Wall clock time and date at job start Mon Mar 30 2020 00:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47008 * 2 1 4 4 C 1.52999 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47271 * 305.00165 * 4 3 2 6 6 C 1.53001 * 109.46909 * 185.00047 * 4 3 2 7 7 N 1.46503 * 109.47250 * 65.00486 * 4 3 2 8 8 C 1.34771 * 120.00083 * 205.00331 * 7 4 3 9 9 O 1.21285 * 119.99688 * 359.97438 * 8 7 4 10 10 C 1.50700 * 120.00184 * 180.02562 * 8 7 4 11 11 H 1.09003 * 109.49499 * 300.06116 * 10 8 7 12 12 C 1.53040 * 109.49878 * 180.02562 * 10 8 7 13 13 C 1.53038 * 109.53836 * 178.68239 * 12 10 8 14 14 C 1.53201 * 109.31528 * 61.35767 * 13 12 10 15 15 N 1.46920 * 108.77527 * 305.37044 * 14 13 12 16 16 C 1.36935 * 120.62780 * 233.58477 * 15 14 13 17 17 H 1.08003 * 120.00269 * 152.40570 * 16 15 14 18 18 C 1.38814 * 120.00333 * 332.40149 * 16 15 14 19 19 N 1.31628 * 119.99678 * 334.90680 * 18 16 15 20 20 Si 1.86797 * 120.00559 * 154.90465 * 18 16 15 21 21 H 1.48500 * 109.46719 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47282 * 240.00476 * 20 18 16 23 23 H 1.48501 * 109.47414 * 119.99877 * 20 18 16 24 24 C 1.46929 * 118.74324 * 53.85338 * 15 14 13 25 25 H 1.08996 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47183 * 299.99791 * 1 2 3 27 27 H 1.08999 * 109.47143 * 59.99788 * 1 2 3 28 28 H 1.09004 * 109.46751 * 240.00813 * 2 1 3 29 29 H 1.08992 * 109.47402 * 120.00430 * 2 1 3 30 30 H 1.09001 * 109.46978 * 60.00083 * 3 2 1 31 31 H 1.08999 * 109.47341 * 300.00090 * 3 2 1 32 32 H 1.08999 * 109.47092 * 60.00398 * 6 4 3 33 33 H 1.09001 * 109.46779 * 180.02562 * 6 4 3 34 34 H 1.08992 * 109.47250 * 300.00131 * 6 4 3 35 35 H 0.97000 * 119.99884 * 24.99516 * 7 4 3 36 36 H 1.08994 * 109.46360 * 58.66013 * 12 10 8 37 37 H 1.09004 * 109.44184 * 298.68947 * 12 10 8 38 38 H 1.08997 * 109.49927 * 301.41089 * 13 12 10 39 39 H 1.08997 * 109.52467 * 181.32690 * 13 12 10 40 40 H 1.08993 * 109.58505 * 185.57561 * 14 13 12 41 41 H 1.09000 * 109.70093 * 65.22330 * 14 13 12 42 42 H 0.96999 * 119.99912 * 354.25691 * 19 18 16 43 43 H 1.09000 * 109.58137 * 65.93072 * 24 15 14 44 44 H 1.08994 * 109.58754 * 186.34827 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8426 6 6 4.0799 2.8796 0.1264 7 7 4.0589 0.8587 -1.2509 8 6 5.2808 0.2922 -1.2981 9 8 5.9758 0.2660 -0.3045 10 6 5.7840 -0.3079 -2.5857 11 1 5.1112 -1.1047 -2.9030 12 6 7.1865 -0.8805 -2.3686 13 6 7.6851 -1.5192 -3.6669 14 6 7.7635 -0.4492 -4.7605 15 7 6.4539 0.2068 -4.8749 16 6 5.8170 0.2869 -6.0845 17 1 4.7391 0.3418 -6.1247 18 6 6.5567 0.2977 -7.2591 19 7 7.8033 0.7201 -7.2479 20 14 5.7832 -0.2874 -8.8555 21 1 4.3817 -0.7077 -8.6015 22 1 6.5566 -1.4379 -9.3878 23 1 5.7959 0.8186 -9.8464 24 6 5.8433 0.7807 -3.6680 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7162 3.3140 1.0576 33 1 5.1699 2.8796 0.1264 34 1 3.7169 3.4689 -0.7156 35 1 3.5031 0.8799 -2.0456 36 1 7.1532 -1.6346 -1.5824 37 1 7.8642 -0.0789 -2.0747 38 1 6.9944 -2.3041 -3.9749 39 1 8.6743 -1.9477 -3.5056 40 1 8.0226 -0.9162 -5.7107 41 1 8.5206 0.2897 -4.4981 42 1 8.1789 1.1014 -6.4389 43 1 6.4466 1.6174 -3.3159 44 1 4.8351 1.1256 -3.8972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051053351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:52 Heat of formation + Delta-G solvation = -51.725736 kcal Electronic energy + Delta-G solvation = -21481.345000 eV Core-core repulsion = 18432.805507 eV Total energy + Delta-G solvation = -3048.539492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.92334 -37.50856 -36.45739 -33.54046 -33.31434 -31.32156 -30.28242 -29.51276 -26.86832 -25.09001 -23.62843 -22.24065 -21.84827 -20.91372 -20.22969 -19.05921 -17.50780 -16.63690 -16.24975 -15.07179 -14.82836 -14.47647 -14.19615 -14.07669 -13.66122 -13.57665 -13.50186 -12.98193 -12.84632 -12.74240 -12.48305 -12.26539 -12.21179 -11.80701 -11.62973 -11.12244 -11.00524 -10.89919 -10.77025 -10.75844 -10.66151 -10.24457 -10.10572 -10.03668 -9.93210 -9.42045 -9.23647 -8.93324 -8.38675 -6.93146 -6.09905 -3.27079 2.95074 3.38148 3.49155 3.52100 3.64961 4.48395 4.55971 4.78298 4.78696 5.01712 5.18248 5.25289 5.28301 5.31786 5.35572 5.43545 5.45960 5.58176 5.62245 5.63870 5.70849 5.80891 5.85386 5.92244 5.95699 6.05106 6.10260 6.13074 6.20949 6.27279 6.45105 6.54667 6.61840 6.63133 6.72305 6.73758 7.10985 7.21342 7.69791 7.95775 8.49774 8.54272 9.07101 9.80733 10.25189 11.18546 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.004813 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.705596 B = 5815.609060 C = 6533.940491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.127 4.127 4 C 0.140 3.860 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.728 5.728 8 C 0.524 3.476 9 O -0.549 6.549 10 C -0.125 4.125 11 H 0.093 0.907 12 C -0.086 4.086 13 C -0.137 4.137 14 C 0.147 3.853 15 N -0.596 5.596 16 C -0.353 4.353 17 H 0.057 0.943 18 C -0.022 4.022 19 N -0.915 5.915 20 Si 1.069 2.931 21 H -0.292 1.292 22 H -0.290 1.290 23 H -0.294 1.294 24 C 0.163 3.837 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.401 0.599 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.017 0.983 42 H 0.270 0.730 43 H 0.020 0.980 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 -0.328 13.230 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.165 4.165 4 C 0.035 3.965 5 H 0.102 0.898 6 C -0.222 4.222 7 N -0.380 5.380 8 C 0.312 3.688 9 O -0.426 6.426 10 C -0.148 4.148 11 H 0.111 0.889 12 C -0.125 4.125 13 C -0.176 4.176 14 C 0.022 3.978 15 N -0.320 5.320 16 C -0.482 4.482 17 H 0.075 0.925 18 C -0.225 4.225 19 N -0.555 5.555 20 Si 0.899 3.101 21 H -0.218 1.218 22 H -0.216 1.216 23 H -0.221 1.221 24 C 0.036 3.964 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.035 0.965 42 H 0.081 0.919 43 H 0.038 0.962 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.242 -0.642 12.312 16.028 hybrid contribution -0.649 0.408 1.294 1.504 sum -10.891 -0.234 13.606 17.430 Atomic orbital electron populations 1.21773 0.95849 1.01627 1.01689 1.21537 0.95699 0.96593 1.02515 1.21928 0.94061 0.97500 1.02962 1.20928 0.93199 0.94381 0.87948 0.89751 1.22178 1.02287 0.96069 1.01669 1.46175 1.18315 1.60277 1.13276 1.20984 0.80552 0.76733 0.90568 1.90630 1.56277 1.58539 1.37202 1.22031 0.98873 1.00941 0.92974 0.88934 1.21176 0.94343 0.99766 0.97171 1.22091 0.99819 0.99573 0.96165 1.21004 0.87006 0.92348 0.97467 1.44119 1.20263 1.63650 1.03922 1.19999 0.91662 1.52400 0.84113 0.92503 1.25854 0.97054 0.98717 1.00853 1.70716 1.16148 1.37518 1.31085 0.83477 0.74590 0.76585 0.75433 1.21827 1.21622 1.22113 1.20828 0.97459 0.91489 0.86614 0.92802 0.92898 0.92677 0.91641 0.92047 0.90645 0.91285 0.92028 0.91990 0.92407 0.76476 0.92763 0.92173 0.92348 0.92698 0.90155 0.96456 0.91865 0.96222 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.13 -1.11 5.82 -26.73 -0.16 -1.27 16 3 C -0.13 -1.09 4.75 -26.73 -0.13 -1.22 16 4 C 0.14 1.58 2.57 -67.93 -0.17 1.41 16 5 H 0.08 1.09 7.58 -51.93 -0.39 0.69 16 6 C -0.16 -1.82 9.48 37.16 0.35 -1.47 16 7 N -0.73 -9.50 4.44 -53.81 -0.24 -9.74 16 8 C 0.52 8.71 7.12 -10.99 -0.08 8.63 16 9 O -0.55 -10.66 15.64 5.55 0.09 -10.58 16 10 C -0.13 -2.22 2.69 -91.43 -0.25 -2.47 16 11 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 12 C -0.09 -1.59 4.46 -26.69 -0.12 -1.71 16 13 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 14 C 0.15 3.46 4.69 -3.71 -0.02 3.44 16 15 N -0.60 -14.63 2.85 -172.06 -0.49 -15.12 16 16 C -0.35 -9.57 9.49 -15.06 -0.14 -9.71 16 17 H 0.06 1.53 7.94 -52.48 -0.42 1.11 16 18 C -0.02 -0.62 4.68 -17.43 -0.08 -0.71 16 19 N -0.91 -27.10 12.40 55.49 0.69 -26.42 16 20 Si 1.07 24.83 29.99 -169.99 -5.10 19.73 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 C 0.16 3.35 5.68 -3.49 -0.02 3.33 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.40 4.68 8.17 -40.82 -0.33 4.35 16 36 H 0.05 0.95 8.07 -51.93 -0.42 0.53 16 37 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.08 2.10 6.29 -51.93 -0.33 1.77 16 41 H 0.02 0.42 7.86 -51.93 -0.41 0.01 16 42 H 0.27 8.11 6.71 -40.82 -0.27 7.83 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.11 7.55 -51.93 -0.39 0.71 16 LS Contribution 345.99 15.07 5.21 5.21 Total: -1.00 -30.93 345.99 -8.52 -39.45 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -8.08 Total: 2.80 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -0.60 Total: -5.35 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.04 Total: -51.27 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.58 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.10 Total: 19.73 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.93 -8.52 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051053351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.279 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds