 0.103 0.897 6 C -0.221 4.221 7 N -0.381 5.381 8 C 0.312 3.688 9 O -0.427 6.427 10 C -0.149 4.149 11 H 0.110 0.890 12 C -0.124 4.124 13 C -0.182 4.182 14 C 0.042 3.958 15 N -0.311 5.311 16 C -0.386 4.386 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.544 5.544 20 Si 0.731 3.269 21 H -0.213 1.213 22 H -0.205 1.205 23 H -0.215 1.215 24 C 0.034 3.966 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.030 11.155 -10.066 15.845 hybrid contribution -0.599 0.016 1.276 1.410 sum -5.629 11.171 -8.789 15.288 Atomic orbital electron populations 1.21765 0.95895 1.01739 1.01469 1.21550 0.95685 0.96411 1.02865 1.21916 0.93987 0.97671 1.02759 1.20928 0.93301 0.94171 0.88146 0.89687 1.22174 1.02114 0.96206 1.01576 1.46175 1.18306 1.60344 1.13266 1.21028 0.80619 0.76331 0.90850 1.90627 1.56462 1.58428 1.37173 1.22056 0.99022 1.00183 0.93602 0.89010 1.21178 0.93614 0.99663 0.97967 1.22208 0.99044 1.00683 0.96262 1.20840 0.82501 0.91123 1.01342 1.44046 1.10347 1.67457 1.09215 1.19137 1.15848 1.06761 0.96861 0.91634 1.25030 1.00277 0.94658 0.99491 1.70042 1.43448 1.06549 1.34344 0.86334 0.78196 0.77476 0.84854 1.21312 1.20544 1.21528 1.20835 0.93473 0.91707 0.90573 0.93057 0.92680 0.92753 0.91998 0.91276 0.91425 0.90773 0.92108 0.92042 0.92600 0.76492 0.93091 0.92183 0.92737 0.92949 0.89385 0.96305 0.93547 0.96037 0.92664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.13 -1.27 5.82 -26.73 -0.16 -1.43 16 3 C -0.13 -1.12 4.75 -26.73 -0.13 -1.25 16 4 C 0.14 1.58 2.57 -67.93 -0.17 1.40 16 5 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 6 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 7 N -0.73 -9.49 4.44 -53.81 -0.24 -9.73 16 8 C 0.52 8.73 7.12 -10.99 -0.08 8.65 16 9 O -0.55 -10.74 15.64 5.55 0.09 -10.65 16 10 C -0.13 -2.23 2.69 -91.43 -0.25 -2.48 16 11 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 12 C -0.09 -1.61 4.46 -26.69 -0.12 -1.73 16 13 C -0.14 -2.80 6.08 -26.61 -0.16 -2.97 16 14 C 0.17 4.01 5.31 -3.71 -0.02 3.99 16 15 N -0.59 -14.42 2.99 -172.05 -0.51 -14.94 16 16 C -0.26 -6.83 9.59 -15.06 -0.14 -6.98 16 17 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 18 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 19 N -0.90 -25.80 11.18 55.49 0.62 -25.18 16 20 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 21 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.16 3.29 5.68 -3.48 -0.02 3.27 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 4.62 8.17 -40.82 -0.33 4.29 16 36 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 37 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.09 2.34 6.02 -51.93 -0.31 2.02 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 1.03 7.55 -51.93 -0.39 0.64 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -30.21 346.99 -8.60 -38.81 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -8.14 Total: 2.06 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.61 Total: -1.77 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: -0.13 Total: -49.84 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.21 -8.60 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051053350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.895 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds