Wall clock time and date at job start Mon Mar 30 2020 00:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.46788 * 2 1 4 4 C 1.52999 * 109.47011 * 184.59010 * 3 2 1 5 5 H 1.08996 * 109.45065 * 182.50060 * 4 3 2 6 6 C 1.53040 * 109.46119 * 62.52860 * 4 3 2 7 7 H 1.09000 * 109.53477 * 300.76122 * 6 4 3 8 8 C 1.52999 * 109.50458 * 60.86215 * 6 4 3 9 9 C 1.53119 * 109.27626 * 180.80402 * 6 4 3 10 10 C 1.53114 * 109.16133 * 57.65516 * 9 6 4 11 11 C 1.53041 * 109.27711 * 302.34352 * 10 9 6 12 12 N 1.46845 * 109.52411 * 59.18240 * 11 10 9 13 13 C 1.46896 * 111.00105 * 174.16097 * 12 11 10 14 14 C 1.50704 * 109.47256 * 63.81103 * 13 12 11 15 15 O 1.21292 * 119.99883 * 359.72671 * 14 13 12 16 16 N 1.34777 * 120.00027 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99613 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00607 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99742 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99758 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00178 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46949 * 89.99940 * 21 19 17 23 23 H 1.48498 * 109.47059 * 209.99976 * 21 19 17 24 24 H 1.48503 * 109.46767 * 330.00051 * 21 19 17 25 25 H 1.09000 * 109.47560 * 299.99398 * 1 2 3 26 26 H 1.09006 * 109.47299 * 60.00009 * 1 2 3 27 27 H 1.09000 * 109.46638 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47560 * 240.00601 * 2 1 3 29 29 H 1.08998 * 109.46983 * 119.99936 * 2 1 3 30 30 H 1.09004 * 109.46879 * 64.59171 * 3 2 1 31 31 H 1.09000 * 109.47171 * 304.59519 * 3 2 1 32 32 H 1.08992 * 109.46957 * 179.80530 * 8 6 4 33 33 H 1.09003 * 109.47047 * 299.80187 * 8 6 4 34 34 H 1.08997 * 109.47237 * 59.79720 * 8 6 4 35 35 H 1.08997 * 109.52325 * 297.74633 * 9 6 4 36 36 H 1.08997 * 109.51891 * 177.55938 * 9 6 4 37 37 H 1.08998 * 109.50426 * 182.40406 * 10 9 6 38 38 H 1.09000 * 109.53897 * 62.30684 * 10 9 6 39 39 H 1.09000 * 109.46107 * 299.16448 * 11 10 9 40 40 H 1.09001 * 109.45319 * 179.19146 * 11 10 9 41 41 H 1.09001 * 109.47031 * 303.81346 * 13 12 11 42 42 H 1.08997 * 109.47486 * 183.81167 * 13 12 11 43 43 H 0.96996 * 119.99742 * 0.02562 * 16 14 13 44 44 H 0.97004 * 119.99569 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5655 1.4442 -0.1154 5 1 3.9318 2.4698 -0.0707 6 6 3.9767 0.8135 -1.4478 7 1 3.5989 -0.2076 -1.4997 8 6 3.3952 1.6327 -2.6018 9 6 5.5044 0.7990 -1.5501 10 6 6.0806 0.0283 -0.3591 11 6 5.6084 0.6819 0.9417 12 7 4.1408 0.6705 0.9921 13 6 3.6547 1.1641 2.2874 14 6 4.0549 2.6070 2.4575 15 8 4.6876 3.1674 1.5876 16 7 3.7150 3.2729 3.5789 17 6 4.0787 4.5858 3.7333 18 1 4.6372 5.0864 2.9563 19 6 3.7279 5.2725 4.8892 20 7 3.0470 4.6637 5.8341 21 14 4.2227 7.0615 5.0994 22 1 3.1558 7.9377 4.5524 23 1 4.4139 7.3559 6.5423 24 1 5.4919 7.3128 4.3704 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.7453 1.9321 0.9283 31 1 1.6109 1.9796 -0.8460 32 1 3.6913 1.1850 -3.5504 33 1 2.3077 1.6426 -2.5285 34 1 3.7723 2.6540 -2.5486 35 1 5.8800 1.8221 -1.5381 36 1 5.8027 0.3114 -2.4782 37 1 7.1694 0.0510 -0.4033 38 1 5.7365 -1.0054 -0.3928 39 1 5.9652 1.7111 0.9814 40 1 6.0053 0.1268 1.7917 41 1 4.0908 0.5691 3.0899 42 1 2.5684 1.0817 2.3232 43 1 3.2131 2.8233 4.2766 44 1 2.8024 5.1431 6.6412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072775995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:27 Heat of formation + Delta-G solvation = -73.082757 kcal Electronic energy + Delta-G solvation = -22220.503189 eV Core-core repulsion = 19171.037586 eV Total energy + Delta-G solvation = -3049.465602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39393 -39.28414 -36.12771 -35.68826 -34.87889 -33.30410 -32.36294 -29.32000 -28.11176 -26.77941 -26.17836 -23.42271 -22.82058 -21.81278 -21.02659 -20.17256 -19.56333 -17.75302 -16.99353 -16.71152 -16.38453 -15.93312 -15.65146 -15.45471 -15.18074 -15.14755 -14.47351 -14.19079 -13.86372 -13.57256 -13.46680 -13.36344 -13.10852 -12.98272 -12.79982 -12.58642 -12.46173 -12.18181 -12.16117 -12.14430 -12.05374 -11.68276 -11.61813 -11.29153 -11.21225 -10.94469 -10.81626 -10.79222 -9.99554 -8.91144 -8.47288 -5.97855 1.33472 1.37482 1.49973 2.01212 2.26664 3.03743 3.17712 3.27162 3.85286 3.92001 3.99162 4.21956 4.27786 4.31139 4.42355 4.44212 4.50798 4.60894 4.64300 4.68426 4.74008 4.81871 4.91221 4.98569 4.99135 5.07119 5.07913 5.08658 5.17147 5.25440 5.29899 5.32811 5.37409 5.40201 5.45233 5.53979 5.66131 5.70578 5.93578 6.17126 6.26977 6.57576 7.10151 7.53855 8.09353 8.67609 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020750 B = 0.005447 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.074977 B = 5139.663465 C = 5650.019397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 C -0.113 4.113 4 C 0.074 3.926 5 H 0.036 0.964 6 C -0.076 4.076 7 H 0.089 0.911 8 C -0.143 4.143 9 C -0.114 4.114 10 C -0.104 4.104 11 C 0.037 3.963 12 N -0.490 5.490 13 C 0.046 3.954 14 C 0.411 3.589 15 O -0.619 6.619 16 N -0.572 5.572 17 C -0.333 4.333 18 H 0.075 0.925 19 C -0.012 4.012 20 N -0.919 5.919 21 Si 0.990 3.010 22 H -0.271 1.271 23 H -0.269 1.269 24 H -0.275 1.275 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.067 0.933 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.395 0.605 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 -11.366 -11.482 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.143 4.143 3 C -0.150 4.150 4 C -0.035 4.035 5 H 0.054 0.946 6 C -0.095 4.095 7 H 0.107 0.893 8 C -0.201 4.201 9 C -0.151 4.151 10 C -0.142 4.142 11 C -0.091 4.091 12 N -0.212 5.212 13 C -0.086 4.086 14 C 0.198 3.802 15 O -0.507 6.507 16 N -0.209 5.209 17 C -0.462 4.462 18 H 0.093 0.907 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.814 3.186 22 H -0.197 1.197 23 H -0.194 1.194 24 H -0.200 1.200 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.228 0.772 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.516 -11.431 -11.919 16.584 hybrid contribution 0.304 2.018 1.115 2.325 sum -1.212 -9.413 -10.804 14.381 Atomic orbital electron populations 1.21802 0.95855 1.01900 1.01308 1.21392 0.95094 0.95047 1.02806 1.21704 0.94128 0.98552 1.00653 1.21858 0.94422 0.96124 0.91059 0.94578 1.21161 0.95190 1.00326 0.92806 0.89311 1.21839 1.01136 0.99131 0.97996 1.21625 0.95389 0.99380 0.98746 1.21496 0.99942 0.99897 0.92829 1.22262 0.88088 0.99612 0.99102 1.62541 1.07461 1.50594 1.00578 1.22176 1.02677 0.89423 0.94335 1.22158 0.84052 0.91210 0.82783 1.90413 1.45745 1.71368 1.43168 1.42140 1.49697 1.11315 1.17706 1.19617 1.34469 0.88401 1.03749 0.90654 1.26020 0.96400 1.04119 0.94652 1.69677 1.38715 1.39129 1.08453 0.84970 0.78541 0.77260 0.77818 1.19668 1.19391 1.19961 0.93862 0.92721 0.91703 0.91014 0.91744 0.94704 0.91415 0.90854 0.91866 0.94633 0.94664 0.89960 0.91103 0.90180 0.95468 0.91439 0.87899 0.87555 0.77179 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.91 71.98 0.71 -2.40 16 2 C -0.11 -2.49 5.38 30.60 0.16 -2.33 16 3 C -0.11 -3.33 4.15 30.60 0.13 -3.20 16 4 C 0.07 2.42 1.20 44.94 0.05 2.47 16 5 H 0.04 1.58 5.55 -2.39 -0.01 1.56 16 6 C -0.08 -1.97 2.13 -10.74 -0.02 -1.99 16 7 H 0.09 2.06 6.36 -2.39 -0.02 2.05 16 8 C -0.14 -3.31 8.86 71.98 0.64 -2.67 16 9 C -0.11 -2.93 5.29 30.67 0.16 -2.76 16 10 C -0.10 -2.67 6.09 30.65 0.19 -2.49 16 11 C 0.04 1.25 5.06 86.33 0.44 1.69 16 12 N -0.49 -15.98 3.95 -875.65 -3.46 -19.44 16 13 C 0.05 1.64 5.10 85.56 0.44 2.08 16 14 C 0.41 19.54 7.15 87.66 0.63 20.17 16 15 O -0.62 -33.38 11.19 -3.07 -0.03 -33.41 16 16 N -0.57 -29.75 5.29 -306.98 -1.62 -31.37 16 17 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 18 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -50.17 13.05 21.67 0.28 -49.89 16 21 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 27 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.53 6.26 -2.39 -0.01 1.51 16 29 H 0.06 1.61 7.08 -2.39 -0.02 1.59 16 30 H 0.03 1.19 6.42 -2.38 -0.02 1.18 16 31 H 0.07 1.90 6.33 -2.39 -0.02 1.88 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.06 1.37 6.41 -2.39 -0.02 1.35 16 34 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.03 1.15 5.81 -2.39 -0.01 1.14 16 40 H 0.07 2.12 8.09 -2.39 -0.02 2.10 16 41 H 0.10 3.34 8.10 -2.39 -0.02 3.32 16 42 H 0.11 3.54 5.76 -2.39 -0.01 3.52 16 43 H 0.39 19.70 7.90 -92.71 -0.73 18.97 16 44 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -63.83 328.66 2.24 -61.59 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.25 Total: 36.86 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 4.80 Total: -9.92 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -4.80 Total: -100.69 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.03 Total: -33.41 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -63.83 2.24 -61.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072775995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.493 kcal (2) G-P(sol) polarization free energy of solvation -63.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds