Wall clock time and date at job start Mon Mar 30 2020 00:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47230 * 2 1 4 4 C 1.52998 * 109.47134 * 185.32102 * 3 2 1 5 5 H 1.09004 * 109.45302 * 57.45095 * 4 3 2 6 6 C 1.53034 * 109.46342 * 297.47547 * 4 3 2 7 7 H 1.08994 * 109.53606 * 60.84307 * 6 4 3 8 8 C 1.53007 * 109.50257 * 300.74640 * 6 4 3 9 9 C 1.53120 * 109.27811 * 180.80503 * 6 4 3 10 10 C 1.53124 * 109.16176 * 57.65465 * 9 6 4 11 11 C 1.53036 * 109.27685 * 302.34834 * 10 9 6 12 12 N 1.46843 * 109.52638 * 59.17628 * 11 10 9 13 13 C 1.46901 * 111.00018 * 174.16134 * 12 11 10 14 14 C 1.50701 * 109.47091 * 63.87926 * 13 12 11 15 15 O 1.21294 * 120.00134 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99866 * 180.02562 * 14 13 12 17 17 C 1.37095 * 119.99994 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99850 * 0.02562 * 17 16 14 19 19 C 1.38941 * 120.00238 * 180.27338 * 17 16 14 20 20 N 1.31414 * 120.00482 * 179.72778 * 19 17 16 21 21 Si 1.86808 * 119.99896 * 359.72421 * 19 17 16 22 22 H 1.48496 * 109.46868 * 90.00141 * 21 19 17 23 23 H 1.48497 * 109.46990 * 209.99928 * 21 19 17 24 24 H 1.48502 * 109.47048 * 330.00200 * 21 19 17 25 25 H 1.09003 * 109.46790 * 299.99646 * 1 2 3 26 26 H 1.08996 * 109.47663 * 59.99857 * 1 2 3 27 27 H 1.09004 * 109.47307 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46790 * 240.00354 * 2 1 3 29 29 H 1.08996 * 109.47663 * 120.00143 * 2 1 3 30 30 H 1.08998 * 109.46866 * 65.31925 * 3 2 1 31 31 H 1.09003 * 109.47059 * 305.32594 * 3 2 1 32 32 H 1.09000 * 109.46724 * 300.19623 * 8 6 4 33 33 H 1.08995 * 109.47034 * 60.20029 * 8 6 4 34 34 H 1.08996 * 109.46633 * 180.19784 * 8 6 4 35 35 H 1.08999 * 109.52478 * 297.75323 * 9 6 4 36 36 H 1.09000 * 109.52139 * 177.55487 * 9 6 4 37 37 H 1.08993 * 109.50440 * 182.40060 * 10 9 6 38 38 H 1.09007 * 109.49875 * 62.28389 * 10 9 6 39 39 H 1.09003 * 109.46085 * 299.15862 * 11 10 9 40 40 H 1.08998 * 109.46117 * 179.19423 * 11 10 9 41 41 H 1.09002 * 109.47015 * 303.87591 * 13 12 11 42 42 H 1.08997 * 109.47136 * 183.87979 * 13 12 11 43 43 H 0.96995 * 119.99978 * 359.97438 * 16 14 13 44 44 H 0.96999 * 120.00435 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5641 1.4446 -0.1338 5 1 3.8492 0.9191 -1.0452 6 6 4.1831 0.7403 1.0757 7 1 3.8360 -0.2922 1.1132 8 6 3.7675 1.4658 2.3571 9 6 5.7087 0.7624 0.9475 10 6 6.1827 2.2142 0.8360 11 6 5.5057 2.8758 -0.3665 12 7 4.0479 2.8297 -0.1958 13 6 3.3690 3.5772 -1.2627 14 6 3.6414 2.9174 -2.5900 15 8 4.3334 1.9226 -2.6421 16 7 3.1168 3.4333 -3.7192 17 6 3.3650 2.8334 -4.9267 18 1 3.9805 1.9471 -4.9730 19 6 2.8290 3.3685 -6.0915 20 7 3.0713 2.7965 -7.2496 21 14 1.7637 4.9010 -6.0114 22 1 2.6201 6.1066 -6.1469 23 1 0.7713 4.8722 -7.1157 24 1 1.0532 4.9423 -4.7081 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 1.7565 1.9281 0.9338 31 1 1.6008 1.9832 -0.8385 32 1 4.1137 2.4986 2.3184 33 1 2.6815 1.4496 2.4479 34 1 4.2115 0.9658 3.2179 35 1 6.0073 0.2123 0.0551 36 1 6.1550 0.3002 1.8280 37 1 7.2641 2.2346 0.7016 38 1 5.9181 2.7542 1.7452 39 1 5.7818 2.3436 -1.2769 40 1 5.8301 3.9137 -0.4403 41 1 3.7419 4.6013 -1.2827 42 1 2.2955 3.5850 -1.0744 43 1 2.5638 4.2290 -3.6776 44 1 2.6973 3.1703 -8.0629 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072775986.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:22 Heat of formation + Delta-G solvation = -66.926940 kcal Electronic energy + Delta-G solvation = -22279.239592 eV Core-core repulsion = 19230.040926 eV Total energy + Delta-G solvation = -3049.198666 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.48274 -39.45028 -36.18094 -35.82475 -34.79545 -33.77732 -32.22859 -29.31069 -28.17655 -26.90259 -26.07560 -23.74528 -23.06667 -21.58242 -21.26740 -20.35707 -19.29974 -17.65474 -17.03649 -16.68446 -16.63338 -16.31677 -15.52339 -15.45531 -15.22733 -14.94125 -14.57345 -14.29272 -14.17702 -13.88301 -13.74818 -13.35841 -13.10714 -12.86759 -12.82603 -12.65164 -12.44345 -12.21566 -12.03340 -12.01478 -11.87619 -11.79183 -11.52430 -11.40680 -11.27460 -11.01652 -10.85496 -10.78328 -10.22096 -8.92872 -8.44518 -6.04513 1.27461 1.32140 1.41323 1.91646 2.19896 2.97234 3.00043 3.12638 3.81542 3.90521 4.02031 4.14213 4.22052 4.26339 4.31982 4.36110 4.50119 4.57257 4.61299 4.69544 4.74204 4.81592 4.86355 4.94904 4.99762 5.03263 5.06179 5.15283 5.18189 5.23391 5.24037 5.35249 5.40157 5.44038 5.48627 5.51268 5.59449 5.74988 5.92116 6.11708 6.23692 6.56156 6.86440 7.37290 7.94368 8.73260 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020486 B = 0.005917 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.446128 B = 4730.827988 C = 5417.775247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C -0.110 4.110 4 C 0.071 3.929 5 H 0.033 0.967 6 C -0.079 4.079 7 H 0.069 0.931 8 C -0.131 4.131 9 C -0.116 4.116 10 C -0.105 4.105 11 C 0.037 3.963 12 N -0.489 5.489 13 C 0.040 3.960 14 C 0.420 3.580 15 O -0.610 6.610 16 N -0.591 5.591 17 C -0.326 4.326 18 H 0.052 0.948 19 C -0.015 4.015 20 N -0.935 5.935 21 Si 0.963 3.037 22 H -0.257 1.257 23 H -0.275 1.275 24 H -0.232 1.232 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.030 0.970 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.030 0.970 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.023 0.977 40 H 0.073 0.927 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.388 0.612 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 2.665 20.397 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.037 4.037 5 H 0.051 0.949 6 C -0.098 4.098 7 H 0.087 0.913 8 C -0.188 4.188 9 C -0.154 4.154 10 C -0.143 4.143 11 C -0.091 4.091 12 N -0.210 5.210 13 C -0.092 4.092 14 C 0.208 3.792 15 O -0.495 6.495 16 N -0.232 5.232 17 C -0.455 4.455 18 H 0.070 0.930 19 C -0.213 4.213 20 N -0.576 5.576 21 Si 0.783 3.217 22 H -0.181 1.181 23 H -0.200 1.200 24 H -0.155 1.155 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.041 0.959 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.223 0.777 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.938 2.217 20.613 20.939 hybrid contribution -0.059 -0.013 -2.148 2.149 sum -2.997 2.204 18.465 18.836 Atomic orbital electron populations 1.21732 0.94739 1.01988 1.01916 1.21496 0.96685 0.96459 1.01221 1.21717 0.93634 0.97182 1.02175 1.21874 0.95008 0.88952 0.97867 0.94884 1.21150 0.94681 0.98844 0.95137 0.91305 1.21737 1.01210 1.00990 0.94818 1.21607 0.95985 0.96952 1.00854 1.21535 0.99059 0.95597 0.98060 1.22265 0.87995 1.00623 0.98174 1.62533 1.04909 1.13653 1.39954 1.22375 1.02705 0.99054 0.85084 1.22342 0.82944 0.86599 0.87321 1.90472 1.42868 1.29080 1.87114 1.42267 1.47202 1.27554 1.06176 1.18975 1.31258 1.11079 0.84217 0.92993 1.26114 0.99144 1.02386 0.93692 1.69808 1.46069 1.42581 0.99116 0.85395 0.78588 0.77599 0.80160 1.18112 1.19981 1.15501 0.91084 0.93992 0.92165 0.95058 0.90468 0.89207 0.93865 0.91662 0.92289 0.92417 0.95065 0.90115 0.91409 0.89578 0.95852 0.90832 0.86557 0.86457 0.77665 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.91 71.98 0.71 -2.48 16 2 C -0.12 -3.11 5.49 30.59 0.17 -2.94 16 3 C -0.11 -3.00 4.08 30.59 0.12 -2.87 16 4 C 0.07 2.25 1.18 44.94 0.05 2.30 16 5 H 0.03 1.43 5.53 -2.39 -0.01 1.42 16 6 C -0.08 -2.01 2.43 -10.74 -0.03 -2.04 16 7 H 0.07 1.71 6.66 -2.39 -0.02 1.70 16 8 C -0.13 -2.58 8.38 71.98 0.60 -1.98 16 9 C -0.12 -3.00 5.51 30.68 0.17 -2.83 16 10 C -0.10 -2.62 5.74 30.65 0.18 -2.44 16 11 C 0.04 1.19 5.06 86.33 0.44 1.63 16 12 N -0.49 -14.81 3.97 -875.65 -3.48 -18.29 16 13 C 0.04 1.26 5.33 85.56 0.46 1.72 16 14 C 0.42 18.90 7.16 87.66 0.63 19.53 16 15 O -0.61 -32.88 11.19 -3.07 -0.03 -32.92 16 16 N -0.59 -28.15 5.09 -306.98 -1.56 -29.71 16 17 C -0.33 -19.27 10.16 84.04 0.85 -18.42 16 18 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 19 C -0.01 -0.83 5.50 84.92 0.47 -0.36 16 20 N -0.94 -57.02 13.96 21.66 0.30 -56.72 16 21 Si 0.96 39.33 27.73 68.60 1.90 41.23 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.23 -8.02 6.52 99.48 0.65 -7.37 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.72 6.79 -2.39 -0.02 1.70 16 30 H 0.09 2.05 6.29 -2.39 -0.02 2.04 16 31 H 0.04 1.32 6.14 -2.39 -0.01 1.31 16 32 H 0.06 1.36 6.01 -2.39 -0.01 1.34 16 33 H 0.06 1.09 6.37 -2.39 -0.02 1.08 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.09 1.84 6.58 -2.38 -0.02 1.82 16 39 H 0.02 0.97 5.82 -2.39 -0.01 0.96 16 40 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 41 H 0.12 3.09 8.10 -2.39 -0.02 3.07 16 42 H 0.12 3.22 6.13 -2.39 -0.01 3.21 16 43 H 0.39 15.48 5.77 -92.71 -0.53 14.94 16 44 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -72.42 323.72 2.34 -70.07 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: 0.39 Total: 37.52 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 4.82 Total: -11.19 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -4.74 Total: -104.71 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.03 Total: -32.92 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 1.90 Total: 41.23 kcal Total: -72.42 2.34 -70.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072775986.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.148 kcal (2) G-P(sol) polarization free energy of solvation -72.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds