Wall clock time and date at job start Mon Mar 30 2020 01:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 120.00362 * 2 1 4 4 C 1.50705 * 119.99806 * 180.02562 * 2 1 3 5 5 N 1.46903 * 109.47229 * 95.00139 * 4 2 1 6 6 C 1.46895 * 110.99682 * 287.76424 * 5 4 2 7 7 C 1.50703 * 109.47045 * 160.71766 * 6 5 4 8 8 H 1.08000 * 119.99755 * 4.40477 * 7 6 5 9 9 C 1.37873 * 119.99977 * 184.40504 * 7 6 5 10 10 N 1.31511 * 120.00450 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99811 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47263 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47319 * 120.00053 * 11 9 7 14 14 H 1.48505 * 109.47046 * 239.99865 * 11 9 7 15 15 C 1.46899 * 110.99815 * 163.81288 * 5 4 2 16 16 C 1.52995 * 109.47363 * 293.95202 * 15 5 4 17 17 N 1.46899 * 109.47363 * 180.02562 * 16 15 5 18 18 C 1.47025 * 110.99539 * 46.31809 * 17 16 15 19 19 C 1.53097 * 109.25308 * 182.34909 * 18 17 16 20 20 O 1.43016 * 109.29868 * 303.22155 * 19 18 17 21 21 C 1.43016 * 113.73850 * 58.64265 * 20 19 18 22 22 C 1.47012 * 111.00305 * 169.99743 * 17 16 15 23 23 H 1.07997 * 120.00158 * 0.02562 * 1 2 3 24 24 H 1.07999 * 120.00006 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47134 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.46636 * 300.00267 * 3 2 1 27 27 H 1.08998 * 109.46911 * 59.99950 * 3 2 1 28 28 H 1.08999 * 109.47259 * 334.99383 * 4 2 1 29 29 H 1.09003 * 109.46628 * 214.99813 * 4 2 1 30 30 H 1.08995 * 109.47584 * 280.71851 * 6 5 4 31 31 H 1.09003 * 109.47175 * 40.72251 * 6 5 4 32 32 H 0.97000 * 120.00507 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.46882 * 173.94848 * 15 5 4 34 34 H 1.09001 * 109.47008 * 53.95287 * 15 5 4 35 35 H 1.08999 * 109.47411 * 59.99970 * 16 15 5 36 36 H 1.09001 * 109.47128 * 300.00012 * 16 15 5 37 37 H 1.08997 * 109.46790 * 62.44368 * 18 17 16 38 38 H 1.08997 * 109.54766 * 302.30408 * 18 17 16 39 39 H 1.08998 * 109.50429 * 183.26116 * 19 18 17 40 40 H 1.09006 * 109.50630 * 63.17895 * 19 18 17 41 41 H 1.09003 * 109.50219 * 61.26904 * 21 20 19 42 42 H 1.09001 * 109.50686 * 181.35423 * 21 20 19 43 43 H 1.09003 * 109.50363 * 57.67377 * 22 17 16 44 44 H 1.08997 * 109.50931 * 297.54581 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3052 -0.0006 5 7 2.4129 -1.6683 -1.3805 6 6 1.2246 -2.1010 -2.1278 7 6 1.5005 -2.0098 -3.6066 8 1 2.4841 -1.7333 -3.9563 9 6 0.4970 -2.2793 -4.5129 10 7 -0.7009 -2.6154 -4.0871 11 14 0.8392 -2.1668 -6.3459 12 1 2.2543 -1.7718 -6.5620 13 1 0.5915 -3.4876 -6.9777 14 1 -0.0564 -1.1509 -6.9552 15 6 3.4556 -2.7027 -1.4046 16 6 4.7562 -2.1292 -0.8388 17 7 5.7991 -3.1634 -0.8635 18 6 5.8238 -3.8558 -2.1603 19 6 6.8822 -4.9613 -2.1223 20 8 8.1502 -4.3904 -1.7881 21 6 8.1615 -3.7094 -0.5306 22 6 7.1169 -2.5905 -0.5528 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5400 -0.9353 -0.0004 25 1 3.1352 1.1059 0.0005 26 1 1.8002 1.8766 -0.8900 27 1 1.8003 1.8766 0.8900 28 1 1.4386 -2.0857 0.4335 29 1 2.9742 -1.1991 0.5889 30 1 0.9859 -3.1317 -1.8657 31 1 0.3820 -1.4574 -1.8751 32 1 -1.4070 -2.8047 -4.7247 33 1 3.6191 -3.0298 -2.4314 34 1 3.1391 -3.5519 -0.7989 35 1 4.5927 -1.8021 0.1880 36 1 5.0727 -1.2801 -1.4445 37 1 6.0697 -3.1434 -2.9478 38 1 4.8460 -4.2948 -2.3580 39 1 6.9445 -5.4392 -3.0999 40 1 6.6076 -5.7025 -1.3717 41 1 7.9237 -4.4136 0.2668 42 1 9.1493 -3.2826 -0.3566 43 1 7.0820 -2.1057 0.4229 44 1 7.3842 -1.8581 -1.3144 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078686634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:47 Heat of formation + Delta-G solvation = -36.155100 kcal Electronic energy + Delta-G solvation = -21387.311025 eV Core-core repulsion = 18339.446726 eV Total energy + Delta-G solvation = -3047.864299 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.64966 -39.16567 -36.90284 -35.50476 -34.43339 -32.20535 -30.87935 -29.20477 -28.12187 -27.36444 -25.91774 -25.02580 -23.51106 -21.87885 -21.09669 -19.39380 -18.51906 -17.67770 -17.11356 -16.74559 -16.41913 -16.32924 -15.99837 -15.74788 -15.59798 -15.28276 -14.99081 -14.50014 -14.36434 -13.96263 -13.86673 -13.50536 -13.24715 -12.98930 -12.92582 -12.64646 -12.50043 -12.39261 -12.33534 -12.22810 -12.12650 -11.76907 -11.56334 -11.38562 -11.18835 -10.65103 -10.60005 -9.87081 -9.41759 -9.03504 -8.19436 -6.28452 1.35507 1.38346 1.39345 1.51800 2.39125 2.67769 2.96530 3.12844 3.48406 3.88246 3.94723 4.01699 4.04442 4.07115 4.19259 4.22571 4.33632 4.41363 4.47950 4.60266 4.64311 4.68700 4.73621 4.80243 4.83744 4.88541 4.90645 4.95289 5.01052 5.06843 5.10097 5.19337 5.21901 5.30697 5.64694 5.75438 5.86169 5.97586 6.03162 6.10881 6.17691 6.39473 6.61287 6.86360 7.40246 8.91254 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013119 B = 0.006012 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.824822 B = 4656.590532 C = 6338.697688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.101 4.101 4 C 0.084 3.916 5 N -0.533 5.533 6 C 0.204 3.796 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.004 3.996 10 N -0.933 5.933 11 Si 0.962 3.038 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.068 3.932 16 C 0.074 3.926 17 N -0.540 5.540 18 C 0.011 3.989 19 C 0.069 3.931 20 O -0.404 6.404 21 C 0.063 3.937 22 C 0.017 3.983 23 H 0.110 0.890 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.017 0.983 29 H 0.095 0.905 30 H -0.047 1.047 31 H 0.025 0.975 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.088 0.912 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.104 0.896 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.292 1.170 9.307 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.116 4.116 3 C -0.157 4.157 4 C -0.044 4.044 5 N -0.257 5.257 6 C 0.078 3.922 7 C -0.553 4.553 8 H 0.074 0.926 9 C -0.194 4.194 10 N -0.574 5.574 11 Si 0.787 3.213 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.060 4.060 16 C -0.053 4.053 17 N -0.266 5.266 18 C -0.117 4.117 19 C -0.008 4.008 20 O -0.323 6.323 21 C -0.013 4.013 22 C -0.111 4.111 23 H 0.128 0.872 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.035 0.965 29 H 0.113 0.887 30 H -0.029 1.029 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.106 0.894 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.122 0.878 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.385 1.176 9.263 17.150 hybrid contribution -1.103 -0.277 -1.216 1.664 sum 13.282 0.899 8.048 15.556 Atomic orbital electron populations 1.23643 0.95867 1.01301 1.03138 1.21812 0.95120 0.96395 0.98279 1.20696 0.99940 0.93180 1.01926 1.21284 0.99149 0.93672 0.90263 1.62009 1.11011 1.40678 1.11995 1.19477 0.88380 0.91518 0.92832 1.21422 0.96904 1.45262 0.91731 0.92601 1.25820 0.94741 0.95044 1.03765 1.70081 1.02998 1.48352 1.35929 0.85438 0.78459 0.77803 0.79557 1.19030 1.20359 1.20436 1.21995 0.91515 0.92297 1.00197 1.21999 0.89877 0.92300 1.01161 1.62313 1.05208 1.28663 1.30403 1.22871 1.01017 0.97555 0.90298 1.22708 0.81944 0.93904 1.02259 1.87942 1.32321 1.72824 1.39245 1.22829 0.99633 0.93311 0.85568 1.22880 0.88565 0.97181 1.02454 0.87206 0.90816 0.91524 0.92501 0.89910 0.96520 0.88662 1.02911 0.95675 0.92792 0.91969 0.96139 0.89410 0.94788 0.95173 0.89990 0.87267 0.91709 0.91722 0.86226 0.87825 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.17 12.45 67.78 0.84 -6.33 16 2 C -0.12 -3.96 5.21 -16.48 -0.09 -4.05 16 3 C -0.10 -2.76 10.05 71.24 0.72 -2.04 16 4 C 0.08 3.01 4.94 85.56 0.42 3.43 16 5 N -0.53 -22.83 4.37 -905.37 -3.96 -26.79 16 6 C 0.20 10.93 4.58 85.56 0.39 11.32 16 7 C -0.51 -29.43 8.60 25.60 0.22 -29.21 16 8 H 0.06 3.18 7.64 -2.91 -0.02 3.16 16 9 C 0.00 0.24 5.46 84.65 0.46 0.70 16 10 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 11 Si 0.96 44.82 29.54 68.60 2.03 46.84 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 C 0.07 2.60 4.05 86.30 0.35 2.95 16 16 C 0.07 2.23 5.24 86.30 0.45 2.68 16 17 N -0.54 -14.53 4.87 -895.22 -4.36 -18.89 16 18 C 0.01 0.31 4.94 86.31 0.43 0.73 16 19 C 0.07 1.61 7.01 72.01 0.50 2.11 16 20 O -0.40 -9.86 10.83 -148.98 -1.61 -11.48 16 21 C 0.06 1.19 7.01 72.01 0.50 1.70 16 22 C 0.02 0.37 5.63 86.31 0.49 0.85 16 23 H 0.11 3.41 8.05 -2.91 -0.02 3.39 16 24 H 0.07 2.91 7.68 -2.91 -0.02 2.89 16 25 H 0.07 1.70 8.00 -2.39 -0.02 1.68 16 26 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.02 0.64 7.89 -2.39 -0.02 0.62 16 29 H 0.10 2.84 5.93 -2.39 -0.01 2.83 16 30 H -0.05 -2.75 8.00 -2.39 -0.02 -2.77 16 31 H 0.03 1.44 5.67 -2.39 -0.01 1.42 16 32 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 33 H 0.06 2.64 5.43 -2.39 -0.01 2.63 16 34 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 35 H 0.09 2.36 6.28 -2.39 -0.01 2.34 16 36 H 0.03 1.08 8.08 -2.39 -0.02 1.07 16 37 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.08 2.53 6.05 -2.39 -0.01 2.52 16 39 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -65.77 343.80 -0.99 -66.76 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.94 Total: 14.88 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 5.70 Total: -15.14 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -8.04 Total: -101.87 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -1.61 Total: -11.48 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -65.77 -0.99 -66.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078686634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.604 kcal (2) G-P(sol) polarization free energy of solvation -65.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds