Wall clock time and date at job start Mon Mar 30 2020 00:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46788 * 2 1 4 4 C 1.52999 * 109.47011 * 184.59010 * 3 2 1 5 5 H 1.08996 * 109.45065 * 182.50060 * 4 3 2 6 6 C 1.53040 * 109.46119 * 62.52860 * 4 3 2 7 7 H 1.09000 * 109.53477 * 300.76122 * 6 4 3 8 8 C 1.52999 * 109.50458 * 60.86215 * 6 4 3 9 9 C 1.53119 * 109.27626 * 180.80402 * 6 4 3 10 10 C 1.53114 * 109.16133 * 57.65516 * 9 6 4 11 11 C 1.53041 * 109.27711 * 302.34352 * 10 9 6 12 12 N 1.46845 * 109.52411 * 59.18240 * 11 10 9 13 13 C 1.46896 * 111.00105 * 174.16097 * 12 11 10 14 14 C 1.50704 * 109.47256 * 63.81103 * 13 12 11 15 15 O 1.21292 * 119.99883 * 359.72671 * 14 13 12 16 16 N 1.34777 * 120.00027 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99613 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00607 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99742 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99758 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00178 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46949 * 89.99940 * 21 19 17 23 23 H 1.48498 * 109.47059 * 209.99976 * 21 19 17 24 24 H 1.48503 * 109.46767 * 330.00051 * 21 19 17 25 25 H 1.09000 * 109.47560 * 299.99398 * 1 2 3 26 26 H 1.09006 * 109.47299 * 60.00009 * 1 2 3 27 27 H 1.09000 * 109.46638 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47560 * 240.00601 * 2 1 3 29 29 H 1.08998 * 109.46983 * 119.99936 * 2 1 3 30 30 H 1.09004 * 109.46879 * 64.59171 * 3 2 1 31 31 H 1.09000 * 109.47171 * 304.59519 * 3 2 1 32 32 H 1.08992 * 109.46957 * 179.80530 * 8 6 4 33 33 H 1.09003 * 109.47047 * 299.80187 * 8 6 4 34 34 H 1.08997 * 109.47237 * 59.79720 * 8 6 4 35 35 H 1.08997 * 109.52325 * 297.74633 * 9 6 4 36 36 H 1.08997 * 109.51891 * 177.55938 * 9 6 4 37 37 H 1.08998 * 109.50426 * 182.40406 * 10 9 6 38 38 H 1.09000 * 109.53897 * 62.30684 * 10 9 6 39 39 H 1.09000 * 109.46107 * 299.16448 * 11 10 9 40 40 H 1.09001 * 109.45319 * 179.19146 * 11 10 9 41 41 H 1.09001 * 109.47031 * 303.81346 * 13 12 11 42 42 H 1.08997 * 109.47486 * 183.81167 * 13 12 11 43 43 H 0.96996 * 119.99742 * 0.02562 * 16 14 13 44 44 H 0.97004 * 119.99569 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5655 1.4442 -0.1154 5 1 3.9318 2.4698 -0.0707 6 6 3.9767 0.8135 -1.4478 7 1 3.5989 -0.2076 -1.4997 8 6 3.3952 1.6327 -2.6018 9 6 5.5044 0.7990 -1.5501 10 6 6.0806 0.0283 -0.3591 11 6 5.6084 0.6819 0.9417 12 7 4.1408 0.6705 0.9921 13 6 3.6547 1.1641 2.2874 14 6 4.0549 2.6070 2.4575 15 8 4.6876 3.1674 1.5876 16 7 3.7150 3.2729 3.5789 17 6 4.0787 4.5858 3.7333 18 1 4.6372 5.0864 2.9563 19 6 3.7279 5.2725 4.8892 20 7 3.0470 4.6637 5.8341 21 14 4.2227 7.0615 5.0994 22 1 3.1558 7.9377 4.5524 23 1 4.4139 7.3559 6.5423 24 1 5.4919 7.3128 4.3704 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7453 1.9321 0.9283 31 1 1.6109 1.9796 -0.8460 32 1 3.6913 1.1850 -3.5504 33 1 2.3077 1.6426 -2.5285 34 1 3.7723 2.6540 -2.5486 35 1 5.8800 1.8221 -1.5381 36 1 5.8027 0.3114 -2.4782 37 1 7.1694 0.0510 -0.4033 38 1 5.7365 -1.0054 -0.3928 39 1 5.9652 1.7111 0.9814 40 1 6.0053 0.1268 1.7917 41 1 4.0908 0.5691 3.0899 42 1 2.5684 1.0817 2.3232 43 1 3.2131 2.8233 4.2766 44 1 2.8024 5.1431 6.6412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072775995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:27 Heat of formation + Delta-G solvation = -55.388999 kcal Electronic energy + Delta-G solvation = -22219.735930 eV Core-core repulsion = 19171.037586 eV Total energy + Delta-G solvation = -3048.698343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.91824 -37.59903 -34.60313 -34.24449 -33.37349 -31.32797 -31.19292 -27.93164 -26.75351 -25.47630 -24.43501 -22.23069 -21.54534 -20.61990 -19.28016 -18.65183 -17.74035 -15.96298 -15.69666 -15.19650 -14.71527 -14.51488 -14.17703 -13.93759 -13.72619 -13.54177 -13.36522 -13.02927 -12.48150 -12.24367 -12.18189 -11.80863 -11.71901 -11.56288 -11.37422 -11.17208 -11.07523 -10.93965 -10.83183 -10.54935 -10.42341 -10.26225 -10.25902 -10.05724 -9.76108 -9.62096 -9.39069 -9.10310 -7.97619 -7.28098 -6.44186 -3.85441 3.14602 3.23922 3.29517 3.86019 4.15475 4.40175 4.97511 5.04743 5.11585 5.15566 5.24025 5.31817 5.39104 5.46102 5.50819 5.74383 5.77754 5.81501 5.86929 5.90522 5.99188 6.05039 6.09413 6.10690 6.17799 6.18265 6.22718 6.27016 6.28952 6.34104 6.41864 6.49678 6.55420 6.66240 6.72035 6.78270 6.96728 7.51959 7.54794 7.65462 8.03099 8.58083 9.14629 9.51604 10.02627 10.72329 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.005447 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.074977 B = 5139.663465 C = 5650.019397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.116 4.116 4 C 0.073 3.927 5 H 0.086 0.914 6 C -0.081 4.081 7 H 0.072 0.928 8 C -0.147 4.147 9 C -0.114 4.114 10 C -0.111 4.111 11 C 0.040 3.960 12 N -0.506 5.506 13 C 0.037 3.963 14 C 0.409 3.591 15 O -0.592 6.592 16 N -0.558 5.558 17 C -0.301 4.301 18 H 0.102 0.898 19 C 0.024 3.976 20 N -0.899 5.899 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.270 1.270 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.211 -9.682 -10.496 14.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.154 4.154 4 C -0.035 4.035 5 H 0.103 0.897 6 C -0.100 4.100 7 H 0.090 0.910 8 C -0.204 4.204 9 C -0.151 4.151 10 C -0.149 4.149 11 C -0.088 4.088 12 N -0.229 5.229 13 C -0.095 4.095 14 C 0.195 3.805 15 O -0.479 6.479 16 N -0.194 5.194 17 C -0.431 4.431 18 H 0.119 0.881 19 C -0.178 4.178 20 N -0.540 5.540 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.195 1.195 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.011 -9.728 -10.928 14.666 hybrid contribution 0.125 1.515 0.867 1.750 sum -0.887 -8.213 -10.062 13.019 Atomic orbital electron populations 1.21828 0.97082 1.00830 1.01373 1.21473 0.94078 0.97165 1.02565 1.21738 0.95087 0.96818 1.01740 1.21904 0.93592 0.98527 0.89513 0.89658 1.21165 0.94936 0.99693 0.94207 0.90952 1.21860 1.00876 1.00236 0.97463 1.21606 0.95558 1.00520 0.97451 1.21519 0.99111 0.99454 0.94787 1.22235 0.88166 1.01686 0.96724 1.62410 1.07488 1.51764 1.01204 1.22108 1.01608 0.92960 0.92794 1.21149 0.85767 0.89465 0.84141 1.90396 1.45021 1.70061 1.42470 1.42067 1.48741 1.11764 1.16810 1.19699 1.33041 0.86866 1.03478 0.88060 1.25273 0.96803 1.00376 0.95388 1.69616 1.38492 1.37727 1.08171 0.85882 0.79120 0.82054 0.77383 1.20396 1.20874 1.19469 0.92986 0.93385 0.93362 0.92268 0.91129 0.92099 0.92016 0.93233 0.92493 0.92774 0.92117 0.92791 0.92351 0.92061 0.91160 0.92149 0.89755 0.89064 0.77450 0.91822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.16 0.37 -1.40 16 2 C -0.12 -1.49 5.38 -26.73 -0.14 -1.63 16 3 C -0.12 -1.75 4.15 -26.73 -0.11 -1.86 16 4 C 0.07 1.19 1.20 -67.72 -0.08 1.11 16 5 H 0.09 1.76 5.55 -51.93 -0.29 1.48 16 6 C -0.08 -1.12 2.13 -90.54 -0.19 -1.31 16 7 H 0.07 0.97 6.36 -51.93 -0.33 0.64 16 8 C -0.15 -1.82 8.86 37.16 0.33 -1.49 16 9 C -0.11 -1.55 5.29 -26.61 -0.14 -1.69 16 10 C -0.11 -1.53 6.09 -26.65 -0.16 -1.69 16 11 C 0.04 0.67 5.06 -3.83 -0.02 0.65 16 12 N -0.51 -8.38 3.95 -228.13 -0.90 -9.28 16 13 C 0.04 0.66 5.10 -4.98 -0.03 0.64 16 14 C 0.41 9.36 7.15 -10.98 -0.08 9.28 16 15 O -0.59 -15.10 11.19 5.55 0.06 -15.04 16 16 N -0.56 -13.99 5.29 -10.96 -0.06 -14.04 16 17 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 18 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16 20 N -0.90 -24.39 13.05 55.50 0.72 -23.67 16 21 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.74 6.26 -51.93 -0.32 0.41 16 29 H 0.07 0.97 7.08 -51.93 -0.37 0.60 16 30 H 0.06 1.03 6.42 -51.93 -0.33 0.70 16 31 H 0.06 0.88 6.33 -51.93 -0.33 0.55 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.67 6.41 -51.93 -0.33 0.34 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.43 5.81 -51.93 -0.30 1.13 16 40 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 42 H 0.09 1.53 5.76 -51.93 -0.30 1.23 16 43 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 44 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -28.52 328.66 -8.13 -36.65 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -7.38 Total: 11.75 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -0.50 Total: -7.32 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.24 Total: -46.99 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.06 Total: -15.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.52 -8.13 -36.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072775995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.740 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds