Wall clock time and date at job start Mon Mar 30 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46933 * 2 1 4 4 C 1.52997 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47086 * 55.00112 * 4 3 2 6 6 C 1.53007 * 109.47313 * 175.00327 * 4 3 2 7 7 N 1.46500 * 109.47302 * 295.00223 * 4 3 2 8 8 C 1.34771 * 120.00527 * 155.00211 * 7 4 3 9 9 O 1.21284 * 119.99571 * 359.97438 * 8 7 4 10 10 C 1.50698 * 120.00495 * 180.02562 * 8 7 4 11 11 H 1.09004 * 109.52326 * 300.07531 * 10 8 7 12 12 C 1.53042 * 109.49972 * 179.97438 * 10 8 7 13 13 C 1.53040 * 109.53577 * 178.68077 * 12 10 8 14 14 C 1.53188 * 109.31368 * 61.36819 * 13 12 10 15 15 N 1.46927 * 108.77455 * 305.36227 * 14 13 12 16 16 C 1.36936 * 120.63108 * 233.58941 * 15 14 13 17 17 H 1.08004 * 120.00484 * 152.62553 * 16 15 14 18 18 C 1.38812 * 119.99899 * 332.62254 * 16 15 14 19 19 N 1.31621 * 120.00212 * 342.38754 * 18 16 15 20 20 Si 1.86802 * 119.99913 * 162.38332 * 18 16 15 21 21 H 1.48501 * 109.47100 * 84.98582 * 20 18 16 22 22 H 1.48497 * 109.47120 * 324.98812 * 20 18 16 23 23 H 1.48502 * 109.47008 * 204.98722 * 20 18 16 24 24 C 1.46928 * 118.73857 * 53.86182 * 15 14 13 25 25 H 1.08999 * 109.47221 * 59.99583 * 1 2 3 26 26 H 1.08999 * 109.46624 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46886 * 299.99630 * 1 2 3 28 28 H 1.08996 * 109.46886 * 240.00370 * 2 1 3 29 29 H 1.09001 * 109.47507 * 119.99954 * 2 1 3 30 30 H 1.08998 * 109.47215 * 59.99952 * 3 2 1 31 31 H 1.08999 * 109.47507 * 300.00241 * 3 2 1 32 32 H 1.08998 * 109.46937 * 180.02562 * 6 4 3 33 33 H 1.09002 * 109.46435 * 300.00008 * 6 4 3 34 34 H 1.08997 * 109.47220 * 59.99867 * 6 4 3 35 35 H 0.97005 * 120.00021 * 334.99499 * 7 4 3 36 36 H 1.08996 * 109.46207 * 58.65982 * 12 10 8 37 37 H 1.09001 * 109.45016 * 298.69518 * 12 10 8 38 38 H 1.08994 * 109.49812 * 301.41119 * 13 12 10 39 39 H 1.09002 * 109.52238 * 181.32668 * 13 12 10 40 40 H 1.09001 * 109.59108 * 185.57403 * 14 13 12 41 41 H 1.08997 * 109.70607 * 65.21515 * 14 13 12 42 42 H 0.96994 * 120.00226 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.58564 * 65.92961 * 24 15 14 44 44 H 1.08999 * 109.58339 * 186.35631 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8427 6 6 4.0799 2.8797 -0.1263 7 7 4.0589 0.8587 1.2508 8 6 5.2809 0.2922 1.2981 9 8 5.9756 0.2655 0.3043 10 6 5.7836 -0.3090 2.5853 11 1 5.8194 0.4601 3.3569 12 6 7.1863 -0.8812 2.3683 13 6 7.7109 -1.4626 3.6832 14 6 6.7900 -2.5994 4.1376 15 7 5.4128 -2.0924 4.2089 16 6 4.6762 -2.2326 5.3547 17 1 3.8922 -1.5256 5.5827 18 6 4.9370 -3.2836 6.2233 19 7 5.6266 -4.3249 5.8080 20 14 4.3095 -3.2198 7.9816 21 1 2.9109 -3.7169 8.0263 22 1 4.3527 -1.8189 8.4721 23 1 5.1659 -4.0730 8.8441 24 6 4.8389 -1.4377 3.0254 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 5.1699 2.8796 -0.1272 33 1 3.7161 3.3141 -1.0575 34 1 3.7169 3.4690 0.7158 35 1 3.5031 0.8798 2.0456 36 1 7.8535 -0.0885 2.0300 37 1 7.1450 -1.6674 1.6144 38 1 7.7289 -0.6826 4.4443 39 1 8.7192 -1.8489 3.5341 40 1 7.1014 -2.9509 5.1213 41 1 6.8403 -3.4210 3.4232 42 1 5.8086 -5.0594 6.4148 43 1 4.7339 -2.1649 2.2204 44 1 3.8625 -1.0223 3.2751 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051053350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:49 Heat of formation + Delta-G solvation = -66.227115 kcal Electronic energy + Delta-G solvation = -21524.037593 eV Core-core repulsion = 18474.869274 eV Total energy + Delta-G solvation = -3049.168319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.17595 -38.83377 -37.55430 -34.92982 -34.41970 -32.55173 -32.20339 -30.86929 -27.56775 -27.18988 -25.09482 -23.77674 -22.79760 -21.94769 -21.47196 -20.57309 -18.80718 -17.83116 -17.32062 -16.72210 -16.33458 -15.72080 -15.55879 -15.22170 -15.12888 -14.94694 -14.54672 -14.23015 -14.14569 -13.98501 -13.58991 -13.33771 -13.11404 -13.00026 -12.88680 -12.67119 -12.40980 -12.34173 -12.08659 -11.98428 -11.84719 -11.72125 -11.61511 -11.54954 -11.49398 -11.16359 -10.69298 -10.49846 -10.01645 -8.71575 -7.86191 -5.32452 1.49506 1.51952 1.60654 1.67593 2.28408 2.53684 3.29688 3.57892 3.74686 3.87366 3.99584 4.04879 4.10895 4.13125 4.37331 4.41906 4.48446 4.53330 4.63809 4.65181 4.76492 4.79095 4.85255 4.92411 4.93363 5.02425 5.05625 5.09318 5.17244 5.20899 5.27615 5.29996 5.31904 5.34837 5.49257 5.53619 5.64898 5.67295 5.75427 6.38256 6.59525 7.13792 7.30649 7.83279 8.36933 9.20652 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017955 B = 0.005245 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.089454 B = 5336.668502 C = 6396.299738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.115 4.115 4 C 0.136 3.864 5 H 0.063 0.937 6 C -0.156 4.156 7 N -0.713 5.713 8 C 0.528 3.472 9 O -0.581 6.581 10 C -0.115 4.115 11 H 0.105 0.895 12 C -0.082 4.082 13 C -0.129 4.129 14 C 0.172 3.828 15 N -0.605 5.605 16 C -0.264 4.264 17 H 0.076 0.924 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.283 1.283 22 H -0.268 1.268 23 H -0.296 1.296 24 C 0.165 3.835 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.410 0.590 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.058 0.942 41 H -0.009 1.009 42 H 0.249 0.751 43 H 0.004 0.996 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 13.764 -9.399 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.153 4.153 4 C 0.032 3.968 5 H 0.082 0.918 6 C -0.215 4.215 7 N -0.365 5.365 8 C 0.314 3.686 9 O -0.461 6.461 10 C -0.138 4.138 11 H 0.123 0.877 12 C -0.120 4.120 13 C -0.168 4.168 14 C 0.047 3.953 15 N -0.328 5.328 16 C -0.393 4.393 17 H 0.094 0.906 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.796 3.204 21 H -0.210 1.210 22 H -0.193 1.193 23 H -0.223 1.223 24 C 0.038 3.962 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.246 0.754 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.009 0.991 42 H 0.059 0.941 43 H 0.022 0.978 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.444 13.616 -10.020 18.092 hybrid contribution -0.217 -0.745 1.184 1.416 sum -6.661 12.871 -8.836 16.973 Atomic orbital electron populations 1.21740 0.94729 1.01697 1.02426 1.21546 0.96724 0.96957 1.01481 1.21868 0.91738 0.97167 1.04481 1.21092 0.95013 0.94360 0.86321 0.91845 1.22119 1.00500 0.95505 1.03349 1.46099 1.17008 1.58916 1.14470 1.20724 0.81511 0.76558 0.89771 1.90621 1.57643 1.59974 1.37846 1.21862 0.97816 0.99397 0.94691 0.87736 1.21113 0.94555 0.99544 0.96774 1.22032 0.98866 0.99103 0.96781 1.20659 0.83605 0.92039 0.99018 1.44293 1.10652 1.67708 1.10098 1.19558 1.15723 1.06532 0.97518 0.90595 1.25817 1.01096 0.94449 1.03192 1.70208 1.45350 1.07296 1.35371 0.85290 0.77344 0.77677 0.80089 1.20967 1.19297 1.22286 1.20881 0.94856 0.91817 0.88627 0.91737 0.93307 0.92123 0.93032 0.93123 0.89928 0.88714 0.94530 0.89947 0.91225 0.75352 0.91571 0.93814 0.92111 0.91176 0.92314 0.99073 0.94143 0.97834 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.91 71.98 0.71 -1.58 16 2 C -0.13 -2.38 5.82 30.60 0.18 -2.20 16 3 C -0.11 -1.73 4.75 30.59 0.15 -1.58 16 4 C 0.14 2.83 2.57 44.99 0.12 2.95 16 5 H 0.06 1.63 7.58 -2.39 -0.02 1.62 16 6 C -0.16 -2.87 9.48 71.98 0.68 -2.19 16 7 N -0.71 -17.38 4.44 -442.53 -1.96 -19.35 16 8 C 0.53 17.02 7.12 87.66 0.62 17.65 16 9 O -0.58 -22.44 15.64 -3.04 -0.05 -22.49 16 10 C -0.11 -3.95 2.69 -11.32 -0.03 -3.98 16 11 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 12 C -0.08 -2.99 4.46 30.62 0.14 -2.85 16 13 C -0.13 -4.99 6.08 30.67 0.19 -4.80 16 14 C 0.17 8.45 5.31 86.36 0.46 8.91 16 15 N -0.60 -29.78 2.99 -698.26 -2.09 -31.87 16 16 C -0.26 -13.95 9.59 84.03 0.81 -13.14 16 17 H 0.08 3.79 7.89 -2.91 -0.02 3.76 16 18 C -0.05 -2.74 4.91 84.86 0.42 -2.32 16 19 N -0.94 -55.08 11.18 21.65 0.24 -54.84 16 20 Si 0.97 43.64 29.59 68.60 2.03 45.67 16 21 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.30 -13.58 7.11 99.48 0.71 -12.88 16 24 C 0.16 6.63 5.68 86.51 0.49 7.12 16 25 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 1.10 7.75 -2.39 -0.02 1.09 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.41 8.50 8.17 -92.70 -0.76 7.74 16 36 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 37 H 0.04 1.73 8.13 -2.39 -0.02 1.72 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 40 H 0.06 3.22 6.02 -2.39 -0.01 3.20 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.07 2.61 7.55 -2.39 -0.02 2.60 16 Total: -1.00 -65.85 346.99 3.29 -62.56 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.19 Total: 18.33 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 4.92 Total: 1.98 kcal Atomic # 7 Polarization: -102.25 SS G_CDS: -3.81 Total: -106.06 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.05 Total: -22.49 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -65.85 3.29 -62.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051053350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.665 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds