Wall clock time and date at job start Mon Mar 30 2020 01:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47110 * 2 1 4 4 C 1.52996 * 109.47610 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47605 * 179.97438 * 4 3 2 6 6 C 1.34780 * 120.00218 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99897 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99893 * 179.72261 * 6 5 4 9 9 H 1.09010 * 109.49458 * 60.21518 * 8 6 5 10 10 C 1.53040 * 109.49630 * 180.27504 * 8 6 5 11 11 C 1.53045 * 109.53764 * 181.31854 * 10 8 6 12 12 C 1.53193 * 109.31244 * 298.63762 * 11 10 8 13 13 H 1.08999 * 109.58577 * 294.70399 * 12 11 10 14 14 C 1.52991 * 109.58326 * 174.42239 * 12 11 10 15 15 N 1.46921 * 108.77636 * 54.63427 * 12 11 10 16 16 C 1.36937 * 120.63171 * 126.40882 * 15 12 11 17 17 H 1.08000 * 119.99985 * 330.87386 * 16 15 12 18 18 C 1.38816 * 119.99875 * 150.86733 * 16 15 12 19 19 N 1.31622 * 119.99903 * 160.74928 * 18 16 15 20 20 Si 1.86799 * 120.00064 * 340.74335 * 18 16 15 21 21 H 1.48502 * 109.46880 * 92.28810 * 20 18 16 22 22 H 1.48496 * 109.47241 * 212.28807 * 20 18 16 23 23 H 1.48504 * 109.47166 * 332.29083 * 20 18 16 24 24 C 1.46927 * 118.73936 * 306.39068 * 15 12 11 25 25 H 1.09001 * 109.47044 * 60.00803 * 1 2 3 26 26 H 1.09007 * 109.47096 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47321 * 300.00029 * 1 2 3 28 28 H 1.08997 * 109.47321 * 239.99971 * 2 1 3 29 29 H 1.09001 * 109.47044 * 119.99197 * 2 1 3 30 30 H 1.09002 * 109.47759 * 59.99257 * 3 2 1 31 31 H 1.09004 * 109.47123 * 299.99933 * 3 2 1 32 32 H 1.09005 * 109.47215 * 59.99724 * 4 3 2 33 33 H 1.09004 * 109.47318 * 299.99792 * 4 3 2 34 34 H 0.97003 * 120.00065 * 359.97438 * 5 4 3 35 35 H 1.08997 * 109.46253 * 301.34390 * 10 8 6 36 36 H 1.08997 * 109.45578 * 61.31315 * 10 8 6 37 37 H 1.08996 * 109.49414 * 58.59177 * 11 10 8 38 38 H 1.09003 * 109.49603 * 178.65351 * 11 10 8 39 39 H 1.09001 * 109.47628 * 60.00086 * 14 12 11 40 40 H 1.09008 * 109.47115 * 180.02562 * 14 12 11 41 41 H 1.08998 * 109.47798 * 299.99745 * 14 12 11 42 42 H 0.97001 * 120.00073 * 179.97438 * 19 18 16 43 43 H 1.08998 * 109.59177 * 293.82245 * 24 15 12 44 44 H 1.09005 * 109.58536 * 173.39333 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0582 2.8238 0.0000 6 6 5.3833 3.0701 0.0010 7 8 6.1715 2.1483 0.0018 8 6 5.8856 4.4909 -0.0060 9 1 5.5240 5.0089 0.8824 10 6 7.4160 4.4917 -0.0103 11 6 7.9272 5.9340 0.0158 12 6 7.4398 6.6671 -1.2379 13 1 7.8943 6.2204 -2.1222 14 6 7.8286 8.1442 -1.1519 15 7 5.9777 6.5464 -1.3178 16 6 5.1916 7.6605 -1.4443 17 1 5.5213 8.6035 -1.0338 18 6 3.9709 7.5778 -2.1001 19 7 3.0560 8.5041 -1.9069 20 14 3.6268 6.1521 -3.2569 21 1 2.9619 5.0560 -2.5074 22 1 2.7393 6.6095 -4.3560 23 1 4.9058 5.6572 -3.8267 24 6 5.3751 5.2077 -1.2599 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 3.4279 3.5611 -0.0011 35 1 7.7819 3.9607 0.8685 36 1 7.7767 3.9950 -0.9109 37 1 7.5465 6.4388 0.9037 38 1 9.0170 5.9333 0.0369 39 1 8.9128 8.2310 -1.0800 40 1 7.4806 8.6641 -2.0446 41 1 7.3692 8.5903 -0.2699 42 1 2.2031 8.4466 -2.3655 43 1 5.6592 4.6403 -2.1462 44 1 4.2897 5.2972 -1.2133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058363849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:36 Heat of formation + Delta-G solvation = -62.130178 kcal Electronic energy + Delta-G solvation = -21587.139150 eV Core-core repulsion = 18538.148487 eV Total energy + Delta-G solvation = -3048.990663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.24909 -39.24144 -37.19714 -34.94814 -34.79329 -33.77170 -32.57375 -30.09727 -28.23319 -26.88243 -24.82074 -24.39189 -22.81388 -22.28744 -21.14203 -20.77571 -18.57532 -18.17470 -17.31624 -16.94777 -16.74281 -16.40201 -15.84852 -15.26687 -15.23335 -15.02603 -14.72161 -14.50253 -14.39166 -14.01200 -13.69196 -13.41246 -13.29649 -13.06878 -12.66241 -12.53897 -12.52372 -12.44563 -12.13820 -12.03581 -11.93130 -11.74196 -11.69417 -11.55638 -11.42797 -11.28229 -10.76973 -10.64905 -10.16207 -8.90095 -8.12510 -5.45984 1.24339 1.41322 1.47568 1.52831 2.17027 2.41298 3.05016 3.27047 3.75298 3.77683 3.84509 3.94572 3.99873 4.13143 4.16482 4.32817 4.40021 4.40798 4.53579 4.57425 4.63914 4.65922 4.82853 4.85854 4.88519 4.88879 4.97661 4.99739 5.02025 5.13181 5.16196 5.20269 5.28048 5.31153 5.39801 5.43733 5.50216 5.62398 5.92460 6.22624 6.40936 6.92767 7.13001 7.64412 8.06221 9.06657 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.006245 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.692155 B = 4482.380913 C = 5802.644193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.729 5.729 6 C 0.522 3.478 7 O -0.574 6.574 8 C -0.119 4.119 9 H 0.105 0.895 10 C -0.085 4.085 11 C -0.119 4.119 12 C 0.157 3.843 13 H 0.032 0.968 14 C -0.130 4.130 15 N -0.612 5.612 16 C -0.238 4.238 17 H 0.072 0.928 18 C -0.026 4.026 19 N -0.952 5.952 20 Si 0.927 3.073 21 H -0.265 1.265 22 H -0.314 1.314 23 H -0.276 1.276 24 C 0.143 3.857 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.408 0.592 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.046 0.954 42 H 0.261 0.739 43 H 0.020 0.980 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 -13.635 5.287 14.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.166 4.166 4 C -0.005 4.005 5 N -0.380 5.380 6 C 0.309 3.691 7 O -0.454 6.454 8 C -0.142 4.142 9 H 0.123 0.877 10 C -0.123 4.123 11 C -0.158 4.158 12 C 0.052 3.948 13 H 0.050 0.950 14 C -0.187 4.187 15 N -0.336 5.336 16 C -0.368 4.368 17 H 0.089 0.911 18 C -0.221 4.221 19 N -0.598 5.598 20 Si 0.757 3.243 21 H -0.191 1.191 22 H -0.243 1.243 23 H -0.201 1.201 24 C 0.017 3.983 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.243 0.757 35 H 0.090 0.910 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.205 -14.233 5.243 15.215 hybrid contribution -0.941 0.050 -0.918 1.316 sum 0.264 -14.183 4.324 14.830 Atomic orbital electron populations 1.21766 0.94902 1.02304 1.01982 1.21417 0.96583 0.94817 1.02779 1.21830 0.92438 0.99168 1.03203 1.21470 0.95200 0.82033 1.01845 1.46191 1.07021 1.10033 1.74802 1.20859 0.82370 0.91393 0.74474 1.90615 1.56169 1.47220 1.51404 1.21868 0.99193 0.91440 1.01725 0.87749 1.21184 0.91688 0.97171 1.02267 1.21980 1.01083 0.94396 0.98343 1.20817 0.82194 0.95937 0.95852 0.95049 1.21741 1.00683 0.95071 1.01207 1.44589 1.02321 1.01304 1.85427 1.18937 0.99124 0.90273 1.28437 0.91087 1.25802 0.97016 0.99011 1.00300 1.69922 1.06250 1.38038 1.45633 0.86219 0.77208 0.80647 0.80227 1.19142 1.24285 1.20112 1.21177 0.97100 0.86061 0.94002 0.93000 0.91677 0.92400 0.91688 0.90989 0.90412 0.91712 0.92513 0.91358 0.75655 0.90955 0.92792 0.91911 0.89166 0.90238 0.94174 0.93538 0.93026 0.96261 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.91 71.98 0.71 -1.44 16 2 C -0.12 -1.84 5.93 30.59 0.18 -1.66 16 3 C -0.13 -2.44 5.33 30.59 0.16 -2.28 16 4 C 0.12 2.84 5.67 86.38 0.49 3.33 16 5 N -0.73 -21.15 5.46 -463.06 -2.53 -23.68 16 6 C 0.52 17.85 7.16 87.66 0.63 18.48 16 7 O -0.57 -22.26 15.98 -3.03 -0.05 -22.31 16 8 C -0.12 -4.15 2.68 -11.46 -0.03 -4.18 16 9 H 0.10 3.52 8.14 -2.38 -0.02 3.50 16 10 C -0.09 -2.73 4.46 30.62 0.14 -2.59 16 11 C -0.12 -3.64 5.37 30.67 0.16 -3.47 16 12 C 0.16 5.85 3.50 44.97 0.16 6.00 16 13 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 14 C -0.13 -4.54 7.95 71.98 0.57 -3.96 16 15 N -0.61 -27.60 2.75 -675.25 -1.86 -29.45 16 16 C -0.24 -12.71 9.05 84.03 0.76 -11.95 16 17 H 0.07 4.07 6.39 -2.91 -0.02 4.05 16 18 C -0.03 -1.47 5.24 84.86 0.44 -1.03 16 19 N -0.95 -57.25 13.97 21.65 0.30 -56.94 16 20 Si 0.93 44.94 24.34 68.60 1.67 46.61 16 21 H -0.27 -11.64 6.63 99.48 0.66 -10.98 16 22 H -0.31 -15.70 7.11 99.48 0.71 -14.99 16 23 H -0.28 -13.44 6.63 99.48 0.66 -12.78 16 24 C 0.14 5.91 3.33 86.36 0.29 6.20 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 11.22 8.01 -92.71 -0.74 10.48 16 35 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 36 H 0.05 1.82 8.13 -2.39 -0.02 1.80 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.14 16 40 H 0.04 1.56 7.66 -2.38 -0.02 1.54 16 41 H 0.05 1.71 7.40 -2.39 -0.02 1.70 16 42 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.02 0.84 7.03 -2.39 -0.02 0.83 16 44 H 0.06 2.71 4.22 -2.38 -0.01 2.70 16 Total: -1.00 -65.00 337.65 2.33 -62.67 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.12 Total: 21.64 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 4.67 Total: 1.45 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.08 Total: -110.07 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.67 Total: 46.61 kcal Total: -65.00 2.33 -62.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058363849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.544 kcal (2) G-P(sol) polarization free energy of solvation -65.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds