Wall clock time and date at job start Mon Mar 30 2020 01:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47110 * 2 1 4 4 C 1.52996 * 109.47610 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47605 * 179.97438 * 4 3 2 6 6 C 1.34780 * 120.00218 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99897 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99893 * 179.72261 * 6 5 4 9 9 H 1.09010 * 109.49458 * 60.21518 * 8 6 5 10 10 C 1.53040 * 109.49630 * 180.27504 * 8 6 5 11 11 C 1.53045 * 109.53764 * 181.31854 * 10 8 6 12 12 C 1.53193 * 109.31244 * 298.63762 * 11 10 8 13 13 H 1.08999 * 109.58577 * 294.70399 * 12 11 10 14 14 C 1.52991 * 109.58326 * 174.42239 * 12 11 10 15 15 N 1.46921 * 108.77636 * 54.63427 * 12 11 10 16 16 C 1.36937 * 120.63171 * 126.40882 * 15 12 11 17 17 H 1.08000 * 119.99985 * 330.87386 * 16 15 12 18 18 C 1.38816 * 119.99875 * 150.86733 * 16 15 12 19 19 N 1.31622 * 119.99903 * 160.74928 * 18 16 15 20 20 Si 1.86799 * 120.00064 * 340.74335 * 18 16 15 21 21 H 1.48502 * 109.46880 * 92.28810 * 20 18 16 22 22 H 1.48496 * 109.47241 * 212.28807 * 20 18 16 23 23 H 1.48504 * 109.47166 * 332.29083 * 20 18 16 24 24 C 1.46927 * 118.73936 * 306.39068 * 15 12 11 25 25 H 1.09001 * 109.47044 * 60.00803 * 1 2 3 26 26 H 1.09007 * 109.47096 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47321 * 300.00029 * 1 2 3 28 28 H 1.08997 * 109.47321 * 239.99971 * 2 1 3 29 29 H 1.09001 * 109.47044 * 119.99197 * 2 1 3 30 30 H 1.09002 * 109.47759 * 59.99257 * 3 2 1 31 31 H 1.09004 * 109.47123 * 299.99933 * 3 2 1 32 32 H 1.09005 * 109.47215 * 59.99724 * 4 3 2 33 33 H 1.09004 * 109.47318 * 299.99792 * 4 3 2 34 34 H 0.97003 * 120.00065 * 359.97438 * 5 4 3 35 35 H 1.08997 * 109.46253 * 301.34390 * 10 8 6 36 36 H 1.08997 * 109.45578 * 61.31315 * 10 8 6 37 37 H 1.08996 * 109.49414 * 58.59177 * 11 10 8 38 38 H 1.09003 * 109.49603 * 178.65351 * 11 10 8 39 39 H 1.09001 * 109.47628 * 60.00086 * 14 12 11 40 40 H 1.09008 * 109.47115 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.47798 * 299.99745 * 14 12 11 42 42 H 0.97001 * 120.00073 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.59177 * 293.82245 * 24 15 12 44 44 H 1.09005 * 109.58536 * 173.39333 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0701 0.0010 7 8 6.1715 2.1483 0.0018 8 6 5.8856 4.4909 -0.0060 9 1 5.5240 5.0089 0.8824 10 6 7.4160 4.4917 -0.0103 11 6 7.9272 5.9340 0.0158 12 6 7.4398 6.6671 -1.2379 13 1 7.8943 6.2204 -2.1222 14 6 7.8286 8.1442 -1.1519 15 7 5.9777 6.5464 -1.3178 16 6 5.1916 7.6605 -1.4443 17 1 5.5213 8.6035 -1.0338 18 6 3.9709 7.5778 -2.1001 19 7 3.0560 8.5041 -1.9069 20 14 3.6268 6.1521 -3.2569 21 1 2.9619 5.0560 -2.5074 22 1 2.7393 6.6095 -4.3560 23 1 4.9058 5.6572 -3.8267 24 6 5.3751 5.2077 -1.2599 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 3.4279 3.5611 -0.0011 35 1 7.7819 3.9607 0.8685 36 1 7.7767 3.9950 -0.9109 37 1 7.5465 6.4388 0.9037 38 1 9.0170 5.9333 0.0369 39 1 8.9128 8.2310 -1.0800 40 1 7.4806 8.6641 -2.0446 41 1 7.3692 8.5903 -0.2699 42 1 2.2031 8.4466 -2.3655 43 1 5.6592 4.6403 -2.1462 44 1 4.2897 5.2972 -1.2133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058363849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:36 Heat of formation + Delta-G solvation = -42.739287 kcal Electronic energy + Delta-G solvation = -21586.298298 eV Core-core repulsion = 18538.148487 eV Total energy + Delta-G solvation = -3048.149811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.81354 -37.69062 -36.15582 -33.68359 -33.11865 -32.25779 -30.71961 -29.07822 -26.81421 -25.04617 -23.67537 -22.81313 -21.43713 -21.42827 -19.66059 -19.24642 -16.90236 -16.49660 -15.98848 -15.83500 -15.26904 -14.67435 -14.46408 -13.90894 -13.76593 -13.70495 -13.45302 -13.15872 -13.03531 -12.53490 -12.32144 -12.01202 -11.73150 -11.64879 -11.45354 -11.33608 -11.30409 -11.16568 -10.81810 -10.75238 -10.70794 -10.26252 -10.21538 -9.99340 -9.68215 -9.56854 -9.24364 -8.89786 -8.65990 -6.99033 -5.99462 -3.36962 2.95200 3.22383 3.41002 3.44183 3.48025 4.46758 4.67156 4.74775 4.75144 4.89098 5.17413 5.20357 5.22663 5.30698 5.39401 5.48267 5.53456 5.59540 5.64724 5.70463 5.77583 5.82785 5.94183 5.94762 6.07015 6.08813 6.13073 6.21683 6.31995 6.36280 6.42702 6.46021 6.53521 6.58151 6.63803 6.73600 7.01095 7.10795 7.70880 7.92496 8.31756 8.49541 8.89227 9.67397 10.05995 11.16008 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.006245 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.692155 B = 4482.380913 C = 5802.644193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.135 4.135 4 C 0.119 3.881 5 N -0.735 5.735 6 C 0.522 3.478 7 O -0.551 6.551 8 C -0.126 4.126 9 H 0.099 0.901 10 C -0.088 4.088 11 C -0.131 4.131 12 C 0.168 3.832 13 H 0.031 0.969 14 C -0.137 4.137 15 N -0.599 5.599 16 C -0.257 4.257 17 H 0.094 0.906 18 C 0.025 3.975 19 N -0.907 5.907 20 Si 0.876 3.124 21 H -0.289 1.289 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.142 3.858 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.404 0.596 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.262 0.738 43 H 0.028 0.972 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.084 -11.921 4.541 12.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.173 4.173 4 C -0.005 4.005 5 N -0.388 5.388 6 C 0.309 3.691 7 O -0.428 6.428 8 C -0.150 4.150 9 H 0.117 0.883 10 C -0.126 4.126 11 C -0.170 4.170 12 C 0.062 3.938 13 H 0.048 0.952 14 C -0.194 4.194 15 N -0.323 5.323 16 C -0.386 4.386 17 H 0.112 0.888 18 C -0.174 4.174 19 N -0.550 5.550 20 Si 0.707 3.293 21 H -0.217 1.217 22 H -0.231 1.231 23 H -0.196 1.196 24 C 0.015 3.985 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.239 0.761 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.497 -12.483 4.483 13.273 hybrid contribution -0.797 -0.501 -0.715 1.182 sum -0.300 -12.984 3.768 13.523 Atomic orbital electron populations 1.21770 0.95576 1.01599 1.02055 1.21421 0.96052 0.96000 1.02333 1.21862 0.94387 0.97916 1.03161 1.21312 0.93577 0.83549 1.02022 1.46143 1.07722 1.08720 1.76214 1.20986 0.81701 0.91963 0.74476 1.90624 1.55431 1.46799 1.49980 1.22000 0.98257 0.91363 1.03346 0.88300 1.21192 0.92645 0.96759 1.02027 1.22086 0.99225 0.95426 1.00257 1.20524 0.84273 0.94681 0.94281 0.95158 1.21816 0.98358 0.96287 1.02968 1.44418 1.00895 1.01701 1.85276 1.18976 0.99366 0.89835 1.30388 0.88833 1.25326 0.96741 0.96733 0.98618 1.69815 1.05620 1.35687 1.43906 0.87063 0.77777 0.82309 0.82169 1.21688 1.23074 1.19593 1.21279 0.97720 0.86661 0.92840 0.92598 0.92722 0.92635 0.91747 0.91760 0.91121 0.91105 0.91825 0.91745 0.76123 0.92329 0.92029 0.91847 0.92343 0.94027 0.91833 0.92366 0.92767 0.95393 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.06 5.93 -26.74 -0.16 -1.22 16 3 C -0.14 -1.41 5.33 -26.74 -0.14 -1.56 16 4 C 0.12 1.54 5.67 -4.05 -0.02 1.52 16 5 N -0.74 -11.28 5.46 -60.29 -0.33 -11.61 16 6 C 0.52 9.36 7.16 -10.98 -0.08 9.28 16 7 O -0.55 -11.14 15.98 5.56 0.09 -11.05 16 8 C -0.13 -2.31 2.68 -91.65 -0.25 -2.55 16 9 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 10 C -0.09 -1.53 4.46 -26.69 -0.12 -1.65 16 11 C -0.13 -2.19 5.37 -26.61 -0.14 -2.33 16 12 C 0.17 3.28 3.50 -67.61 -0.24 3.05 16 13 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 14 C -0.14 -2.49 7.95 37.15 0.30 -2.19 16 15 N -0.60 -13.73 2.75 -164.78 -0.45 -14.18 16 16 C -0.26 -6.81 9.05 -15.06 -0.14 -6.95 16 17 H 0.09 2.61 6.39 -52.49 -0.34 2.28 16 18 C 0.02 0.68 5.24 -17.43 -0.09 0.59 16 19 N -0.91 -26.71 13.97 55.49 0.78 -25.93 16 20 Si 0.88 21.65 24.34 -169.99 -4.14 17.51 16 21 H -0.29 -6.67 6.63 56.52 0.37 -6.30 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 H -0.27 -6.77 6.63 56.52 0.37 -6.40 16 24 C 0.14 3.02 3.33 -3.71 -0.01 3.00 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.40 5.89 8.01 -40.82 -0.33 5.56 16 35 H 0.06 0.96 8.07 -51.93 -0.42 0.54 16 36 H 0.06 1.11 8.13 -51.93 -0.42 0.69 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.25 7.66 -51.92 -0.40 0.85 16 41 H 0.06 1.10 7.40 -51.93 -0.38 0.71 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.03 0.63 7.03 -51.93 -0.37 0.26 16 44 H 0.07 1.64 4.22 -51.93 -0.22 1.43 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -30.45 337.65 -7.67 -38.12 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.98 Total: 3.93 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -0.72 Total: -1.87 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.01 Total: -51.73 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.45 -7.67 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058363849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.622 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds