Wall clock time and date at job start Mon Mar 30 2020 00:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 C 1.52997 * 109.47061 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47298 * 304.99612 * 4 3 2 6 6 C 1.53007 * 109.47141 * 184.99785 * 4 3 2 7 7 N 1.46498 * 109.47056 * 64.99972 * 4 3 2 8 8 C 1.34779 * 119.99946 * 204.99737 * 7 4 3 9 9 O 1.21282 * 120.00327 * 0.02562 * 8 7 4 10 10 C 1.50703 * 120.00149 * 179.97438 * 8 7 4 11 11 H 1.09002 * 109.52299 * 59.92269 * 10 8 7 12 12 C 1.53035 * 109.50058 * 180.02562 * 10 8 7 13 13 C 1.53035 * 109.54002 * 181.31938 * 12 10 8 14 14 C 1.53198 * 109.31186 * 298.63057 * 13 12 10 15 15 N 1.46930 * 108.76937 * 54.63565 * 14 13 12 16 16 C 1.36940 * 120.62593 * 126.37009 * 15 14 13 17 17 H 1.08000 * 119.99906 * 333.24499 * 16 15 14 18 18 C 1.38813 * 119.99775 * 153.24283 * 16 15 14 19 19 N 1.31623 * 119.99991 * 158.94626 * 18 16 15 20 20 Si 1.86799 * 120.00137 * 339.22901 * 18 16 15 21 21 H 1.48494 * 109.47541 * 95.07352 * 20 18 16 22 22 H 1.48507 * 109.46933 * 215.07796 * 20 18 16 23 23 H 1.48505 * 109.46951 * 335.07074 * 20 18 16 24 24 C 1.46926 * 118.74001 * 306.64323 * 15 14 13 25 25 H 1.08999 * 109.47361 * 299.99895 * 1 2 3 26 26 H 1.08994 * 109.46815 * 60.00662 * 1 2 3 27 27 H 1.09004 * 109.46266 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47794 * 239.99804 * 2 1 3 29 29 H 1.09003 * 109.47051 * 119.99276 * 2 1 3 30 30 H 1.08999 * 109.47026 * 59.99900 * 3 2 1 31 31 H 1.09000 * 109.46841 * 300.00019 * 3 2 1 32 32 H 1.09004 * 109.46883 * 300.00080 * 6 4 3 33 33 H 1.09002 * 109.47032 * 60.00275 * 6 4 3 34 34 H 1.09003 * 109.47081 * 180.02562 * 6 4 3 35 35 H 0.96996 * 120.00253 * 25.00029 * 7 4 3 36 36 H 1.08999 * 109.46415 * 61.29221 * 12 10 8 37 37 H 1.09010 * 109.44855 * 301.33221 * 12 10 8 38 38 H 1.09004 * 109.49584 * 178.68636 * 13 12 10 39 39 H 1.09001 * 109.50249 * 58.58628 * 13 12 10 40 40 H 1.09001 * 109.58746 * 294.85175 * 14 13 12 41 41 H 1.08994 * 109.58778 * 174.42077 * 14 13 12 42 42 H 0.96994 * 120.00386 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.58336 * 173.15088 * 24 15 14 44 44 H 1.09001 * 109.58321 * 293.56557 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9330 0.8533 0.8428 6 6 4.0799 2.8797 0.1263 7 7 4.0588 0.8587 -1.2509 8 6 5.2809 0.2922 -1.2980 9 8 5.9757 0.2654 -0.3043 10 6 5.7836 -0.3090 -2.5853 11 1 5.8194 0.4601 -3.3569 12 6 7.1862 -0.8812 -2.3683 13 6 7.7108 -1.4626 -3.6832 14 6 6.7899 -2.5994 -4.1376 15 7 5.4127 -2.0924 -4.2088 16 6 4.6764 -2.2319 -5.3550 17 1 5.1737 -2.3010 -6.3112 18 6 3.2909 -2.2844 -5.2877 19 7 2.5692 -2.0038 -6.3521 20 14 2.4504 -2.7455 -3.6845 21 1 2.0841 -1.5112 -2.9447 22 1 1.2238 -3.5302 -3.9765 23 1 3.3752 -3.5622 -2.8579 24 6 4.8427 -1.4276 -3.0291 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0278 0.0005 28 1 1.8935 -0.5138 -0.8899 29 1 1.8934 -0.5137 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 3.7168 3.4690 -0.7158 33 1 3.7162 3.3142 1.0575 34 1 5.1699 2.8798 0.1263 35 1 3.5031 0.8798 -2.0455 36 1 7.1452 -1.6673 -1.6144 37 1 7.8534 -0.0882 -2.0301 38 1 8.7190 -1.8490 -3.5334 39 1 7.7289 -0.6826 -4.4444 40 1 6.8408 -3.4194 -3.4213 41 1 7.1013 -2.9509 -5.1212 42 1 1.6011 -2.0401 -6.3051 43 1 3.8697 -1.0062 -3.2816 44 1 4.7315 -2.1502 -2.2206 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051053355.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:56 Heat of formation + Delta-G solvation = -62.585721 kcal Electronic energy + Delta-G solvation = -22078.471357 eV Core-core repulsion = 19029.460940 eV Total energy + Delta-G solvation = -3049.010417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31584 -39.07568 -37.64994 -34.96569 -34.52421 -32.98427 -32.55475 -31.11130 -27.64522 -27.16001 -25.37551 -24.13814 -22.83062 -21.94237 -21.48832 -20.78877 -18.90016 -18.22311 -17.46325 -17.11435 -16.25332 -15.77236 -15.74785 -15.39243 -15.35734 -15.00164 -14.82027 -14.49853 -14.17122 -14.03631 -13.76658 -13.63946 -13.43382 -13.20265 -12.96598 -12.67477 -12.52790 -12.44885 -12.27160 -11.90947 -11.78667 -11.72145 -11.67946 -11.65184 -11.56281 -11.33258 -10.74153 -10.68033 -10.10346 -8.98894 -8.17870 -5.49895 1.23867 1.40258 1.47356 1.56810 2.20266 2.37959 3.01886 3.28612 3.63742 3.76843 3.84598 3.95693 4.01161 4.02817 4.25106 4.31599 4.35682 4.42571 4.46943 4.54743 4.55832 4.72029 4.76564 4.77915 4.83498 4.86785 4.94302 4.99855 5.05540 5.09364 5.14273 5.20089 5.20467 5.23501 5.28111 5.38395 5.50827 5.57853 5.84340 6.12214 6.45965 6.87160 7.18253 7.58204 7.99999 9.01431 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014311 B = 0.008481 C = 0.005848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.014707 B = 3300.557298 C = 4786.805174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C -0.117 4.117 4 C 0.135 3.865 5 H 0.071 0.929 6 C -0.155 4.155 7 N -0.722 5.722 8 C 0.526 3.474 9 O -0.572 6.572 10 C -0.122 4.122 11 H 0.101 0.899 12 C -0.084 4.084 13 C -0.124 4.124 14 C 0.137 3.863 15 N -0.616 5.616 16 C -0.249 4.249 17 H 0.059 0.941 18 C -0.026 4.026 19 N -0.949 5.949 20 Si 0.932 3.068 21 H -0.258 1.258 22 H -0.313 1.313 23 H -0.274 1.274 24 C 0.146 3.854 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.047 0.953 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.040 0.960 35 H 0.405 0.595 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.031 0.969 41 H 0.062 0.938 42 H 0.263 0.737 43 H 0.061 0.939 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 8.296 13.550 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C -0.155 4.155 4 C 0.031 3.969 5 H 0.089 0.911 6 C -0.213 4.213 7 N -0.373 5.373 8 C 0.312 3.688 9 O -0.452 6.452 10 C -0.145 4.145 11 H 0.119 0.881 12 C -0.122 4.122 13 C -0.163 4.163 14 C 0.013 3.987 15 N -0.340 5.340 16 C -0.378 4.378 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.595 5.595 20 Si 0.761 3.239 21 H -0.184 1.184 22 H -0.242 1.242 23 H -0.200 1.200 24 C 0.020 3.980 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.240 0.760 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.049 0.951 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.142 8.283 14.192 16.472 hybrid contribution -0.956 -0.583 -0.209 1.139 sum 0.185 7.700 13.983 15.964 Atomic orbital electron populations 1.21759 0.94653 1.01749 1.02606 1.21621 0.96997 0.97392 1.01264 1.21895 0.92199 0.96819 1.04556 1.21155 0.94780 0.94806 0.86178 0.91082 1.22105 1.00698 0.95068 1.03403 1.46274 1.17342 1.59106 1.14567 1.20739 0.81375 0.76685 0.89976 1.90610 1.57271 1.59819 1.37486 1.21797 0.98632 0.99294 0.94743 0.88064 1.21170 0.93301 1.00193 0.97547 1.21933 0.99269 0.98616 0.96455 1.21212 0.83050 0.94727 0.99747 1.44453 1.12865 1.65455 1.11205 1.18896 0.88941 1.44168 0.85829 0.92337 1.25795 0.96875 1.00325 0.99188 1.69950 1.05798 1.52305 1.31462 0.86150 0.77174 0.79094 0.81481 1.18427 1.24177 1.19956 1.21056 0.95480 0.92491 0.89002 0.90745 0.92693 0.93370 0.94438 0.92057 0.87855 0.90586 0.91594 0.89524 0.94096 0.76008 0.92663 0.91018 0.89050 0.92103 0.95109 0.91916 0.92821 0.92125 0.96109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.14 -3.14 5.82 30.60 0.18 -2.96 16 3 C -0.12 -2.22 4.75 30.59 0.15 -2.07 16 4 C 0.13 3.17 2.57 44.99 0.12 3.28 16 5 H 0.07 1.91 7.58 -2.38 -0.02 1.89 16 6 C -0.15 -3.10 9.48 71.98 0.68 -2.41 16 7 N -0.72 -20.69 4.43 -442.52 -1.96 -22.65 16 8 C 0.53 17.79 7.12 87.66 0.62 18.42 16 9 O -0.57 -21.81 15.64 -3.04 -0.05 -21.85 16 10 C -0.12 -4.27 2.66 -11.61 -0.03 -4.30 16 11 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 12 C -0.08 -2.72 4.46 30.62 0.14 -2.58 16 13 C -0.12 -3.83 6.08 30.67 0.19 -3.64 16 14 C 0.14 5.22 6.52 86.36 0.56 5.78 16 15 N -0.62 -28.42 2.78 -699.92 -1.95 -30.37 16 16 C -0.25 -13.72 10.04 84.03 0.84 -12.87 16 17 H 0.06 3.51 8.05 -2.91 -0.02 3.48 16 18 C -0.03 -1.50 5.23 84.86 0.44 -1.05 16 19 N -0.95 -57.60 13.97 21.65 0.30 -57.30 16 20 Si 0.93 45.03 24.36 68.60 1.67 46.70 16 21 H -0.26 -11.19 6.30 99.48 0.63 -10.56 16 22 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 23 H -0.27 -13.31 6.49 99.48 0.65 -12.66 16 24 C 0.15 6.08 3.31 86.22 0.29 6.37 16 25 H 0.07 1.16 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 1.09 7.35 -2.39 -0.02 1.07 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.40 11.31 8.14 -92.71 -0.75 10.55 16 36 H 0.05 1.87 8.13 -2.39 -0.02 1.85 16 37 H 0.07 2.16 8.07 -2.38 -0.02 2.14 16 38 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 42 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 43 H 0.06 2.66 4.10 -2.39 -0.01 2.65 16 44 H 0.02 0.91 7.01 -2.39 -0.02 0.90 16 Total: -1.00 -66.02 339.55 2.96 -63.06 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.06 Total: 22.76 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: 4.89 Total: -0.35 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -3.61 Total: -110.32 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.67 Total: 46.70 kcal Total: -66.02 2.96 -63.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051053355.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.471 kcal (2) G-P(sol) polarization free energy of solvation -66.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds