Wall clock time and date at job start Mon Mar 30 2020 00:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47308 * 2 1 4 4 C 1.52990 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47461 * 54.99901 * 4 3 2 6 6 C 1.53002 * 109.47352 * 294.99925 * 4 3 2 7 7 C 1.50704 * 109.47186 * 174.99829 * 4 3 2 8 8 O 1.21278 * 120.00187 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99864 * 179.97438 * 7 4 3 10 10 C 1.46504 * 120.00006 * 179.97438 * 9 7 4 11 11 C 1.53040 * 109.46129 * 275.07576 * 10 9 7 12 12 C 1.53193 * 109.31327 * 178.61128 * 11 10 9 13 13 N 1.46932 * 108.77146 * 54.63360 * 12 11 10 14 14 C 1.36940 * 120.63034 * 126.41336 * 13 12 11 15 15 H 1.07998 * 119.99688 * 332.60963 * 14 13 12 16 16 C 1.38810 * 119.99994 * 152.60157 * 14 13 12 17 17 N 1.31618 * 120.00009 * 159.34391 * 16 14 13 18 18 Si 1.86803 * 120.00046 * 339.35025 * 16 14 13 19 19 H 1.48494 * 109.47328 * 92.93891 * 18 16 14 20 20 H 1.48504 * 109.46905 * 212.94212 * 18 16 14 21 21 H 1.48497 * 109.46935 * 332.93806 * 18 16 14 22 22 C 1.46924 * 118.73847 * 306.38878 * 13 12 11 23 23 C 1.53037 * 109.45918 * 155.00034 * 10 9 7 24 24 H 1.09005 * 109.46973 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46910 * 300.00042 * 1 2 3 26 26 H 1.08996 * 109.47093 * 60.00212 * 1 2 3 27 27 H 1.09003 * 109.47387 * 239.99737 * 2 1 3 28 28 H 1.08996 * 109.47093 * 119.99787 * 2 1 3 29 29 H 1.09003 * 109.47111 * 59.99569 * 3 2 1 30 30 H 1.09004 * 109.46636 * 300.00151 * 3 2 1 31 31 H 1.08998 * 109.46945 * 59.99825 * 6 4 3 32 32 H 1.09002 * 109.47192 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47250 * 300.00058 * 6 4 3 34 34 H 0.96996 * 120.00212 * 0.02562 * 9 7 4 35 35 H 1.09000 * 109.44292 * 35.03306 * 10 9 7 36 36 H 1.09003 * 109.49308 * 298.55876 * 11 10 9 37 37 H 1.09002 * 109.50265 * 58.65673 * 11 10 9 38 38 H 1.08996 * 109.58410 * 294.84556 * 12 11 10 39 39 H 1.08996 * 109.70075 * 174.48359 * 12 11 10 40 40 H 0.97006 * 120.00162 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.58542 * 293.82204 * 22 13 12 42 42 H 1.09004 * 109.70549 * 173.47001 * 22 13 12 43 43 H 1.08990 * 109.50022 * 301.34106 * 23 10 9 44 44 H 1.08994 * 109.49402 * 61.44222 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0724 2.8579 -0.1232 8 8 3.2843 3.7763 -0.2036 9 7 5.3975 3.1033 -0.1437 10 6 5.8859 4.4792 -0.2646 11 6 5.9369 4.8741 -1.7423 12 6 6.4149 6.3245 -1.8630 13 7 7.6966 6.4602 -1.1575 14 6 8.7909 6.9832 -1.7931 15 1 8.8867 6.8938 -2.8652 16 6 9.7771 7.6285 -1.0596 17 7 10.9852 7.7694 -1.5625 18 14 9.3895 8.2966 0.6412 19 1 9.7324 7.2761 1.6640 20 1 10.1855 9.5268 0.8830 21 1 7.9424 8.6183 0.7287 22 6 7.7816 6.0244 0.2431 23 6 7.2883 4.5774 0.3402 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7161 -0.1906 1.3979 32 1 5.1695 0.8327 1.3085 33 1 3.7158 1.4226 2.1499 34 1 6.0278 2.3688 -0.0790 35 1 5.2129 5.1512 0.2677 36 1 6.6287 4.2179 -2.2705 37 1 4.9421 4.7814 -2.1783 38 1 5.6782 6.9905 -1.4138 39 1 6.5473 6.5815 -2.9139 40 1 11.6743 8.2206 -1.0500 41 1 7.1564 6.6661 0.8640 42 1 8.8155 6.0816 0.5837 43 1 7.2554 4.2736 1.3864 44 1 7.9672 3.9241 -0.2077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110823791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:56 Heat of formation + Delta-G solvation = -41.917351 kcal Electronic energy + Delta-G solvation = -21163.392232 eV Core-core repulsion = 18115.278063 eV Total energy + Delta-G solvation = -3048.114169 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.05933 -37.83975 -36.07049 -34.55330 -32.60506 -31.80013 -30.42996 -29.89808 -26.85362 -25.34056 -23.85416 -22.88114 -21.87775 -21.02622 -19.95601 -19.38720 -17.20513 -16.58931 -16.11363 -15.77587 -15.14906 -14.73524 -14.19702 -14.13245 -14.07299 -13.79192 -13.47469 -13.04695 -12.91658 -12.64482 -12.49397 -12.40537 -12.11244 -11.99177 -11.78265 -11.47109 -11.17937 -11.04613 -10.96061 -10.82484 -10.74357 -10.55170 -10.27733 -10.14110 -9.84581 -9.55428 -9.44546 -8.77978 -8.63267 -6.99440 -5.95604 -3.31351 2.74909 3.28541 3.30634 3.48680 3.52255 4.51245 4.52310 4.56265 4.67783 4.92155 4.95314 5.00391 5.05909 5.16024 5.30924 5.34171 5.40934 5.41827 5.54872 5.58018 5.64264 5.67705 5.73811 5.82289 5.83174 5.91578 6.04280 6.08375 6.12420 6.17541 6.18883 6.34431 6.40923 6.57757 6.64694 6.65811 6.77733 6.92597 7.65621 7.95573 8.32388 8.35786 8.93373 9.71360 10.09170 11.20402 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045301 B = 0.003687 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.943402 B = 7591.600401 C = 7758.393543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.095 0.905 6 C -0.145 4.145 7 C 0.513 3.487 8 O -0.542 6.542 9 N -0.724 5.724 10 C 0.150 3.850 11 C -0.141 4.141 12 C 0.151 3.849 13 N -0.606 5.606 14 C -0.259 4.259 15 H 0.086 0.914 16 C 0.023 3.977 17 N -0.909 5.909 18 Si 0.881 3.119 19 H -0.289 1.289 20 H -0.303 1.303 21 H -0.270 1.270 22 C 0.129 3.871 23 C -0.140 4.140 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.396 0.604 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.025 0.975 39 H 0.066 0.934 40 H 0.262 0.738 41 H 0.027 0.973 42 H 0.077 0.923 43 H 0.058 0.942 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 -16.681 5.075 23.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.138 4.138 4 C -0.134 4.134 5 H 0.113 0.887 6 C -0.202 4.202 7 C 0.299 3.701 8 O -0.419 6.419 9 N -0.375 5.375 10 C 0.046 3.954 11 C -0.181 4.181 12 C 0.024 3.976 13 N -0.330 5.330 14 C -0.387 4.387 15 H 0.104 0.896 16 C -0.176 4.176 17 N -0.552 5.552 18 Si 0.712 3.288 19 H -0.216 1.216 20 H -0.231 1.231 21 H -0.195 1.195 22 C 0.003 3.997 23 C -0.180 4.180 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.230 0.770 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.687 -15.913 5.011 22.900 hybrid contribution 0.326 0.037 0.987 1.040 sum -15.362 -15.876 5.998 22.891 Atomic orbital electron populations 1.21764 0.95822 1.01392 1.02021 1.21604 0.95985 0.96768 1.01973 1.21423 0.92367 0.96471 1.03577 1.21353 0.97819 0.93838 1.00365 0.88714 1.21824 1.01172 1.01230 0.96011 1.20640 0.82457 0.91140 0.75825 1.90690 1.55338 1.46403 1.49514 1.46309 1.06816 1.09936 1.74402 1.20977 0.95440 0.81861 0.97104 1.22370 1.00518 0.99828 0.95355 1.20896 0.87210 0.92311 0.97161 1.44404 1.07720 1.71950 1.08936 1.18935 0.95899 1.30085 0.93811 0.89635 1.25285 0.95744 0.98726 0.97866 1.69838 1.01408 1.45131 1.38790 0.86970 0.78358 0.78260 0.85222 1.21640 1.23112 1.19485 1.21297 1.00107 0.91262 0.87028 1.22334 0.95116 1.00928 0.99606 0.92889 0.92719 0.92665 0.92066 0.91813 0.91356 0.91091 0.91353 0.92151 0.92098 0.77014 0.90039 0.91887 0.92326 0.95736 0.91599 0.92767 0.95528 0.90534 0.92310 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.92 5.69 -26.73 -0.15 -1.07 16 3 C -0.10 -0.97 4.03 -26.74 -0.11 -1.08 16 4 C -0.11 -1.07 2.72 -91.77 -0.25 -1.32 16 5 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 6 C -0.14 -1.11 8.84 37.16 0.33 -0.78 16 7 C 0.51 6.96 7.12 -10.98 -0.08 6.89 16 8 O -0.54 -9.58 15.58 5.56 0.09 -9.49 16 9 N -0.72 -9.44 4.97 -53.76 -0.27 -9.71 16 10 C 0.15 2.45 2.42 -67.89 -0.16 2.28 16 11 C -0.14 -2.45 5.65 -26.61 -0.15 -2.60 16 12 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 13 N -0.61 -14.46 2.77 -172.32 -0.48 -14.94 16 14 C -0.26 -7.24 10.04 -15.06 -0.15 -7.39 16 15 H 0.09 2.55 8.06 -52.49 -0.42 2.12 16 16 C 0.02 0.65 5.23 -17.43 -0.09 0.56 16 17 N -0.91 -27.81 13.97 55.49 0.78 -27.03 16 18 Si 0.88 22.38 24.35 -169.99 -4.14 18.24 16 19 H -0.29 -7.00 6.62 56.52 0.37 -6.62 16 20 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 21 H -0.27 -6.79 6.63 56.52 0.37 -6.41 16 22 C 0.13 2.80 4.20 -3.71 -0.02 2.78 16 23 C -0.14 -2.38 5.55 -26.61 -0.15 -2.53 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 6.56 -51.93 -0.34 0.07 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.79 7.96 -51.93 -0.41 0.38 16 31 H 0.07 0.42 6.56 -51.93 -0.34 0.07 16 32 H 0.06 0.42 7.56 -51.93 -0.39 0.02 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.40 4.10 8.02 -40.82 -0.33 3.77 16 35 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 42 H 0.08 1.80 4.50 -51.93 -0.23 1.56 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 337.73 15.07 5.09 5.09 Total: -1.00 -32.10 337.73 -7.47 -39.58 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.91 Total: 0.17 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -0.64 Total: -1.91 kcal Atomic # 7 Polarization: -51.71 SS G_CDS: 0.03 Total: -51.68 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.14 Total: 18.24 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.10 -7.47 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.339 kcal (2) G-P(sol) polarization free energy of solvation -32.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds