Wall clock time and date at job start Mon Mar 30 2020 01:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47664 * 2 1 4 4 C 1.52999 * 109.47578 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47290 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99908 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99912 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99938 * 179.97438 * 6 5 4 9 9 N 1.46898 * 109.47117 * 179.97438 * 8 6 5 10 10 C 1.46901 * 111.00149 * 189.99810 * 9 8 6 11 11 C 1.50697 * 109.46589 * 68.58010 * 10 9 8 12 12 H 1.07998 * 120.00714 * 356.74156 * 11 10 9 13 13 C 1.37884 * 119.99946 * 176.74782 * 11 10 9 14 14 N 1.31508 * 120.00239 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99720 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.46853 * 90.00558 * 15 13 11 17 17 H 1.48498 * 109.47326 * 209.99914 * 15 13 11 18 18 H 1.48503 * 109.47267 * 330.00808 * 15 13 11 19 19 C 1.46907 * 110.99812 * 66.04962 * 9 8 6 20 20 C 1.52999 * 109.46988 * 200.00616 * 19 9 8 21 21 C 1.53004 * 117.49520 * 242.64166 * 20 19 9 22 22 C 1.52993 * 60.00018 * 252.51438 * 21 20 19 23 23 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47224 * 300.00096 * 1 2 3 25 25 H 1.09004 * 109.46736 * 59.99672 * 1 2 3 26 26 H 1.09001 * 109.47224 * 239.99904 * 2 1 3 27 27 H 1.09005 * 109.47179 * 120.00623 * 2 1 3 28 28 H 1.09006 * 109.46738 * 60.00154 * 3 2 1 29 29 H 1.08995 * 109.47462 * 300.00566 * 3 2 1 30 30 H 1.09006 * 109.46671 * 60.00467 * 4 3 2 31 31 H 1.08995 * 109.47476 * 300.00912 * 4 3 2 32 32 H 0.97000 * 119.99827 * 0.02562 * 5 4 3 33 33 H 1.09006 * 109.46933 * 60.00162 * 8 6 5 34 34 H 1.08992 * 109.46998 * 299.99891 * 8 6 5 35 35 H 1.09002 * 109.47209 * 188.57716 * 10 9 8 36 36 H 1.08997 * 109.47360 * 308.57880 * 10 9 8 37 37 H 0.96995 * 120.00427 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.46939 * 320.00585 * 19 9 8 39 39 H 1.08993 * 109.47311 * 80.00302 * 19 9 8 40 40 H 1.08991 * 115.55475 * 28.35172 * 20 19 9 41 41 H 1.08999 * 117.49791 * 0.02562 * 21 20 19 42 42 H 1.09004 * 117.49219 * 145.01926 * 21 20 19 43 43 H 1.09003 * 117.49794 * 252.51070 * 22 21 20 44 44 H 1.08998 * 117.50159 * 107.49507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 5.3836 3.0698 0.0014 7 8 6.1716 2.1479 0.0014 8 6 5.8860 4.4906 0.0014 9 7 7.3549 4.4905 0.0022 10 6 7.8814 5.8411 0.2403 11 6 7.5762 6.2565 1.6564 12 1 6.9990 5.6067 2.2974 13 6 8.0340 7.4664 2.1338 14 7 7.7673 7.8292 3.3694 15 14 9.0329 8.5902 1.0253 16 1 8.1191 9.5058 0.2959 17 1 9.9773 9.3865 1.8494 18 1 9.7963 7.7717 0.0492 19 6 7.8820 3.9335 -1.2509 20 6 9.3300 3.4864 -1.0410 21 6 10.4124 4.1886 -1.8633 22 6 10.0154 2.7483 -2.1927 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 1.6768 1.9563 -0.8899 30 1 3.9337 0.9284 -0.8892 31 1 3.9331 0.9286 0.8907 32 1 3.4281 3.5608 0.0016 33 1 5.5226 5.0044 0.8915 34 1 5.5228 5.0044 -0.8885 35 1 8.9604 5.8430 0.0856 36 1 7.4137 6.5408 -0.4524 37 1 8.0896 8.6802 3.7053 38 1 7.2772 3.0777 -1.5508 39 1 7.8461 4.6946 -2.0303 40 1 9.5861 3.1833 -0.0259 41 1 10.0929 4.9694 -2.5535 42 1 11.3808 4.3478 -1.3889 43 1 10.7226 1.9598 -1.9351 44 1 9.4347 2.5812 -3.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081062007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:34 Heat of formation + Delta-G solvation = -20.318159 kcal Electronic energy + Delta-G solvation = -20648.826363 eV Core-core repulsion = 17601.648805 eV Total energy + Delta-G solvation = -3047.177558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.49467 -37.55268 -36.20932 -35.18114 -33.60084 -32.40097 -29.59897 -28.23675 -27.43609 -24.32186 -23.13347 -21.99216 -21.48653 -20.94155 -20.00711 -19.51164 -16.94549 -16.60965 -16.05224 -15.84009 -15.40049 -14.72670 -14.50882 -14.24807 -13.90457 -13.67665 -13.41877 -13.34968 -13.04735 -12.55474 -12.33347 -12.05744 -11.83655 -11.67514 -11.37612 -11.33035 -11.31933 -11.17325 -10.86641 -10.80585 -10.67184 -10.53758 -9.95697 -9.75548 -9.52143 -9.28472 -9.06675 -8.82474 -8.57351 -7.37128 -6.05093 -4.02421 3.09618 3.28230 3.35422 3.38791 3.40254 4.23141 4.42594 4.62759 4.69116 4.71198 4.82591 5.15329 5.18150 5.25931 5.28556 5.35468 5.37786 5.45312 5.54017 5.55995 5.66293 5.76622 5.81249 5.88758 5.92764 5.92919 6.02412 6.07815 6.11988 6.19399 6.20793 6.37005 6.45107 6.65735 6.78758 6.87476 6.97157 7.60301 7.70818 7.93309 8.04297 8.62924 8.67863 9.02833 9.56762 11.07933 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.004473 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.008558 B = 6258.740272 C = 7713.818279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.121 3.879 5 N -0.742 5.742 6 C 0.513 3.487 7 O -0.522 6.522 8 C 0.044 3.956 9 N -0.507 5.507 10 C 0.163 3.837 11 C -0.510 4.510 12 H 0.080 0.920 13 C 0.070 3.930 14 N -0.900 5.900 15 Si 0.872 3.128 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.085 3.915 20 C -0.121 4.121 21 C -0.188 4.188 22 C -0.185 4.185 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.118 0.882 34 H 0.049 0.951 35 H 0.039 0.961 36 H -0.017 1.017 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.020 0.980 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.945 -11.022 -10.514 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.170 4.170 4 C -0.003 4.003 5 N -0.396 5.396 6 C 0.300 3.700 7 O -0.397 6.397 8 C -0.087 4.087 9 N -0.231 5.231 10 C 0.037 3.963 11 C -0.548 4.548 12 H 0.098 0.902 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.700 3.300 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.044 4.044 20 C -0.140 4.140 21 C -0.225 4.225 22 C -0.222 4.222 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.136 0.864 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.000 1.000 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.038 0.962 40 H 0.131 0.869 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.151 -11.847 -9.991 17.998 hybrid contribution -0.029 1.649 -1.082 1.973 sum -9.180 -10.198 -11.074 17.633 Atomic orbital electron populations 1.21767 0.95653 1.01650 1.01884 1.21435 0.95945 0.96139 1.02485 1.21831 0.94541 0.97830 1.02773 1.21266 0.93251 0.83686 1.02092 1.46070 1.07556 1.08338 1.77670 1.21041 0.81495 0.92408 0.75104 1.90655 1.54953 1.46387 1.47708 1.21904 0.91383 0.92018 1.03425 1.61571 1.03719 1.25311 1.32515 1.20263 0.95832 0.83098 0.97145 1.21050 1.34673 1.03319 0.95783 0.90211 1.24882 0.95822 0.97627 0.94869 1.69888 1.46469 1.22370 1.15179 0.86898 0.80821 0.81159 0.81149 1.20410 1.21194 1.18876 1.21702 0.94087 0.98095 0.90484 1.22211 0.92901 1.02155 0.96730 1.23014 1.00325 0.94960 1.04244 1.22886 1.04110 0.95002 1.00237 0.92717 0.92633 0.92757 0.91771 0.91625 0.91188 0.91416 0.91999 0.91742 0.76789 0.86381 0.93367 0.94289 0.99982 0.92682 0.90449 0.96222 0.86851 0.89478 0.89242 0.89278 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.90 5.93 -26.74 -0.16 -1.06 16 3 C -0.13 -1.08 5.33 -26.73 -0.14 -1.22 16 4 C 0.12 1.37 5.67 -4.04 -0.02 1.35 16 5 N -0.74 -9.60 5.56 -60.29 -0.33 -9.94 16 6 C 0.51 8.90 7.34 -10.98 -0.08 8.82 16 7 O -0.52 -10.82 14.55 5.56 0.08 -10.74 16 8 C 0.04 0.82 5.29 -4.98 -0.03 0.79 16 9 N -0.51 -10.98 4.14 -237.51 -0.98 -11.96 16 10 C 0.16 3.93 3.63 -4.98 -0.02 3.91 16 11 C -0.51 -14.30 9.02 -34.44 -0.31 -14.61 16 12 H 0.08 2.44 7.48 -52.49 -0.39 2.04 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 15 Si 0.87 21.34 27.53 -169.99 -4.68 16.66 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.26 -6.26 6.45 56.52 0.36 -5.89 16 19 C 0.08 1.61 4.77 -3.82 -0.02 1.59 16 20 C -0.12 -2.21 5.20 -90.62 -0.47 -2.68 16 21 C -0.19 -3.01 10.18 -26.73 -0.27 -3.28 16 22 C -0.18 -2.74 10.25 -26.74 -0.27 -3.01 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.40 4.09 8.47 -40.82 -0.35 3.75 16 33 H 0.12 2.33 6.77 -51.93 -0.35 1.98 16 34 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 35 H 0.04 0.97 6.24 -51.93 -0.32 0.65 16 36 H -0.02 -0.41 7.69 -51.93 -0.40 -0.81 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.08 1.47 5.85 -51.93 -0.30 1.16 16 39 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 40 H 0.11 2.28 8.14 -51.93 -0.42 1.86 16 41 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 354.93 15.07 5.35 5.35 Total: -1.00 -32.34 354.93 -9.35 -41.68 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.03 Total: 3.62 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.52 Total: -8.14 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.55 Total: -48.44 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.68 Total: 16.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.34 -9.35 -41.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081062007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.364 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds