Wall clock time and date at job start Mon Mar 30 2020 00:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47308 * 2 1 4 4 C 1.52990 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47461 * 54.99901 * 4 3 2 6 6 C 1.53002 * 109.47352 * 294.99925 * 4 3 2 7 7 C 1.50704 * 109.47186 * 174.99829 * 4 3 2 8 8 O 1.21278 * 120.00187 * 0.02562 * 7 4 3 9 9 N 1.34778 * 119.99864 * 179.97438 * 7 4 3 10 10 C 1.46504 * 120.00006 * 179.97438 * 9 7 4 11 11 C 1.53040 * 109.46129 * 275.07576 * 10 9 7 12 12 C 1.53193 * 109.31327 * 178.61128 * 11 10 9 13 13 N 1.46932 * 108.77146 * 54.63360 * 12 11 10 14 14 C 1.36940 * 120.63034 * 126.41336 * 13 12 11 15 15 H 1.07998 * 119.99688 * 332.60963 * 14 13 12 16 16 C 1.38810 * 119.99994 * 152.60157 * 14 13 12 17 17 N 1.31618 * 120.00009 * 159.34391 * 16 14 13 18 18 Si 1.86803 * 120.00046 * 339.35025 * 16 14 13 19 19 H 1.48494 * 109.47328 * 92.93891 * 18 16 14 20 20 H 1.48504 * 109.46905 * 212.94212 * 18 16 14 21 21 H 1.48497 * 109.46935 * 332.93806 * 18 16 14 22 22 C 1.46924 * 118.73847 * 306.38878 * 13 12 11 23 23 C 1.53037 * 109.45918 * 155.00034 * 10 9 7 24 24 H 1.09005 * 109.46973 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46910 * 300.00042 * 1 2 3 26 26 H 1.08996 * 109.47093 * 60.00212 * 1 2 3 27 27 H 1.09003 * 109.47387 * 239.99737 * 2 1 3 28 28 H 1.08996 * 109.47093 * 119.99787 * 2 1 3 29 29 H 1.09003 * 109.47111 * 59.99569 * 3 2 1 30 30 H 1.09004 * 109.46636 * 300.00151 * 3 2 1 31 31 H 1.08998 * 109.46945 * 59.99825 * 6 4 3 32 32 H 1.09002 * 109.47192 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47250 * 300.00058 * 6 4 3 34 34 H 0.96996 * 120.00212 * 0.02562 * 9 7 4 35 35 H 1.09000 * 109.44292 * 35.03306 * 10 9 7 36 36 H 1.09003 * 109.49308 * 298.55876 * 11 10 9 37 37 H 1.09002 * 109.50265 * 58.65673 * 11 10 9 38 38 H 1.08996 * 109.58410 * 294.84556 * 12 11 10 39 39 H 1.08996 * 109.70075 * 174.48359 * 12 11 10 40 40 H 0.97006 * 120.00162 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.58542 * 293.82204 * 22 13 12 42 42 H 1.09004 * 109.70549 * 173.47001 * 22 13 12 43 43 H 1.08990 * 109.50022 * 301.34106 * 23 10 9 44 44 H 1.08994 * 109.49402 * 61.44222 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0724 2.8579 -0.1232 8 8 3.2843 3.7763 -0.2036 9 7 5.3975 3.1033 -0.1437 10 6 5.8859 4.4792 -0.2646 11 6 5.9369 4.8741 -1.7423 12 6 6.4149 6.3245 -1.8630 13 7 7.6966 6.4602 -1.1575 14 6 8.7909 6.9832 -1.7931 15 1 8.8867 6.8938 -2.8652 16 6 9.7771 7.6285 -1.0596 17 7 10.9852 7.7694 -1.5625 18 14 9.3895 8.2966 0.6412 19 1 9.7324 7.2761 1.6640 20 1 10.1855 9.5268 0.8830 21 1 7.9424 8.6183 0.7287 22 6 7.7816 6.0244 0.2431 23 6 7.2883 4.5774 0.3402 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9564 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 3.7161 -0.1906 1.3979 32 1 5.1695 0.8327 1.3085 33 1 3.7158 1.4226 2.1499 34 1 6.0278 2.3688 -0.0790 35 1 5.2129 5.1512 0.2677 36 1 6.6287 4.2179 -2.2705 37 1 4.9421 4.7814 -2.1783 38 1 5.6782 6.9905 -1.4138 39 1 6.5473 6.5815 -2.9139 40 1 11.6743 8.2206 -1.0500 41 1 7.1564 6.6661 0.8640 42 1 8.8155 6.0816 0.5837 43 1 7.2554 4.2736 1.3864 44 1 7.9672 3.9241 -0.2077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110823791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:55 Heat of formation + Delta-G solvation = -63.111333 kcal Electronic energy + Delta-G solvation = -21164.311272 eV Core-core repulsion = 18115.278063 eV Total energy + Delta-G solvation = -3049.033209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19039 -39.33010 -36.92528 -36.02947 -34.14884 -32.98095 -32.00414 -31.43271 -27.50033 -26.99007 -25.05737 -24.37474 -23.36332 -21.90908 -21.28364 -20.60855 -18.92111 -17.82617 -17.57713 -16.83491 -16.55501 -15.98272 -15.71348 -15.37155 -15.26007 -14.88958 -14.83115 -14.50241 -14.26572 -13.91739 -13.83188 -13.49700 -13.40986 -13.11953 -12.72453 -12.61591 -12.56503 -12.29721 -12.13353 -12.02760 -11.82773 -11.80125 -11.71405 -11.57343 -11.39655 -11.35401 -10.83058 -10.58307 -10.01278 -8.98595 -8.17617 -5.50169 1.28164 1.41776 1.50497 1.69566 2.21302 2.40201 3.04183 3.30141 3.68328 3.78826 3.84896 3.94173 4.01564 4.20865 4.29388 4.32638 4.39527 4.42680 4.46500 4.60963 4.64456 4.70462 4.82008 4.86103 4.90433 4.93053 4.99062 5.00011 5.04736 5.05448 5.14009 5.14998 5.26003 5.32468 5.39295 5.46156 5.51747 5.56437 5.85142 6.11366 6.63156 6.88872 7.32244 7.59517 8.00215 9.02188 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045301 B = 0.003687 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.943402 B = 7591.600401 C = 7758.393543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.104 4.104 5 H 0.118 0.882 6 C -0.142 4.142 7 C 0.510 3.490 8 O -0.588 6.588 9 N -0.712 5.712 10 C 0.159 3.841 11 C -0.127 4.127 12 C 0.147 3.853 13 N -0.619 5.619 14 C -0.250 4.250 15 H 0.053 0.947 16 C -0.032 4.032 17 N -0.955 5.955 18 Si 0.944 3.056 19 H -0.268 1.268 20 H -0.311 1.311 21 H -0.267 1.267 22 C 0.121 3.879 23 C -0.126 4.126 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.413 0.587 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.027 0.973 39 H 0.058 0.942 40 H 0.262 0.738 41 H 0.030 0.970 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.354 -19.224 6.713 26.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.137 4.137 4 C -0.125 4.125 5 H 0.135 0.865 6 C -0.199 4.199 7 C 0.298 3.702 8 O -0.468 6.468 9 N -0.363 5.363 10 C 0.054 3.946 11 C -0.167 4.167 12 C 0.021 3.979 13 N -0.344 5.344 14 C -0.379 4.379 15 H 0.071 0.929 16 C -0.227 4.227 17 N -0.601 5.601 18 Si 0.773 3.227 19 H -0.194 1.194 20 H -0.240 1.240 21 H -0.192 1.192 22 C -0.005 4.005 23 C -0.166 4.166 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.068 0.932 34 H 0.250 0.750 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.771 -18.515 6.669 25.857 hybrid contribution 0.585 0.819 0.386 1.078 sum -16.186 -17.696 7.056 24.999 Atomic orbital electron populations 1.21789 0.95879 1.02072 1.01520 1.21575 0.95945 0.95058 1.03123 1.21396 0.92686 0.97813 1.01811 1.21385 0.97445 0.91182 1.02461 0.86455 1.21843 1.01946 1.02004 0.94131 1.21421 0.81951 0.92452 0.74384 1.90678 1.56415 1.48196 1.51468 1.46081 1.07240 1.09021 1.74001 1.20642 0.94812 0.83499 0.95696 1.22188 1.00436 0.97528 0.96582 1.21002 0.85883 0.94513 0.96472 1.44510 1.07707 1.72186 1.09969 1.18867 0.96893 1.29408 0.92771 0.92909 1.25880 0.95482 0.99479 1.01900 1.69958 1.02467 1.46903 1.40792 0.85950 0.77870 0.77453 0.81408 1.19381 1.23987 1.19166 1.21372 0.99389 0.94280 0.85414 1.22146 0.95105 0.97610 1.01734 0.91585 0.93121 0.93375 0.91061 0.90373 0.92919 0.93213 0.89164 0.90923 0.93196 0.74982 0.91739 0.91779 0.91906 0.95527 0.92320 0.92857 0.95229 0.92284 0.89227 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.91 71.98 0.71 -1.20 16 2 C -0.12 -1.43 5.69 30.60 0.17 -1.25 16 3 C -0.10 -1.75 4.03 30.59 0.12 -1.63 16 4 C -0.10 -1.67 2.72 -11.54 -0.03 -1.70 16 5 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 6 C -0.14 -1.64 8.84 71.98 0.64 -1.00 16 7 C 0.51 12.78 7.12 87.66 0.62 13.41 16 8 O -0.59 -20.32 15.58 -3.02 -0.05 -20.37 16 9 N -0.71 -16.52 4.97 -442.40 -2.20 -18.72 16 10 C 0.16 4.83 2.42 45.02 0.11 4.94 16 11 C -0.13 -4.27 5.65 30.67 0.17 -4.10 16 12 C 0.15 5.95 6.52 86.36 0.56 6.52 16 13 N -0.62 -29.32 2.77 -699.08 -1.94 -31.26 16 14 C -0.25 -14.23 10.04 84.03 0.84 -13.39 16 15 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 16 C -0.03 -1.90 5.23 84.86 0.44 -1.45 16 17 N -0.96 -59.83 13.97 21.65 0.30 -59.53 16 18 Si 0.94 46.46 24.35 68.60 1.67 48.13 16 19 H -0.27 -12.14 6.62 99.48 0.66 -11.48 16 20 H -0.31 -15.60 7.11 99.48 0.71 -14.89 16 21 H -0.27 -12.84 6.63 99.48 0.66 -12.18 16 22 C 0.12 5.01 4.20 86.36 0.36 5.38 16 23 C -0.13 -3.94 5.55 30.67 0.17 -3.77 16 24 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.73 6.56 -2.39 -0.02 0.71 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.08 7.96 -2.38 -0.02 1.06 16 31 H 0.09 0.69 6.56 -2.39 -0.02 0.67 16 32 H 0.07 0.68 7.56 -2.39 -0.02 0.66 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.41 6.93 8.02 -92.71 -0.74 6.18 16 35 H 0.06 2.25 7.58 -2.39 -0.02 2.23 16 36 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.03 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 40 H 0.26 15.59 8.31 -92.70 -0.77 14.82 16 41 H 0.03 1.22 7.07 -2.38 -0.02 1.20 16 42 H 0.06 2.66 4.50 -2.39 -0.01 2.65 16 43 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -71.00 337.73 2.82 -68.19 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.12 Total: 12.81 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 4.91 Total: 0.75 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -3.83 Total: -109.51 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.67 Total: 48.13 kcal Total: -71.00 2.82 -68.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110823791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.075 kcal (2) G-P(sol) polarization free energy of solvation -71.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds