Wall clock time and date at job start Mon Mar 30 2020 01:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00362 * 2 1 4 4 C 1.50705 * 119.99806 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.47229 * 95.00139 * 4 2 1 6 6 C 1.46895 * 110.99682 * 287.76424 * 5 4 2 7 7 C 1.50703 * 109.47045 * 160.71766 * 6 5 4 8 8 H 1.08000 * 119.99755 * 4.40477 * 7 6 5 9 9 C 1.37873 * 119.99977 * 184.40504 * 7 6 5 10 10 N 1.31511 * 120.00450 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99811 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47263 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47319 * 120.00053 * 11 9 7 14 14 H 1.48505 * 109.47046 * 239.99865 * 11 9 7 15 15 C 1.46899 * 110.99815 * 163.81288 * 5 4 2 16 16 C 1.52995 * 109.47363 * 293.95202 * 15 5 4 17 17 N 1.46899 * 109.47363 * 180.02562 * 16 15 5 18 18 C 1.47025 * 110.99539 * 46.31809 * 17 16 15 19 19 C 1.53097 * 109.25308 * 182.34909 * 18 17 16 20 20 O 1.43016 * 109.29868 * 303.22155 * 19 18 17 21 21 C 1.43016 * 113.73850 * 58.64265 * 20 19 18 22 22 C 1.47012 * 111.00305 * 169.99743 * 17 16 15 23 23 H 1.07997 * 120.00158 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00006 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47134 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46636 * 300.00267 * 3 2 1 27 27 H 1.08998 * 109.46911 * 59.99950 * 3 2 1 28 28 H 1.08999 * 109.47259 * 334.99383 * 4 2 1 29 29 H 1.09003 * 109.46628 * 214.99813 * 4 2 1 30 30 H 1.08995 * 109.47584 * 280.71851 * 6 5 4 31 31 H 1.09003 * 109.47175 * 40.72251 * 6 5 4 32 32 H 0.97000 * 120.00507 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.46882 * 173.94848 * 15 5 4 34 34 H 1.09001 * 109.47008 * 53.95287 * 15 5 4 35 35 H 1.08999 * 109.47411 * 59.99970 * 16 15 5 36 36 H 1.09001 * 109.47128 * 300.00012 * 16 15 5 37 37 H 1.08997 * 109.46790 * 62.44368 * 18 17 16 38 38 H 1.08997 * 109.54766 * 302.30408 * 18 17 16 39 39 H 1.08998 * 109.50429 * 183.26116 * 19 18 17 40 40 H 1.09006 * 109.50630 * 63.17895 * 19 18 17 41 41 H 1.09003 * 109.50219 * 61.26904 * 21 20 19 42 42 H 1.09001 * 109.50686 * 181.35423 * 21 20 19 43 43 H 1.09003 * 109.50363 * 57.67377 * 22 17 16 44 44 H 1.08997 * 109.50931 * 297.54581 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4129 -1.6683 -1.3805 6 6 1.2246 -2.1010 -2.1278 7 6 1.5005 -2.0098 -3.6066 8 1 2.4841 -1.7333 -3.9563 9 6 0.4970 -2.2793 -4.5129 10 7 -0.7009 -2.6154 -4.0871 11 14 0.8392 -2.1668 -6.3459 12 1 2.2543 -1.7718 -6.5620 13 1 0.5915 -3.4876 -6.9777 14 1 -0.0564 -1.1509 -6.9552 15 6 3.4556 -2.7027 -1.4046 16 6 4.7562 -2.1292 -0.8388 17 7 5.7991 -3.1634 -0.8635 18 6 5.8238 -3.8558 -2.1603 19 6 6.8822 -4.9613 -2.1223 20 8 8.1502 -4.3904 -1.7881 21 6 8.1615 -3.7094 -0.5306 22 6 7.1169 -2.5905 -0.5528 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 3.1352 1.1059 0.0005 26 1 1.8002 1.8766 -0.8900 27 1 1.8003 1.8766 0.8900 28 1 1.4386 -2.0857 0.4335 29 1 2.9742 -1.1991 0.5889 30 1 0.9859 -3.1317 -1.8657 31 1 0.3820 -1.4574 -1.8751 32 1 -1.4070 -2.8047 -4.7247 33 1 3.6191 -3.0298 -2.4314 34 1 3.1391 -3.5519 -0.7989 35 1 4.5927 -1.8021 0.1880 36 1 5.0727 -1.2801 -1.4445 37 1 6.0697 -3.1434 -2.9478 38 1 4.8460 -4.2948 -2.3580 39 1 6.9445 -5.4392 -3.0999 40 1 6.6076 -5.7025 -1.3717 41 1 7.9237 -4.4136 0.2668 42 1 9.1493 -3.2826 -0.3566 43 1 7.0820 -2.1057 0.4229 44 1 7.3842 -1.8581 -1.3144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078686634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:47 Heat of formation + Delta-G solvation = -15.044416 kcal Electronic energy + Delta-G solvation = -21386.395597 eV Core-core repulsion = 18339.446726 eV Total energy + Delta-G solvation = -3046.948871 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.57466 -37.64887 -35.73149 -33.90606 -32.45614 -31.22120 -29.43002 -27.37481 -26.88224 -26.07534 -24.16651 -24.00514 -21.89513 -20.50411 -19.80649 -17.93602 -16.69990 -16.24939 -16.10937 -15.28194 -15.07195 -14.99049 -14.74541 -14.32478 -14.17198 -13.85916 -13.65574 -13.16391 -12.68149 -12.62403 -12.27583 -12.21726 -11.84655 -11.67671 -11.38208 -11.22081 -11.09351 -10.97042 -10.71665 -10.64317 -10.57607 -10.31584 -10.15241 -9.78912 -9.63016 -9.17638 -8.50031 -8.37534 -8.26793 -7.25838 -6.01331 -4.01882 2.78308 3.30230 3.37990 3.42493 3.75845 3.92924 4.43691 4.83775 5.00462 5.05842 5.11494 5.17908 5.29038 5.34504 5.40201 5.44846 5.49506 5.56551 5.59986 5.70924 5.76855 5.86926 5.97304 6.00029 6.01918 6.06184 6.10519 6.19567 6.38212 6.42942 6.51616 6.54126 7.00831 7.05611 7.13531 7.13881 7.29422 7.34591 7.44715 7.82230 8.13363 8.21792 8.54845 9.05218 9.61696 11.09328 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.006012 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.824822 B = 4656.590532 C = 6338.697688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.108 4.108 3 C -0.106 4.106 4 C 0.085 3.915 5 N -0.529 5.529 6 C 0.188 3.812 7 C -0.501 4.501 8 H 0.060 0.940 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.062 3.938 16 C 0.058 3.942 17 N -0.537 5.537 18 C 0.010 3.990 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.018 3.982 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.028 0.972 29 H 0.065 0.935 30 H -0.014 1.014 31 H 0.045 0.955 32 H 0.260 0.740 33 H 0.084 0.916 34 H 0.027 0.973 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.333 0.358 8.906 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.109 4.109 3 C -0.163 4.163 4 C -0.043 4.043 5 N -0.254 5.254 6 C 0.063 3.937 7 C -0.540 4.540 8 H 0.078 0.922 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.210 1.210 15 C -0.066 4.066 16 C -0.069 4.069 17 N -0.263 5.263 18 C -0.118 4.118 19 C -0.013 4.013 20 O -0.308 6.308 21 C -0.012 4.012 22 C -0.110 4.110 23 H 0.109 0.891 24 H 0.114 0.886 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.004 0.996 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.401 0.361 8.844 15.236 hybrid contribution -0.500 -0.001 -1.158 1.261 sum 11.902 0.360 7.686 14.172 Atomic orbital electron populations 1.23577 0.95439 1.01368 1.02456 1.21534 0.94988 0.95467 0.98908 1.20691 0.99908 0.94739 1.00933 1.21170 0.97810 0.93501 0.91824 1.62086 1.12511 1.40426 1.10382 1.19848 0.87053 0.93916 0.92882 1.21163 0.97059 1.45306 0.90437 0.92156 1.24960 0.95036 0.95594 0.98962 1.69959 1.02055 1.47584 1.34219 0.86507 0.78353 0.77542 0.85413 1.19759 1.21132 1.21044 1.22063 0.90496 0.92786 1.01280 1.22220 0.91259 0.92532 1.00916 1.62273 1.04251 1.29087 1.30686 1.22906 1.01065 0.97231 0.90573 1.22708 0.82720 0.94668 1.01196 1.87956 1.32265 1.72562 1.38022 1.22628 0.98649 0.93632 0.86294 1.22753 0.89814 0.96804 1.01675 0.89125 0.88616 0.92361 0.91791 0.92739 0.95348 0.91632 0.99586 0.93720 0.93051 0.89746 0.95473 0.91007 0.93966 0.93676 0.88414 0.88512 0.92405 0.92470 0.88810 0.89917 0.94008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.36 12.45 29.01 0.36 -3.00 16 2 C -0.11 -1.90 5.21 -101.06 -0.53 -2.42 16 3 C -0.11 -1.57 10.05 36.01 0.36 -1.21 16 4 C 0.08 1.54 4.94 -4.97 -0.02 1.51 16 5 N -0.53 -11.17 4.37 -237.52 -1.04 -12.21 16 6 C 0.19 4.83 4.58 -4.98 -0.02 4.81 16 7 C -0.50 -13.98 8.60 -34.44 -0.30 -14.28 16 8 H 0.06 1.69 7.64 -52.49 -0.40 1.29 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 11 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.06 1.17 4.05 -3.83 -0.02 1.15 16 16 C 0.06 0.91 5.24 -3.83 -0.02 0.89 16 17 N -0.54 -7.58 4.87 -234.31 -1.14 -8.72 16 18 C 0.01 0.15 4.94 -3.71 -0.02 0.13 16 19 C 0.06 0.79 7.01 37.21 0.26 1.05 16 20 O -0.39 -5.13 10.83 -35.23 -0.38 -5.51 16 21 C 0.07 0.70 7.01 37.21 0.26 0.97 16 22 C 0.02 0.21 5.63 -3.72 -0.02 0.19 16 23 H 0.09 1.43 8.05 -52.49 -0.42 1.01 16 24 H 0.10 1.80 7.68 -52.49 -0.40 1.39 16 25 H 0.06 0.83 8.00 -51.93 -0.42 0.41 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.03 0.53 7.89 -51.93 -0.41 0.12 16 29 H 0.07 1.04 5.93 -51.93 -0.31 0.74 16 30 H -0.01 -0.38 8.00 -51.93 -0.42 -0.79 16 31 H 0.04 1.22 5.67 -51.93 -0.29 0.93 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.08 1.73 5.43 -51.93 -0.28 1.45 16 34 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 35 H 0.07 1.06 6.28 -51.93 -0.33 0.73 16 36 H 0.04 0.70 8.08 -51.93 -0.42 0.28 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.10 1.46 6.05 -51.93 -0.31 1.15 16 39 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -30.20 343.80 -9.24 -39.44 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -7.77 Total: -0.24 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 0.20 Total: -8.74 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -1.44 Total: -46.80 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.38 Total: -5.51 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.20 -9.24 -39.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078686634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.396 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds