Wall clock time and date at job start Mon Mar 30 2020 00:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 C 1.52997 * 109.47061 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47298 * 304.99612 * 4 3 2 6 6 C 1.53007 * 109.47141 * 184.99785 * 4 3 2 7 7 N 1.46498 * 109.47056 * 64.99972 * 4 3 2 8 8 C 1.34779 * 119.99946 * 204.99737 * 7 4 3 9 9 O 1.21282 * 120.00327 * 0.02562 * 8 7 4 10 10 C 1.50703 * 120.00149 * 179.97438 * 8 7 4 11 11 H 1.09002 * 109.52299 * 59.92269 * 10 8 7 12 12 C 1.53035 * 109.50058 * 180.02562 * 10 8 7 13 13 C 1.53035 * 109.54002 * 181.31938 * 12 10 8 14 14 C 1.53198 * 109.31186 * 298.63057 * 13 12 10 15 15 N 1.46930 * 108.76937 * 54.63565 * 14 13 12 16 16 C 1.36940 * 120.62593 * 126.37009 * 15 14 13 17 17 H 1.08000 * 119.99906 * 333.24499 * 16 15 14 18 18 C 1.38813 * 119.99775 * 153.24283 * 16 15 14 19 19 N 1.31623 * 119.99991 * 158.94626 * 18 16 15 20 20 Si 1.86799 * 120.00137 * 339.22901 * 18 16 15 21 21 H 1.48494 * 109.47541 * 95.07352 * 20 18 16 22 22 H 1.48507 * 109.46933 * 215.07796 * 20 18 16 23 23 H 1.48505 * 109.46951 * 335.07074 * 20 18 16 24 24 C 1.46926 * 118.74001 * 306.64323 * 15 14 13 25 25 H 1.08999 * 109.47361 * 299.99895 * 1 2 3 26 26 H 1.08994 * 109.46815 * 60.00662 * 1 2 3 27 27 H 1.09004 * 109.46266 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47794 * 239.99804 * 2 1 3 29 29 H 1.09003 * 109.47051 * 119.99276 * 2 1 3 30 30 H 1.08999 * 109.47026 * 59.99900 * 3 2 1 31 31 H 1.09000 * 109.46841 * 300.00019 * 3 2 1 32 32 H 1.09004 * 109.46883 * 300.00080 * 6 4 3 33 33 H 1.09002 * 109.47032 * 60.00275 * 6 4 3 34 34 H 1.09003 * 109.47081 * 180.02562 * 6 4 3 35 35 H 0.96996 * 120.00253 * 25.00029 * 7 4 3 36 36 H 1.08999 * 109.46415 * 61.29221 * 12 10 8 37 37 H 1.09010 * 109.44855 * 301.33221 * 12 10 8 38 38 H 1.09004 * 109.49584 * 178.68636 * 13 12 10 39 39 H 1.09001 * 109.50249 * 58.58628 * 13 12 10 40 40 H 1.09001 * 109.58746 * 294.85175 * 14 13 12 41 41 H 1.08994 * 109.58778 * 174.42077 * 14 13 12 42 42 H 0.96994 * 120.00386 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58336 * 173.15088 * 24 15 14 44 44 H 1.09001 * 109.58321 * 293.56557 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8428 6 6 4.0799 2.8797 0.1263 7 7 4.0588 0.8587 -1.2509 8 6 5.2809 0.2922 -1.2980 9 8 5.9757 0.2654 -0.3043 10 6 5.7836 -0.3090 -2.5853 11 1 5.8194 0.4601 -3.3569 12 6 7.1862 -0.8812 -2.3683 13 6 7.7108 -1.4626 -3.6832 14 6 6.7899 -2.5994 -4.1376 15 7 5.4127 -2.0924 -4.2088 16 6 4.6764 -2.2319 -5.3550 17 1 5.1737 -2.3010 -6.3112 18 6 3.2909 -2.2844 -5.2877 19 7 2.5692 -2.0038 -6.3521 20 14 2.4504 -2.7455 -3.6845 21 1 2.0841 -1.5112 -2.9447 22 1 1.2238 -3.5302 -3.9765 23 1 3.3752 -3.5622 -2.8579 24 6 4.8427 -1.4276 -3.0291 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7168 3.4690 -0.7158 33 1 3.7162 3.3142 1.0575 34 1 5.1699 2.8798 0.1263 35 1 3.5031 0.8798 -2.0455 36 1 7.1452 -1.6673 -1.6144 37 1 7.8534 -0.0882 -2.0301 38 1 8.7190 -1.8490 -3.5334 39 1 7.7289 -0.6826 -4.4444 40 1 6.8408 -3.4194 -3.4213 41 1 7.1013 -2.9509 -5.1212 42 1 1.6011 -2.0401 -6.3051 43 1 3.8697 -1.0062 -3.2816 44 1 4.7315 -2.1502 -2.2206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051053355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:57 Heat of formation + Delta-G solvation = -43.507871 kcal Electronic energy + Delta-G solvation = -22077.644079 eV Core-core repulsion = 19029.460940 eV Total energy + Delta-G solvation = -3048.183139 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.93666 -37.59014 -36.41611 -33.42764 -33.08501 -31.54028 -30.77730 -29.83739 -26.76539 -25.27134 -23.89040 -22.50672 -21.73854 -20.81399 -20.15640 -19.26158 -17.06805 -16.67331 -16.19045 -15.50676 -14.81673 -14.54274 -14.20728 -14.03601 -13.90406 -13.60807 -13.33605 -13.09161 -12.80481 -12.73368 -12.35346 -12.23743 -12.14898 -12.05612 -11.61340 -11.51707 -11.04336 -10.97404 -10.81747 -10.68156 -10.59674 -10.51495 -10.16133 -10.06540 -9.84027 -9.54022 -9.27699 -8.87981 -8.67746 -7.05014 -6.01594 -3.36989 2.96901 3.20908 3.41990 3.44257 3.47255 4.45122 4.59425 4.82281 4.91028 4.95273 5.19876 5.22816 5.29094 5.31548 5.36871 5.46128 5.52904 5.54258 5.66600 5.73591 5.74832 5.80456 5.85383 5.95529 5.98173 6.08959 6.14194 6.16535 6.22527 6.29835 6.31802 6.39145 6.51572 6.55703 6.57797 6.68238 6.72940 6.96331 7.74298 7.88544 8.26786 8.52366 8.86744 9.64724 10.03013 11.14009 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.008481 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.014707 B = 3300.557298 C = 4786.805174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C -0.126 4.126 4 C 0.139 3.861 5 H 0.086 0.914 6 C -0.161 4.161 7 N -0.728 5.728 8 C 0.524 3.476 9 O -0.550 6.550 10 C -0.128 4.128 11 H 0.098 0.902 12 C -0.087 4.087 13 C -0.136 4.136 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.259 4.259 17 H 0.088 0.912 18 C 0.023 3.977 19 N -0.905 5.905 20 Si 0.876 3.124 21 H -0.285 1.285 22 H -0.302 1.302 23 H -0.270 1.270 24 C 0.143 3.857 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.403 0.597 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.064 0.936 42 H 0.263 0.737 43 H 0.072 0.928 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.702 7.050 11.520 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.164 4.164 4 C 0.034 3.966 5 H 0.104 0.896 6 C -0.220 4.220 7 N -0.381 5.381 8 C 0.311 3.689 9 O -0.428 6.428 10 C -0.151 4.151 11 H 0.116 0.884 12 C -0.126 4.126 13 C -0.175 4.175 14 C 0.020 3.980 15 N -0.326 5.326 16 C -0.387 4.387 17 H 0.106 0.894 18 C -0.176 4.176 19 N -0.548 5.548 20 Si 0.706 3.294 21 H -0.213 1.213 22 H -0.231 1.231 23 H -0.195 1.195 24 C 0.016 3.984 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.237 0.763 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.042 0.958 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.034 7.014 12.131 14.051 hybrid contribution -0.987 -0.177 0.445 1.097 sum 0.047 6.836 12.575 14.314 Atomic orbital electron populations 1.21758 0.95799 1.01745 1.01546 1.21613 0.95932 0.96589 1.02845 1.21921 0.93944 0.97621 1.02883 1.20955 0.93408 0.94272 0.87937 0.89636 1.22167 1.02055 0.96077 1.01675 1.46222 1.18258 1.60053 1.13540 1.20934 0.80752 0.76497 0.90710 1.90619 1.56470 1.58640 1.37049 1.21922 0.98631 1.00348 0.94175 0.88378 1.21182 0.93822 1.00040 0.97513 1.22041 0.98521 0.99949 0.97026 1.21001 0.84366 0.93276 0.99398 1.44323 1.11776 1.64610 1.11857 1.18959 0.88669 1.45723 0.85364 0.89429 1.25280 0.96212 0.99651 0.96428 1.69841 1.05610 1.50076 1.29291 0.87063 0.78853 0.78673 0.84770 1.21338 1.23072 1.19525 1.21168 0.95210 0.91903 0.90133 0.92920 0.92641 0.92763 0.91326 0.91993 0.90605 0.91288 0.92490 0.91964 0.92089 0.76257 0.92004 0.92373 0.92303 0.91908 0.95791 0.91721 0.92735 0.90955 0.95351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 37.16 0.37 -1.33 16 2 C -0.13 -1.67 5.82 -26.73 -0.16 -1.82 16 3 C -0.13 -1.38 4.75 -26.73 -0.13 -1.50 16 4 C 0.14 1.78 2.57 -67.93 -0.17 1.61 16 5 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 6 C -0.16 -1.83 9.48 37.16 0.35 -1.48 16 7 N -0.73 -10.98 4.43 -53.80 -0.24 -11.21 16 8 C 0.52 9.21 7.12 -10.98 -0.08 9.14 16 9 O -0.55 -10.85 15.64 5.56 0.09 -10.76 16 10 C -0.13 -2.32 2.66 -91.88 -0.24 -2.57 16 11 H 0.10 1.76 8.14 -51.93 -0.42 1.33 16 12 C -0.09 -1.50 4.46 -26.70 -0.12 -1.62 16 13 C -0.14 -2.26 6.08 -26.61 -0.16 -2.42 16 14 C 0.15 2.84 6.52 -3.71 -0.02 2.82 16 15 N -0.60 -14.00 2.78 -172.58 -0.48 -14.48 16 16 C -0.26 -7.02 10.04 -15.06 -0.15 -7.18 16 17 H 0.09 2.53 8.05 -52.49 -0.42 2.11 16 18 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 19 N -0.91 -26.87 13.97 55.49 0.78 -26.09 16 20 Si 0.88 21.55 24.36 -169.99 -4.14 17.41 16 21 H -0.29 -6.46 6.30 56.52 0.36 -6.10 16 22 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 23 H -0.27 -6.72 6.49 56.52 0.37 -6.35 16 24 C 0.14 3.03 3.31 -3.94 -0.01 3.02 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.07 1.05 7.35 -51.93 -0.38 0.67 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.40 5.91 8.14 -40.82 -0.33 5.58 16 36 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 37 H 0.06 0.95 8.07 -51.92 -0.42 0.53 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.07 1.61 4.10 -51.93 -0.21 1.40 16 44 H 0.03 0.63 7.01 -51.93 -0.36 0.27 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -30.47 339.55 -7.57 -38.04 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -8.07 Total: 4.75 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: -0.62 Total: -2.77 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: 0.06 Total: -51.79 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.14 Total: 17.41 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.47 -7.57 -38.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051053355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.470 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds