Wall clock time and date at job start Mon Mar 30 2020 00:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47008 * 2 1 4 4 C 1.52999 * 109.47008 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47271 * 305.00165 * 4 3 2 6 6 C 1.53001 * 109.46909 * 185.00047 * 4 3 2 7 7 N 1.46503 * 109.47250 * 65.00486 * 4 3 2 8 8 C 1.34771 * 120.00083 * 205.00331 * 7 4 3 9 9 O 1.21285 * 119.99688 * 359.97438 * 8 7 4 10 10 C 1.50700 * 120.00184 * 180.02562 * 8 7 4 11 11 H 1.09003 * 109.49499 * 300.06116 * 10 8 7 12 12 C 1.53040 * 109.49878 * 180.02562 * 10 8 7 13 13 C 1.53038 * 109.53836 * 178.68239 * 12 10 8 14 14 C 1.53201 * 109.31528 * 61.35767 * 13 12 10 15 15 N 1.46920 * 108.77527 * 305.37044 * 14 13 12 16 16 C 1.36935 * 120.62780 * 233.58477 * 15 14 13 17 17 H 1.08003 * 120.00269 * 152.40570 * 16 15 14 18 18 C 1.38814 * 120.00333 * 332.40149 * 16 15 14 19 19 N 1.31628 * 119.99678 * 334.90680 * 18 16 15 20 20 Si 1.86797 * 120.00559 * 154.90465 * 18 16 15 21 21 H 1.48500 * 109.46719 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47282 * 240.00476 * 20 18 16 23 23 H 1.48501 * 109.47414 * 119.99877 * 20 18 16 24 24 C 1.46929 * 118.74324 * 53.85338 * 15 14 13 25 25 H 1.08996 * 109.47048 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47183 * 299.99791 * 1 2 3 27 27 H 1.08999 * 109.47143 * 59.99788 * 1 2 3 28 28 H 1.09004 * 109.46751 * 240.00813 * 2 1 3 29 29 H 1.08992 * 109.47402 * 120.00430 * 2 1 3 30 30 H 1.09001 * 109.46978 * 60.00083 * 3 2 1 31 31 H 1.08999 * 109.47341 * 300.00090 * 3 2 1 32 32 H 1.08999 * 109.47092 * 60.00398 * 6 4 3 33 33 H 1.09001 * 109.46779 * 180.02562 * 6 4 3 34 34 H 1.08992 * 109.47250 * 300.00131 * 6 4 3 35 35 H 0.97000 * 119.99884 * 24.99516 * 7 4 3 36 36 H 1.08994 * 109.46360 * 58.66013 * 12 10 8 37 37 H 1.09004 * 109.44184 * 298.68947 * 12 10 8 38 38 H 1.08997 * 109.49927 * 301.41089 * 13 12 10 39 39 H 1.08997 * 109.52467 * 181.32690 * 13 12 10 40 40 H 1.08993 * 109.58505 * 185.57561 * 14 13 12 41 41 H 1.09000 * 109.70093 * 65.22330 * 14 13 12 42 42 H 0.96999 * 119.99912 * 354.25691 * 19 18 16 43 43 H 1.09000 * 109.58137 * 65.93072 * 24 15 14 44 44 H 1.08994 * 109.58754 * 186.34827 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9329 0.8533 0.8426 6 6 4.0799 2.8796 0.1264 7 7 4.0589 0.8587 -1.2509 8 6 5.2808 0.2922 -1.2981 9 8 5.9758 0.2660 -0.3045 10 6 5.7840 -0.3079 -2.5857 11 1 5.1112 -1.1047 -2.9030 12 6 7.1865 -0.8805 -2.3686 13 6 7.6851 -1.5192 -3.6669 14 6 7.7635 -0.4492 -4.7605 15 7 6.4539 0.2068 -4.8749 16 6 5.8170 0.2869 -6.0845 17 1 4.7391 0.3418 -6.1247 18 6 6.5567 0.2977 -7.2591 19 7 7.8033 0.7201 -7.2479 20 14 5.7832 -0.2874 -8.8555 21 1 4.3817 -0.7077 -8.6015 22 1 6.5566 -1.4379 -9.3878 23 1 5.7959 0.8186 -9.8464 24 6 5.8433 0.7807 -3.6680 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7162 3.3140 1.0576 33 1 5.1699 2.8796 0.1264 34 1 3.7169 3.4689 -0.7156 35 1 3.5031 0.8799 -2.0456 36 1 7.1532 -1.6346 -1.5824 37 1 7.8642 -0.0789 -2.0747 38 1 6.9944 -2.3041 -3.9749 39 1 8.6743 -1.9477 -3.5056 40 1 8.0226 -0.9162 -5.7107 41 1 8.5206 0.2897 -4.4981 42 1 8.1789 1.1014 -6.4389 43 1 6.4466 1.6174 -3.3159 44 1 4.8351 1.1256 -3.8972 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051053351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:51 Heat of formation + Delta-G solvation = -69.787769 kcal Electronic energy + Delta-G solvation = -21482.128228 eV Core-core repulsion = 18432.805507 eV Total energy + Delta-G solvation = -3049.322721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.25899 -39.04308 -37.63252 -35.18294 -34.46681 -32.64030 -32.07608 -30.95263 -27.60676 -27.05072 -25.14072 -23.92667 -22.81228 -21.95618 -21.52996 -20.65053 -19.42895 -18.00812 -17.35772 -16.49485 -16.20193 -15.80770 -15.66716 -15.43322 -15.23156 -15.06453 -14.67725 -14.45623 -14.14294 -14.05006 -13.66716 -13.55406 -13.15864 -12.93623 -12.87282 -12.58951 -12.43024 -12.31990 -11.89993 -11.87422 -11.84439 -11.77725 -11.72948 -11.62941 -11.51689 -11.17497 -10.79435 -10.43373 -10.07491 -8.97240 -8.24811 -5.41044 1.59182 1.62365 1.69361 1.84841 2.22105 2.67117 3.22470 3.45078 3.69102 3.76932 3.87518 3.99340 4.04130 4.09042 4.23850 4.34839 4.39135 4.45606 4.47693 4.61319 4.64413 4.74858 4.76048 4.80097 4.89467 4.93298 4.99236 5.02704 5.05979 5.07057 5.13412 5.24188 5.26766 5.28162 5.31059 5.45328 5.47068 5.60370 5.84573 6.38244 6.52550 7.01961 7.23551 7.75556 8.20709 9.00633 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019566 B = 0.004813 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.705596 B = 5815.609060 C = 6533.940491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.117 4.117 4 C 0.138 3.862 5 H 0.070 0.930 6 C -0.160 4.160 7 N -0.713 5.713 8 C 0.528 3.472 9 O -0.579 6.579 10 C -0.114 4.114 11 H 0.103 0.897 12 C -0.082 4.082 13 C -0.124 4.124 14 C 0.152 3.848 15 N -0.613 5.613 16 C -0.354 4.354 17 H 0.060 0.940 18 C -0.075 4.075 19 N -0.945 5.945 20 Si 1.119 2.881 21 H -0.269 1.269 22 H -0.290 1.290 23 H -0.293 1.293 24 C 0.166 3.834 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.031 0.969 34 H 0.063 0.937 35 H 0.409 0.591 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.049 0.951 41 H -0.001 1.001 42 H 0.253 0.747 43 H 0.005 0.995 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.361 -0.716 13.963 19.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.155 4.155 4 C 0.034 3.966 5 H 0.088 0.912 6 C -0.218 4.218 7 N -0.365 5.365 8 C 0.314 3.686 9 O -0.459 6.459 10 C -0.137 4.137 11 H 0.121 0.879 12 C -0.120 4.120 13 C -0.163 4.163 14 C 0.027 3.973 15 N -0.337 5.337 16 C -0.484 4.484 17 H 0.078 0.922 18 C -0.271 4.271 19 N -0.586 5.586 20 Si 0.944 3.056 21 H -0.193 1.193 22 H -0.216 1.216 23 H -0.221 1.221 24 C 0.040 3.960 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.246 0.754 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.067 0.933 41 H 0.017 0.983 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.632 -1.020 13.074 18.208 hybrid contribution 0.056 0.585 1.139 1.281 sum -12.575 -0.435 14.213 18.983 Atomic orbital electron populations 1.21749 0.94740 1.01891 1.02304 1.21529 0.96655 0.96495 1.01714 1.21883 0.91522 0.97714 1.04341 1.21089 0.95143 0.94016 0.86332 0.91225 1.22149 1.00340 0.96098 1.03263 1.46113 1.17105 1.58807 1.14464 1.20679 0.81388 0.76939 0.89552 1.90624 1.57375 1.59942 1.37932 1.21834 0.98999 1.00172 0.92691 0.87909 1.21119 0.94339 0.99669 0.96878 1.21945 1.01285 0.98126 0.94962 1.20870 0.86315 0.92802 0.97361 1.44354 1.20495 1.64380 1.04478 1.20303 0.91995 1.50888 0.85188 0.92175 1.27211 0.96972 0.98755 1.04205 1.70847 1.17520 1.39942 1.30335 0.82812 0.74957 0.75966 0.71886 1.19350 1.21612 1.22055 1.20874 0.97348 0.91850 0.85967 0.92791 0.91958 0.92372 0.92767 0.92605 0.88759 0.90343 0.89689 0.94927 0.91760 0.75435 0.91181 0.93572 0.91943 0.90654 0.93256 0.98258 0.93660 0.97703 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.13 -1.95 5.82 30.60 0.18 -1.77 16 3 C -0.12 -1.68 4.75 30.60 0.15 -1.54 16 4 C 0.14 2.88 2.57 44.99 0.12 3.00 16 5 H 0.07 1.71 7.58 -2.39 -0.02 1.69 16 6 C -0.16 -3.30 9.48 71.98 0.68 -2.62 16 7 N -0.71 -17.50 4.44 -442.54 -1.96 -19.47 16 8 C 0.53 16.98 7.12 87.66 0.62 17.60 16 9 O -0.58 -22.14 15.64 -3.04 -0.05 -22.19 16 10 C -0.11 -3.92 2.69 -11.32 -0.03 -3.95 16 11 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 12 C -0.08 -2.94 4.46 30.62 0.14 -2.80 16 13 C -0.12 -4.71 6.08 30.67 0.19 -4.52 16 14 C 0.15 7.28 4.69 86.37 0.41 7.69 16 15 N -0.61 -30.24 2.85 -698.28 -1.99 -32.23 16 16 C -0.35 -19.16 9.49 84.03 0.80 -18.36 16 17 H 0.06 3.17 7.94 -2.91 -0.02 3.14 16 18 C -0.08 -4.19 4.68 84.86 0.40 -3.80 16 19 N -0.94 -57.33 12.40 21.65 0.27 -57.06 16 20 Si 1.12 49.81 29.99 68.60 2.06 51.87 16 21 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 24 C 0.17 6.74 5.68 86.51 0.49 7.23 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.95 7.75 -2.38 -0.02 0.93 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.41 8.70 8.17 -92.71 -0.76 7.94 16 36 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 37 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 38 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.05 2.65 6.29 -2.39 -0.02 2.64 16 41 H 0.00 -0.03 7.86 -2.39 -0.02 -0.05 16 42 H 0.25 15.82 6.71 -92.71 -0.62 15.20 16 43 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 44 H 0.07 2.60 7.55 -2.39 -0.02 2.58 16 Total: -1.00 -67.23 345.99 3.51 -63.72 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.34 Total: 20.40 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 4.84 Total: -5.04 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.68 Total: -108.76 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 49.81 SS G_CDS: 2.06 Total: 51.87 kcal Total: -67.23 3.51 -63.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051053351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.063 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds