Wall clock time and date at job start Mon Mar 30 2020 01:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47310 * 2 1 4 4 C 1.52996 * 109.47529 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47349 * 180.02562 * 4 3 2 6 6 C 1.34783 * 119.99805 * 180.02562 * 5 4 3 7 7 O 1.21275 * 120.00066 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99810 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.49475 * 59.93126 * 8 6 5 10 10 C 1.53030 * 109.49636 * 179.97438 * 8 6 5 11 11 C 1.53047 * 109.54139 * 58.58602 * 10 8 6 12 12 C 1.53184 * 109.31065 * 61.36302 * 11 10 8 13 13 H 1.08996 * 109.59317 * 65.30088 * 12 11 10 14 14 C 1.53001 * 109.58524 * 185.57970 * 12 11 10 15 15 N 1.46933 * 108.77879 * 305.36610 * 12 11 10 16 16 C 1.36940 * 120.63080 * 233.63440 * 15 12 11 17 17 H 1.08001 * 119.99822 * 29.01486 * 16 15 12 18 18 C 1.38810 * 119.99606 * 209.01451 * 16 15 12 19 19 N 1.31617 * 120.00351 * 15.01075 * 18 16 15 20 20 Si 1.86804 * 119.99922 * 195.00456 * 18 16 15 21 21 H 1.48503 * 109.46822 * 60.00038 * 20 18 16 22 22 H 1.48494 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46992 * 300.00305 * 20 18 16 24 24 C 1.46919 * 118.73384 * 53.61068 * 15 12 11 25 25 H 1.08998 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46809 * 299.99656 * 1 2 3 27 27 H 1.08993 * 109.47202 * 60.00181 * 1 2 3 28 28 H 1.09000 * 109.47088 * 239.99876 * 2 1 3 29 29 H 1.09000 * 109.47457 * 120.00427 * 2 1 3 30 30 H 1.09000 * 109.47147 * 59.99911 * 3 2 1 31 31 H 1.09002 * 109.46881 * 300.00159 * 3 2 1 32 32 H 1.09000 * 109.47131 * 300.00361 * 4 3 2 33 33 H 1.09000 * 109.47195 * 59.99676 * 4 3 2 34 34 H 0.96997 * 120.00325 * 359.97438 * 5 4 3 35 35 H 1.09004 * 109.46167 * 178.60553 * 10 8 6 36 36 H 1.08998 * 109.46245 * 298.56553 * 10 8 6 37 37 H 1.08998 * 109.50037 * 181.31824 * 11 10 8 38 38 H 1.09004 * 109.49337 * 301.41351 * 11 10 8 39 39 H 1.09008 * 109.47361 * 60.00144 * 14 12 11 40 40 H 1.09006 * 109.47265 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47064 * 300.00086 * 14 12 11 42 42 H 0.96994 * 120.00824 * 179.97438 * 19 18 16 43 43 H 1.09009 * 109.58616 * 186.60542 * 24 15 12 44 44 H 1.09001 * 109.58891 * 66.18031 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3835 3.0699 -0.0010 7 8 6.1715 2.1481 -0.0028 8 6 5.8858 4.4908 0.0003 9 1 5.5225 5.0043 0.8904 10 6 7.4161 4.4914 -0.0005 11 6 7.9277 3.7412 -1.2325 12 6 7.4433 4.4555 -2.4980 13 1 7.8996 5.4436 -2.5573 14 6 7.8324 3.6362 -3.7302 15 7 5.9813 4.5879 -2.4361 16 6 5.1957 4.1363 -3.4629 17 1 5.5257 3.3067 -4.0706 18 6 3.9754 4.7447 -3.7224 19 7 3.7003 5.9191 -3.1957 20 14 2.7235 3.8968 -4.8194 21 1 2.3524 2.5869 -4.2262 22 1 1.5125 4.7479 -4.9382 23 1 3.3109 3.6816 -6.1662 24 6 5.3782 5.2136 -1.2515 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 0.8891 33 1 3.9330 0.9288 -0.8908 34 1 3.4280 3.5610 0.0003 35 1 7.7788 5.5191 -0.0246 36 1 7.7800 3.9992 0.9014 37 1 9.0175 3.7218 -1.2201 38 1 7.5451 2.7205 -1.2217 39 1 7.3711 2.6503 -3.6715 40 1 7.4872 4.1463 -4.6296 41 1 8.9164 3.5285 -3.7674 42 1 2.8477 6.3445 -3.3774 43 1 4.2927 5.1301 -1.3067 44 1 5.6642 6.2645 -1.2077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058363855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:41 Heat of formation + Delta-G solvation = -40.683956 kcal Electronic energy + Delta-G solvation = -22312.754125 eV Core-core repulsion = 19264.693440 eV Total energy + Delta-G solvation = -3048.060685 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.57744 -37.05798 -35.76438 -33.43197 -32.88364 -32.00777 -29.85462 -28.71172 -26.40480 -25.04918 -23.49955 -22.12010 -21.36556 -21.15282 -19.70867 -18.74125 -16.66586 -15.78746 -15.64136 -15.42367 -15.05017 -14.34376 -13.85089 -13.73080 -13.66301 -13.34400 -13.19154 -12.87588 -12.59339 -12.27933 -12.17800 -11.61662 -11.39886 -11.18017 -11.09231 -11.03942 -11.00116 -10.90742 -10.74182 -10.66116 -10.56732 -10.30501 -10.06498 -9.76656 -9.51358 -9.25459 -8.80123 -8.46874 -8.34459 -6.60162 -5.77778 -3.18919 3.35962 3.41637 3.44142 3.46619 3.87200 4.49625 4.93638 4.97393 5.08874 5.33811 5.42484 5.44498 5.46970 5.58555 5.70352 5.72428 5.79211 5.81866 5.93956 5.97892 6.02963 6.13035 6.18831 6.27456 6.35820 6.39215 6.39691 6.47506 6.54037 6.68855 6.71044 6.86212 7.01385 7.06371 7.15225 7.18713 7.44455 7.57000 7.84098 8.18544 8.46897 9.01207 9.23268 9.87029 10.45056 11.31222 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.008438 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.041198 B = 3317.378473 C = 4619.853641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.133 4.133 4 C 0.125 3.875 5 N -0.728 5.728 6 C 0.544 3.456 7 O -0.553 6.553 8 C -0.140 4.140 9 H 0.079 0.921 10 C -0.086 4.086 11 C -0.144 4.144 12 C 0.167 3.833 13 H 0.021 0.979 14 C -0.135 4.135 15 N -0.584 5.584 16 C -0.236 4.236 17 H 0.067 0.933 18 C 0.002 3.998 19 N -0.908 5.908 20 Si 0.895 3.105 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.181 3.819 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.252 0.748 43 H 0.093 0.907 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 -5.565 7.692 9.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.171 4.171 4 C 0.001 3.999 5 N -0.380 5.380 6 C 0.333 3.667 7 O -0.431 6.431 8 C -0.164 4.164 9 H 0.098 0.902 10 C -0.124 4.124 11 C -0.183 4.183 12 C 0.061 3.939 13 H 0.039 0.961 14 C -0.192 4.192 15 N -0.307 5.307 16 C -0.366 4.366 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.554 5.554 20 Si 0.725 3.275 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.055 3.945 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.111 0.889 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.615 -6.139 7.635 9.929 hybrid contribution -1.095 0.073 -0.627 1.264 sum -2.710 -6.066 7.009 9.657 Atomic orbital electron populations 1.21763 0.95818 1.01410 1.01896 1.21422 0.95824 0.96367 1.02241 1.21825 0.94884 0.97547 1.02811 1.21181 0.93082 0.84072 1.01555 1.45887 1.07638 1.08047 1.76415 1.20462 0.81410 0.91460 0.73371 1.90502 1.55126 1.47041 1.50432 1.22139 0.97809 0.93698 1.02720 0.90246 1.21137 0.93343 0.99532 0.98415 1.22328 0.98197 1.02551 0.95218 1.20490 0.85673 0.95160 0.92601 0.96124 1.21788 0.98124 1.00474 0.98843 1.44038 0.99438 1.70313 1.16950 1.19123 0.99355 1.09622 1.08507 0.91561 1.24989 1.00030 0.95313 0.99255 1.69975 1.23364 1.13872 1.48175 0.86475 0.81250 0.78868 0.80885 1.21118 1.21736 1.21013 1.20787 0.99444 0.92764 0.81549 0.92876 0.92819 0.92616 0.91708 0.91955 0.91615 0.91013 0.92472 0.91882 0.76667 0.92561 0.93267 0.93909 0.89027 0.92936 0.92357 0.94433 0.93745 0.88907 0.95367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.14 16 2 C -0.12 -1.35 5.93 -26.73 -0.16 -1.50 16 3 C -0.13 -1.71 5.33 -26.74 -0.14 -1.86 16 4 C 0.13 1.98 5.67 -4.05 -0.02 1.95 16 5 N -0.73 -12.88 5.42 -60.30 -0.33 -13.21 16 6 C 0.54 10.97 6.58 -10.98 -0.07 10.90 16 7 O -0.55 -12.47 13.57 5.56 0.08 -12.40 16 8 C -0.14 -2.69 3.02 -91.65 -0.28 -2.97 16 9 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 10 C -0.09 -1.60 5.07 -26.69 -0.14 -1.74 16 11 C -0.14 -2.89 5.05 -26.61 -0.13 -3.02 16 12 C 0.17 3.65 3.50 -67.60 -0.24 3.42 16 13 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 14 C -0.13 -2.75 7.94 37.16 0.30 -2.46 16 15 N -0.58 -14.27 2.70 -164.77 -0.44 -14.72 16 16 C -0.24 -6.27 8.61 -15.06 -0.13 -6.40 16 17 H 0.07 1.79 6.20 -52.49 -0.33 1.46 16 18 C 0.00 0.04 4.96 -17.43 -0.09 -0.04 16 19 N -0.91 -24.99 11.14 55.49 0.62 -24.37 16 20 Si 0.89 21.29 29.58 -169.99 -5.03 16.26 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 C 0.18 4.09 4.63 -3.71 -0.02 4.08 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.40 6.59 7.85 -40.82 -0.32 6.27 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.87 8.13 -51.93 -0.42 0.44 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 2.07 5.37 -51.93 -0.28 1.80 16 39 H 0.05 1.12 7.40 -51.92 -0.38 0.73 16 40 H 0.06 1.24 7.66 -51.93 -0.40 0.85 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.09 2.23 5.36 -51.92 -0.28 1.95 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 338.35 15.07 5.10 5.10 Total: -1.00 -29.58 338.35 -8.64 -38.22 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.88 Total: 5.89 kcal Atomic # 6 Polarization: -0.03 SS G_CDS: -0.75 Total: -0.78 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -0.15 Total: -52.30 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.08 Total: -12.40 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.58 -8.64 -38.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058363855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.469 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds