Wall clock time and date at job start Mon Mar 30 2020 01:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47310 * 2 1 4 4 C 1.52996 * 109.47529 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47349 * 180.02562 * 4 3 2 6 6 C 1.34783 * 119.99805 * 180.02562 * 5 4 3 7 7 O 1.21275 * 120.00066 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99810 * 180.02562 * 6 5 4 9 9 H 1.09000 * 109.49475 * 59.93126 * 8 6 5 10 10 C 1.53030 * 109.49636 * 179.97438 * 8 6 5 11 11 C 1.53047 * 109.54139 * 58.58602 * 10 8 6 12 12 C 1.53184 * 109.31065 * 61.36302 * 11 10 8 13 13 H 1.08996 * 109.59317 * 65.30088 * 12 11 10 14 14 C 1.53001 * 109.58524 * 185.57970 * 12 11 10 15 15 N 1.46933 * 108.77879 * 305.36610 * 12 11 10 16 16 C 1.36940 * 120.63080 * 233.63440 * 15 12 11 17 17 H 1.08001 * 119.99822 * 29.01486 * 16 15 12 18 18 C 1.38810 * 119.99606 * 209.01451 * 16 15 12 19 19 N 1.31617 * 120.00351 * 15.01075 * 18 16 15 20 20 Si 1.86804 * 119.99922 * 195.00456 * 18 16 15 21 21 H 1.48503 * 109.46822 * 60.00038 * 20 18 16 22 22 H 1.48494 * 109.46966 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46992 * 300.00305 * 20 18 16 24 24 C 1.46919 * 118.73384 * 53.61068 * 15 12 11 25 25 H 1.08998 * 109.47287 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46809 * 299.99656 * 1 2 3 27 27 H 1.08993 * 109.47202 * 60.00181 * 1 2 3 28 28 H 1.09000 * 109.47088 * 239.99876 * 2 1 3 29 29 H 1.09000 * 109.47457 * 120.00427 * 2 1 3 30 30 H 1.09000 * 109.47147 * 59.99911 * 3 2 1 31 31 H 1.09002 * 109.46881 * 300.00159 * 3 2 1 32 32 H 1.09000 * 109.47131 * 300.00361 * 4 3 2 33 33 H 1.09000 * 109.47195 * 59.99676 * 4 3 2 34 34 H 0.96997 * 120.00325 * 359.97438 * 5 4 3 35 35 H 1.09004 * 109.46167 * 178.60553 * 10 8 6 36 36 H 1.08998 * 109.46245 * 298.56553 * 10 8 6 37 37 H 1.08998 * 109.50037 * 181.31824 * 11 10 8 38 38 H 1.09004 * 109.49337 * 301.41351 * 11 10 8 39 39 H 1.09008 * 109.47361 * 60.00144 * 14 12 11 40 40 H 1.09006 * 109.47265 * 180.02562 * 14 12 11 41 41 H 1.09002 * 109.47064 * 300.00086 * 14 12 11 42 42 H 0.96994 * 120.00824 * 179.97438 * 19 18 16 43 43 H 1.09009 * 109.58616 * 186.60542 * 24 15 12 44 44 H 1.09001 * 109.58891 * 66.18031 * 24 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 5.3835 3.0699 -0.0010 7 8 6.1715 2.1481 -0.0028 8 6 5.8858 4.4908 0.0003 9 1 5.5225 5.0043 0.8904 10 6 7.4161 4.4914 -0.0005 11 6 7.9277 3.7412 -1.2325 12 6 7.4433 4.4555 -2.4980 13 1 7.8996 5.4436 -2.5573 14 6 7.8324 3.6362 -3.7302 15 7 5.9813 4.5879 -2.4361 16 6 5.1957 4.1363 -3.4629 17 1 5.5257 3.3067 -4.0706 18 6 3.9754 4.7447 -3.7224 19 7 3.7003 5.9191 -3.1957 20 14 2.7235 3.8968 -4.8194 21 1 2.3524 2.5869 -4.2262 22 1 1.5125 4.7479 -4.9382 23 1 3.3109 3.6816 -6.1662 24 6 5.3782 5.2136 -1.2515 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 0.8891 33 1 3.9330 0.9288 -0.8908 34 1 3.4280 3.5610 0.0003 35 1 7.7788 5.5191 -0.0246 36 1 7.7800 3.9992 0.9014 37 1 9.0175 3.7218 -1.2201 38 1 7.5451 2.7205 -1.2217 39 1 7.3711 2.6503 -3.6715 40 1 7.4872 4.1463 -4.6296 41 1 8.9164 3.5285 -3.7674 42 1 2.8477 6.3445 -3.3774 43 1 4.2927 5.1301 -1.3067 44 1 5.6642 6.2645 -1.2077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058363855.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:41 Heat of formation + Delta-G solvation = -57.721117 kcal Electronic energy + Delta-G solvation = -22313.492911 eV Core-core repulsion = 19264.693440 eV Total energy + Delta-G solvation = -3048.799472 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16843 -38.68555 -37.04373 -34.89695 -34.58800 -33.64053 -31.68756 -29.92946 -28.00630 -26.94711 -24.73559 -23.90113 -22.82987 -22.23255 -21.40809 -20.31248 -18.49875 -17.42167 -17.09453 -16.82546 -16.62553 -15.99398 -15.50370 -15.40862 -15.05428 -14.76846 -14.46550 -14.40671 -14.11517 -13.90020 -13.33828 -13.22201 -12.96977 -12.79536 -12.63460 -12.55750 -12.41625 -12.41288 -12.14959 -12.08052 -12.01051 -11.95889 -11.55434 -11.44704 -11.19207 -10.97983 -10.58587 -10.28075 -9.86313 -8.55789 -7.81299 -5.24038 1.44452 1.46494 1.52535 1.88460 2.46970 2.53096 3.32951 3.65899 3.86953 3.93148 3.99170 4.10131 4.19877 4.23184 4.33394 4.43928 4.55925 4.61776 4.62895 4.69178 4.74175 4.89204 4.90382 4.93050 4.96082 5.05081 5.09730 5.15419 5.21414 5.24539 5.29019 5.33767 5.42409 5.43967 5.49337 5.60117 5.67122 5.74537 5.89090 6.46226 6.71203 7.22420 7.47645 7.92648 8.45944 9.25101 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013609 B = 0.008438 C = 0.006059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.041198 B = 3317.378473 C = 4619.853641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.123 4.123 4 C 0.126 3.874 5 N -0.724 5.724 6 C 0.538 3.462 7 O -0.580 6.580 8 C -0.135 4.135 9 H 0.111 0.889 10 C -0.085 4.085 11 C -0.136 4.136 12 C 0.158 3.842 13 H 0.019 0.981 14 C -0.126 4.126 15 N -0.599 5.599 16 C -0.241 4.241 17 H 0.056 0.944 18 C -0.037 4.037 19 N -0.928 5.928 20 Si 0.946 3.054 21 H -0.282 1.282 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.188 3.812 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.405 0.595 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.036 0.964 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.250 0.750 43 H 0.075 0.925 44 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 -5.956 8.828 10.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.161 4.161 4 C 0.002 3.998 5 N -0.375 5.375 6 C 0.326 3.674 7 O -0.460 6.460 8 C -0.158 4.158 9 H 0.129 0.871 10 C -0.123 4.123 11 C -0.174 4.174 12 C 0.052 3.948 13 H 0.037 0.963 14 C -0.183 4.183 15 N -0.322 5.322 16 C -0.372 4.372 17 H 0.073 0.927 18 C -0.232 4.232 19 N -0.575 5.575 20 Si 0.775 3.225 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.212 1.212 24 C 0.062 3.938 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.240 0.760 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -1.753 -6.532 8.780 11.083 hybrid contribution -1.008 0.189 -0.992 1.427 sum -2.761 -6.343 7.788 10.417 Atomic orbital electron populations 1.21748 0.94601 1.02338 1.01987 1.21430 0.96841 0.95003 1.02468 1.21772 0.92548 0.98939 1.02852 1.21264 0.95035 0.82864 1.00612 1.45940 1.07179 1.09112 1.75227 1.20669 0.81950 0.91555 0.73190 1.90492 1.55897 1.47795 1.51855 1.22073 0.98512 0.93046 1.02119 0.87080 1.21161 0.92645 1.00301 0.98216 1.22186 0.99531 1.00868 0.94863 1.20688 0.84383 0.95460 0.94237 0.96320 1.21696 1.00071 0.99006 0.97575 1.44264 1.00526 1.70303 1.17151 1.19214 0.99889 1.09187 1.08864 0.92666 1.25480 1.01242 0.95855 1.00648 1.70086 1.23454 1.14702 1.49260 0.85674 0.79390 0.78017 0.79370 1.20886 1.21666 1.21213 1.20615 0.98419 0.92236 0.82540 0.91581 0.91812 0.93446 0.92650 0.90631 0.89712 0.92720 0.91586 0.94567 0.76012 0.91119 0.91845 0.91542 0.91522 0.94498 0.93966 0.91174 0.94093 0.90667 0.96844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.96 16 2 C -0.12 -2.49 5.93 30.59 0.18 -2.31 16 3 C -0.12 -3.04 5.33 30.59 0.16 -2.88 16 4 C 0.13 3.92 5.67 86.38 0.49 4.41 16 5 N -0.72 -25.20 5.42 -463.07 -2.51 -27.71 16 6 C 0.54 21.25 6.58 87.66 0.58 21.83 16 7 O -0.58 -25.90 13.57 -3.01 -0.04 -25.94 16 8 C -0.13 -4.97 3.02 -11.46 -0.03 -5.00 16 9 H 0.11 3.37 8.14 -2.39 -0.02 3.36 16 10 C -0.09 -2.98 5.07 30.62 0.16 -2.82 16 11 C -0.14 -5.23 5.05 30.67 0.15 -5.08 16 12 C 0.16 6.81 3.50 44.97 0.16 6.96 16 13 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 14 C -0.13 -5.09 7.94 71.98 0.57 -4.52 16 15 N -0.60 -29.31 2.70 -675.23 -1.82 -31.13 16 16 C -0.24 -12.94 8.61 84.03 0.72 -12.22 16 17 H 0.06 3.04 6.20 -2.91 -0.02 3.02 16 18 C -0.04 -1.97 4.96 84.86 0.42 -1.55 16 19 N -0.93 -51.41 11.14 21.65 0.24 -51.16 16 20 Si 0.95 44.10 29.58 68.60 2.03 46.13 16 21 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 C 0.19 8.45 4.63 86.37 0.40 8.85 16 25 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.40 13.10 7.85 -92.71 -0.73 12.37 16 35 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.06 2.06 8.13 -2.39 -0.02 2.04 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.07 2.97 5.37 -2.39 -0.01 2.95 16 39 H 0.04 1.57 7.40 -2.38 -0.02 1.55 16 40 H 0.04 1.80 7.66 -2.38 -0.02 1.78 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 43 H 0.08 3.63 5.36 -2.38 -0.01 3.62 16 44 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -62.89 338.35 2.81 -60.08 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: 0.23 Total: 26.01 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 4.67 Total: 3.71 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -4.09 Total: -110.00 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.04 Total: -25.94 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -62.89 2.81 -60.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058363855.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.363 kcal (2) G-P(sol) polarization free energy of solvation -62.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds