Wall clock time and date at job start Mon Mar 30 2020 01:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47664 * 2 1 4 4 C 1.52999 * 109.47578 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47290 * 180.02562 * 4 3 2 6 6 C 1.34778 * 119.99908 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99912 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99938 * 179.97438 * 6 5 4 9 9 N 1.46898 * 109.47117 * 179.97438 * 8 6 5 10 10 C 1.46901 * 111.00149 * 189.99810 * 9 8 6 11 11 C 1.50697 * 109.46589 * 68.58010 * 10 9 8 12 12 H 1.07998 * 120.00714 * 356.74156 * 11 10 9 13 13 C 1.37884 * 119.99946 * 176.74782 * 11 10 9 14 14 N 1.31508 * 120.00239 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99720 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.46853 * 90.00558 * 15 13 11 17 17 H 1.48498 * 109.47326 * 209.99914 * 15 13 11 18 18 H 1.48503 * 109.47267 * 330.00808 * 15 13 11 19 19 C 1.46907 * 110.99812 * 66.04962 * 9 8 6 20 20 C 1.52999 * 109.46988 * 200.00616 * 19 9 8 21 21 C 1.53004 * 117.49520 * 242.64166 * 20 19 9 22 22 C 1.52993 * 60.00018 * 252.51438 * 21 20 19 23 23 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47224 * 300.00096 * 1 2 3 25 25 H 1.09004 * 109.46736 * 59.99672 * 1 2 3 26 26 H 1.09001 * 109.47224 * 239.99904 * 2 1 3 27 27 H 1.09005 * 109.47179 * 120.00623 * 2 1 3 28 28 H 1.09006 * 109.46738 * 60.00154 * 3 2 1 29 29 H 1.08995 * 109.47462 * 300.00566 * 3 2 1 30 30 H 1.09006 * 109.46671 * 60.00467 * 4 3 2 31 31 H 1.08995 * 109.47476 * 300.00912 * 4 3 2 32 32 H 0.97000 * 119.99827 * 0.02562 * 5 4 3 33 33 H 1.09006 * 109.46933 * 60.00162 * 8 6 5 34 34 H 1.08992 * 109.46998 * 299.99891 * 8 6 5 35 35 H 1.09002 * 109.47209 * 188.57716 * 10 9 8 36 36 H 1.08997 * 109.47360 * 308.57880 * 10 9 8 37 37 H 0.96995 * 120.00427 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.46939 * 320.00585 * 19 9 8 39 39 H 1.08993 * 109.47311 * 80.00302 * 19 9 8 40 40 H 1.08991 * 115.55475 * 28.35172 * 20 19 9 41 41 H 1.08999 * 117.49791 * 0.02562 * 21 20 19 42 42 H 1.09004 * 117.49219 * 145.01926 * 21 20 19 43 43 H 1.09003 * 117.49794 * 252.51070 * 22 21 20 44 44 H 1.08998 * 117.50159 * 107.49507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 5.3836 3.0698 0.0014 7 8 6.1716 2.1479 0.0014 8 6 5.8860 4.4906 0.0014 9 7 7.3549 4.4905 0.0022 10 6 7.8814 5.8411 0.2403 11 6 7.5762 6.2565 1.6564 12 1 6.9990 5.6067 2.2974 13 6 8.0340 7.4664 2.1338 14 7 7.7673 7.8292 3.3694 15 14 9.0329 8.5902 1.0253 16 1 8.1191 9.5058 0.2959 17 1 9.9773 9.3865 1.8494 18 1 9.7963 7.7717 0.0492 19 6 7.8820 3.9335 -1.2509 20 6 9.3300 3.4864 -1.0410 21 6 10.4124 4.1886 -1.8633 22 6 10.0154 2.7483 -2.1927 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 1.6768 1.9563 -0.8899 30 1 3.9337 0.9284 -0.8892 31 1 3.9331 0.9286 0.8907 32 1 3.4281 3.5608 0.0016 33 1 5.5226 5.0044 0.8915 34 1 5.5228 5.0044 -0.8885 35 1 8.9604 5.8430 0.0856 36 1 7.4137 6.5408 -0.4524 37 1 8.0896 8.6802 3.7053 38 1 7.2772 3.0777 -1.5508 39 1 7.8461 4.6946 -2.0303 40 1 9.5861 3.1833 -0.0259 41 1 10.0929 4.9694 -2.5535 42 1 11.3808 4.3478 -1.3889 43 1 10.7226 1.9598 -1.9351 44 1 9.4347 2.5812 -3.0998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081062007.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:33 Heat of formation + Delta-G solvation = -42.080311 kcal Electronic energy + Delta-G solvation = -20649.770041 eV Core-core repulsion = 17601.648805 eV Total energy + Delta-G solvation = -3048.121235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.89016 -38.93650 -37.20992 -36.66482 -34.60730 -34.53255 -30.78522 -30.04278 -28.65019 -25.89757 -24.24690 -23.18558 -22.62175 -22.25042 -21.32264 -20.96161 -18.98067 -18.07367 -17.14572 -17.05006 -16.64292 -16.37733 -15.91889 -15.53868 -15.23675 -15.07883 -14.64752 -14.44596 -14.37894 -14.19903 -13.70650 -13.34317 -13.24519 -13.04753 -12.59428 -12.46240 -12.40544 -12.29469 -12.21871 -12.07354 -11.97450 -11.79347 -11.49536 -11.48671 -11.09816 -10.87689 -10.76805 -10.50814 -10.03213 -9.01119 -8.25853 -6.28974 1.35855 1.39368 1.50045 1.69576 2.17209 2.36847 2.93870 3.07529 3.25226 3.86934 3.91175 3.98093 4.02981 4.08606 4.19185 4.22157 4.35729 4.46470 4.48275 4.57394 4.65252 4.69280 4.72658 4.77616 4.82567 4.94003 4.95117 4.95803 5.05913 5.08186 5.10392 5.26451 5.27397 5.37220 5.40009 5.46578 5.53891 5.57260 6.01174 6.26626 6.62964 6.67134 6.76532 7.33348 7.34886 8.90574 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.004473 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.008558 B = 6258.740272 C = 7713.818279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.121 4.121 4 C 0.120 3.880 5 N -0.723 5.723 6 C 0.515 3.485 7 O -0.561 6.561 8 C 0.044 3.956 9 N -0.533 5.533 10 C 0.177 3.823 11 C -0.514 4.514 12 H 0.037 0.963 13 C 0.011 3.989 14 N -0.947 5.947 15 Si 0.943 3.057 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.249 1.249 19 C 0.093 3.907 20 C -0.156 4.156 21 C -0.184 4.184 22 C -0.158 4.158 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.414 0.586 33 H 0.098 0.902 34 H 0.076 0.924 35 H 0.034 0.966 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.250 -10.896 -13.125 19.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.003 4.003 5 N -0.377 5.377 6 C 0.302 3.698 7 O -0.439 6.439 8 C -0.087 4.087 9 N -0.257 5.257 10 C 0.051 3.949 11 C -0.553 4.553 12 H 0.055 0.945 13 C -0.186 4.186 14 N -0.588 5.588 15 Si 0.766 3.234 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.173 1.173 19 C -0.034 4.034 20 C -0.175 4.175 21 C -0.221 4.221 22 C -0.196 4.196 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.250 0.750 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.513 -11.732 -12.619 19.682 hybrid contribution -0.019 1.513 -0.197 1.526 sum -9.533 -10.220 -12.816 18.962 Atomic orbital electron populations 1.21751 0.94688 1.02168 1.02175 1.21441 0.96727 0.95423 1.02437 1.21773 0.91774 0.98721 1.03628 1.21391 0.95467 0.82232 1.01207 1.45926 1.06315 1.09854 1.75625 1.20815 0.82647 0.91358 0.75024 1.90637 1.56262 1.47068 1.49919 1.21879 0.89987 0.93189 1.03670 1.61436 1.05578 1.23858 1.34805 1.19956 0.95591 0.84735 0.94649 1.21241 1.33882 1.02802 0.97347 0.94498 1.25788 0.97066 0.99396 0.96359 1.70042 1.48122 1.23222 1.17400 0.85777 0.79318 0.78995 0.79275 1.18822 1.21048 1.17269 1.21651 0.94445 0.97998 0.89339 1.22117 0.93249 1.05605 0.96551 1.23092 0.99493 0.96036 1.03436 1.22977 1.02965 0.94724 0.98889 0.92156 0.92595 0.92205 0.91535 0.92087 0.90797 0.90038 0.92257 0.93323 0.75011 0.88362 0.90653 0.94833 0.98967 0.92477 0.90563 0.95050 0.89872 0.88663 0.88778 0.87887 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.63 5.93 30.59 0.18 -1.44 16 3 C -0.12 -1.78 5.33 30.59 0.16 -1.61 16 4 C 0.12 2.64 5.67 86.38 0.49 3.13 16 5 N -0.72 -18.15 5.56 -463.06 -2.57 -20.73 16 6 C 0.51 17.90 7.34 87.66 0.64 18.55 16 7 O -0.56 -23.59 14.55 -3.03 -0.04 -23.63 16 8 C 0.04 1.63 5.29 85.56 0.45 2.08 16 9 N -0.53 -23.21 4.14 -905.36 -3.75 -26.96 16 10 C 0.18 8.54 3.63 85.56 0.31 8.85 16 11 C -0.51 -29.63 9.02 25.60 0.23 -29.40 16 12 H 0.04 2.38 7.48 -2.91 -0.02 2.36 16 13 C 0.01 0.66 5.47 84.66 0.46 1.12 16 14 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 15 Si 0.94 43.67 27.53 68.60 1.89 45.56 16 16 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 18 H -0.25 -10.84 6.45 99.48 0.64 -10.20 16 19 C 0.09 3.46 4.77 86.30 0.41 3.88 16 20 C -0.16 -5.58 5.20 -10.79 -0.06 -5.63 16 21 C -0.18 -5.46 10.18 30.59 0.31 -5.15 16 22 C -0.16 -4.30 10.25 30.59 0.31 -3.98 16 23 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.04 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.41 7.91 8.47 -92.71 -0.79 7.12 16 33 H 0.10 4.02 6.77 -2.38 -0.02 4.01 16 34 H 0.08 2.36 8.12 -2.39 -0.02 2.34 16 35 H 0.03 1.65 6.24 -2.39 -0.01 1.63 16 36 H -0.01 -0.33 7.69 -2.39 -0.02 -0.35 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.08 2.83 5.85 -2.39 -0.01 2.82 16 39 H 0.03 1.08 7.72 -2.39 -0.02 1.06 16 40 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.09 2.68 8.03 -2.39 -0.02 2.66 16 42 H 0.09 2.68 8.14 -2.38 -0.02 2.67 16 43 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -71.46 354.93 0.55 -70.91 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.10 Total: 24.06 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.63 Total: -10.58 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -6.02 Total: -106.31 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.04 Total: -23.63 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.89 Total: 45.56 kcal Total: -71.46 0.55 -70.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081062007.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.828 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds