Wall clock time and date at job start Mon Mar 30 2020 00:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 C 1.52998 * 109.47134 * 185.32102 * 3 2 1 5 5 H 1.09004 * 109.45302 * 57.45095 * 4 3 2 6 6 C 1.53034 * 109.46342 * 297.47547 * 4 3 2 7 7 H 1.08994 * 109.53606 * 60.84307 * 6 4 3 8 8 C 1.53007 * 109.50257 * 300.74640 * 6 4 3 9 9 C 1.53120 * 109.27811 * 180.80503 * 6 4 3 10 10 C 1.53124 * 109.16176 * 57.65465 * 9 6 4 11 11 C 1.53036 * 109.27685 * 302.34834 * 10 9 6 12 12 N 1.46843 * 109.52638 * 59.17628 * 11 10 9 13 13 C 1.46901 * 111.00018 * 174.16134 * 12 11 10 14 14 C 1.50701 * 109.47091 * 63.87926 * 13 12 11 15 15 O 1.21294 * 120.00134 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99866 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99994 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99850 * 0.02562 * 17 16 14 19 19 C 1.38941 * 120.00238 * 180.27338 * 17 16 14 20 20 N 1.31414 * 120.00482 * 179.72778 * 19 17 16 21 21 Si 1.86808 * 119.99896 * 359.72421 * 19 17 16 22 22 H 1.48496 * 109.46868 * 90.00141 * 21 19 17 23 23 H 1.48497 * 109.46990 * 209.99928 * 21 19 17 24 24 H 1.48502 * 109.47048 * 330.00200 * 21 19 17 25 25 H 1.09003 * 109.46790 * 299.99646 * 1 2 3 26 26 H 1.08996 * 109.47663 * 59.99857 * 1 2 3 27 27 H 1.09004 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46790 * 240.00354 * 2 1 3 29 29 H 1.08996 * 109.47663 * 120.00143 * 2 1 3 30 30 H 1.08998 * 109.46866 * 65.31925 * 3 2 1 31 31 H 1.09003 * 109.47059 * 305.32594 * 3 2 1 32 32 H 1.09000 * 109.46724 * 300.19623 * 8 6 4 33 33 H 1.08995 * 109.47034 * 60.20029 * 8 6 4 34 34 H 1.08996 * 109.46633 * 180.19784 * 8 6 4 35 35 H 1.08999 * 109.52478 * 297.75323 * 9 6 4 36 36 H 1.09000 * 109.52139 * 177.55487 * 9 6 4 37 37 H 1.08993 * 109.50440 * 182.40060 * 10 9 6 38 38 H 1.09007 * 109.49875 * 62.28389 * 10 9 6 39 39 H 1.09003 * 109.46085 * 299.15862 * 11 10 9 40 40 H 1.08998 * 109.46117 * 179.19423 * 11 10 9 41 41 H 1.09002 * 109.47015 * 303.87591 * 13 12 11 42 42 H 1.08997 * 109.47136 * 183.87979 * 13 12 11 43 43 H 0.96995 * 119.99978 * 359.97438 * 16 14 13 44 44 H 0.96999 * 120.00435 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5641 1.4446 -0.1338 5 1 3.8492 0.9191 -1.0452 6 6 4.1831 0.7403 1.0757 7 1 3.8360 -0.2922 1.1132 8 6 3.7675 1.4658 2.3571 9 6 5.7087 0.7624 0.9475 10 6 6.1827 2.2142 0.8360 11 6 5.5057 2.8758 -0.3665 12 7 4.0479 2.8297 -0.1958 13 6 3.3690 3.5772 -1.2627 14 6 3.6414 2.9174 -2.5900 15 8 4.3334 1.9226 -2.6421 16 7 3.1168 3.4333 -3.7192 17 6 3.3650 2.8334 -4.9267 18 1 3.9805 1.9471 -4.9730 19 6 2.8290 3.3685 -6.0915 20 7 3.0713 2.7965 -7.2496 21 14 1.7637 4.9010 -6.0114 22 1 2.6201 6.1066 -6.1469 23 1 0.7713 4.8722 -7.1157 24 1 1.0532 4.9423 -4.7081 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.7565 1.9281 0.9338 31 1 1.6008 1.9832 -0.8385 32 1 4.1137 2.4986 2.3184 33 1 2.6815 1.4496 2.4479 34 1 4.2115 0.9658 3.2179 35 1 6.0073 0.2123 0.0551 36 1 6.1550 0.3002 1.8280 37 1 7.2641 2.2346 0.7016 38 1 5.9181 2.7542 1.7452 39 1 5.7818 2.3436 -1.2769 40 1 5.8301 3.9137 -0.4403 41 1 3.7419 4.6013 -1.2827 42 1 2.2955 3.5850 -1.0744 43 1 2.5638 4.2290 -3.6776 44 1 2.6973 3.1703 -8.0629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072775986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:23 Heat of formation + Delta-G solvation = -46.641558 kcal Electronic energy + Delta-G solvation = -22278.359951 eV Core-core repulsion = 19230.040926 eV Total energy + Delta-G solvation = -3048.319026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.05673 -37.81809 -34.76007 -34.28598 -33.33800 -31.71562 -31.11911 -27.91267 -26.95171 -25.71201 -24.31204 -22.58339 -21.76023 -20.39293 -19.41262 -18.66049 -17.80664 -15.92417 -15.69270 -15.44807 -15.04681 -14.87518 -14.14932 -14.02756 -13.75033 -13.44920 -13.07688 -12.94619 -12.84203 -12.55944 -12.30184 -12.05093 -11.77388 -11.71702 -11.53428 -11.28675 -11.03581 -10.91398 -10.78476 -10.62578 -10.58238 -10.34112 -10.18687 -10.02526 -9.80143 -9.67446 -9.44866 -9.22424 -8.19186 -7.37765 -6.34951 -3.85835 3.00648 3.04848 3.13183 3.68288 4.07282 4.30025 4.69041 4.96931 5.02813 5.15413 5.19445 5.25770 5.31241 5.41306 5.47276 5.68944 5.73512 5.78010 5.80014 5.86060 5.89054 5.92183 5.95799 6.03902 6.07279 6.10585 6.15555 6.23182 6.25032 6.34968 6.36706 6.45351 6.50794 6.57730 6.65947 6.72439 6.89397 7.41661 7.55207 7.56664 8.12284 8.55271 8.91532 9.39417 9.78886 10.78040 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.005917 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.446128 B = 4730.827988 C = 5417.775247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.071 3.929 5 H 0.087 0.913 6 C -0.081 4.081 7 H 0.067 0.933 8 C -0.139 4.139 9 C -0.115 4.115 10 C -0.112 4.112 11 C 0.040 3.960 12 N -0.506 5.506 13 C 0.034 3.966 14 C 0.418 3.582 15 O -0.574 6.574 16 N -0.586 5.586 17 C -0.306 4.306 18 H 0.118 0.882 19 C 0.042 3.958 20 N -0.880 5.880 21 Si 0.879 3.121 22 H -0.270 1.270 23 H -0.276 1.276 24 H -0.269 1.269 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 0.253 16.871 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.037 4.037 5 H 0.104 0.896 6 C -0.100 4.100 7 H 0.085 0.915 8 C -0.196 4.196 9 C -0.153 4.153 10 C -0.150 4.150 11 C -0.088 4.088 12 N -0.229 5.229 13 C -0.098 4.098 14 C 0.204 3.796 15 O -0.459 6.459 16 N -0.224 5.224 17 C -0.435 4.435 18 H 0.136 0.864 19 C -0.161 4.161 20 N -0.520 5.520 21 Si 0.705 3.295 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.194 1.194 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.232 -0.187 17.049 17.095 hybrid contribution -0.723 0.901 -1.074 1.577 sum -1.955 0.714 15.976 16.111 Atomic orbital electron populations 1.21759 0.96266 1.01149 1.01570 1.21515 0.95371 0.97229 1.01921 1.21744 0.95136 0.96530 1.01866 1.21935 0.93558 0.89371 0.98827 0.89557 1.21153 0.94920 0.98697 0.95226 0.91508 1.21811 1.00618 1.01478 0.95739 1.21588 0.95657 0.96908 1.01112 1.21560 0.98751 0.95918 0.98754 1.22244 0.87554 1.00270 0.98744 1.62400 1.05126 1.13840 1.41493 1.22175 1.00797 0.98213 0.88661 1.21095 0.85089 0.87528 0.85858 1.90439 1.41866 1.27356 1.86198 1.42419 1.45924 1.26747 1.07337 1.19436 1.30669 1.11930 0.81436 0.86416 1.25061 0.97872 0.98144 0.95027 1.69625 1.44366 1.40043 0.97947 0.86684 0.80915 0.83472 0.78435 1.19591 1.20152 1.19397 0.93110 0.92748 0.93144 0.91924 0.92168 0.91610 0.92094 0.91349 0.93052 0.94263 0.92082 0.92675 0.92355 0.91705 0.91139 0.92060 0.89554 0.88995 0.79684 0.91596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.15 0.37 -1.40 16 2 C -0.12 -1.62 5.49 -26.73 -0.15 -1.77 16 3 C -0.12 -1.66 4.08 -26.73 -0.11 -1.77 16 4 C 0.07 1.13 1.18 -67.72 -0.08 1.05 16 5 H 0.09 1.74 5.53 -51.93 -0.29 1.46 16 6 C -0.08 -1.09 2.43 -90.54 -0.22 -1.31 16 7 H 0.07 0.87 6.66 -51.93 -0.35 0.53 16 8 C -0.14 -1.65 8.38 37.16 0.31 -1.34 16 9 C -0.12 -1.54 5.51 -26.61 -0.15 -1.68 16 10 C -0.11 -1.50 5.74 -26.65 -0.15 -1.65 16 11 C 0.04 0.64 5.06 -3.84 -0.02 0.62 16 12 N -0.51 -8.03 3.97 -228.12 -0.91 -8.93 16 13 C 0.03 0.56 5.33 -4.97 -0.03 0.54 16 14 C 0.42 9.18 7.16 -10.98 -0.08 9.10 16 15 O -0.57 -14.43 11.19 5.55 0.06 -14.37 16 16 N -0.59 -13.76 5.09 -10.96 -0.06 -13.82 16 17 C -0.31 -8.55 10.16 -14.94 -0.15 -8.71 16 18 H 0.12 3.78 7.39 -52.48 -0.39 3.39 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 20 N -0.88 -25.63 13.96 55.50 0.77 -24.85 16 21 Si 0.88 19.33 27.73 -169.99 -4.71 14.62 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.40 6.52 56.52 0.37 -5.03 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.72 6.79 -51.93 -0.35 0.37 16 30 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 31 H 0.06 0.97 6.14 -51.93 -0.32 0.65 16 32 H 0.07 0.86 6.01 -51.93 -0.31 0.55 16 33 H 0.05 0.59 6.37 -51.93 -0.33 0.26 16 34 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.81 6.58 -51.92 -0.34 0.47 16 39 H 0.07 1.40 5.82 -51.93 -0.30 1.09 16 40 H 0.06 0.93 8.09 -51.93 -0.42 0.51 16 41 H 0.09 1.30 8.10 -51.93 -0.42 0.88 16 42 H 0.09 1.41 6.13 -51.93 -0.32 1.09 16 43 H 0.37 7.73 5.77 -40.82 -0.24 7.49 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 323.72 15.07 4.88 4.88 Total: -1.00 -29.86 323.72 -7.76 -37.62 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.25 Total: 12.13 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.55 Total: -7.28 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.19 Total: -47.61 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.06 Total: -14.37 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.62 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.86 -7.76 -37.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072775986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.019 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds