Wall clock time and date at job start Mon Mar 30 2020 00:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47174 * 2 1 4 4 C 1.52998 * 109.46915 * 120.00413 * 2 1 3 5 5 H 1.09004 * 108.82977 * 305.01949 * 4 2 1 6 6 C 1.54168 * 108.85399 * 186.61802 * 4 2 1 7 7 C 1.53820 * 111.96932 * 197.68027 * 6 4 2 8 8 C 1.50816 * 111.62614 * 319.03675 * 7 6 4 9 9 N 1.47638 * 108.04931 * 95.05771 * 8 7 6 10 10 C 1.46902 * 110.99658 * 150.35371 * 9 8 7 11 11 C 1.50704 * 109.47013 * 298.88853 * 10 9 8 12 12 O 1.21293 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99592 * 180.02562 * 11 10 9 14 14 C 1.37100 * 119.99705 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00022 * 359.97438 * 14 13 11 16 16 C 1.38946 * 120.00095 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99953 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47036 * 179.97438 * 18 16 14 20 20 H 1.48489 * 109.47342 * 299.99762 * 18 16 14 21 21 H 1.48500 * 109.47151 * 59.99900 * 18 16 14 22 22 C 1.39779 * 114.75561 * 277.20241 * 9 8 7 23 23 C 1.50751 * 108.85985 * 63.52952 * 4 2 1 24 24 H 1.09000 * 109.47373 * 54.10826 * 1 2 3 25 25 H 1.08995 * 109.47315 * 174.11337 * 1 2 3 26 26 H 1.09003 * 109.46745 * 294.11185 * 1 2 3 27 27 H 1.09003 * 109.46609 * 239.99861 * 2 1 3 28 28 H 1.09005 * 109.47338 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47561 * 300.00184 * 3 2 1 30 30 H 1.09003 * 109.47466 * 60.00386 * 3 2 1 31 31 H 1.09000 * 108.97981 * 318.32088 * 6 4 2 32 32 H 1.09001 * 108.98284 * 77.11796 * 6 4 2 33 33 H 1.08997 * 109.05240 * 79.59419 * 7 6 4 34 34 H 1.09001 * 109.05012 * 198.56051 * 7 6 4 35 35 H 1.09004 * 109.74136 * 335.42143 * 8 7 6 36 36 H 1.08995 * 109.75339 * 214.70032 * 8 7 6 37 37 H 1.09003 * 109.46778 * 178.89477 * 10 9 8 38 38 H 1.08993 * 109.47455 * 58.89038 * 10 9 8 39 39 H 0.97000 * 120.00642 * 0.02562 * 13 11 10 40 40 H 0.96992 * 120.00044 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.01720 * 182.86765 * 22 9 8 42 42 H 1.09002 * 109.02390 * 301.68261 * 22 9 8 43 43 H 1.09000 * 109.54689 * 93.95867 * 23 4 2 44 44 H 1.08997 * 109.61644 * 333.73177 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5990 -0.2542 2.1298 6 6 3.5724 -0.5691 1.3217 7 6 4.2088 -1.5995 2.2700 8 6 3.3892 -1.7828 3.5226 9 7 2.4980 -2.9424 3.3206 10 6 2.2108 -3.6138 4.5953 11 6 3.4963 -4.1199 5.1973 12 8 4.5482 -3.9394 4.6210 13 7 3.4769 -4.7739 6.3756 14 6 4.6465 -5.2338 6.9236 15 1 5.5832 -5.0723 6.4109 16 6 4.6265 -5.9085 8.1381 17 7 3.4867 -6.1054 8.7617 18 14 6.2200 -6.5357 8.8843 19 1 5.9296 -7.2150 10.1726 20 1 6.8593 -7.4970 7.9504 21 1 7.1380 -5.3932 9.1237 22 6 1.3183 -2.6600 2.6262 23 6 1.6029 -2.1630 1.1920 24 1 -0.3634 0.6025 -0.8325 25 1 -0.3634 -1.0222 -0.1054 26 1 -0.3633 0.4198 0.9380 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.9894 -0.7010 0.3233 32 1 3.8127 0.4332 1.6764 33 1 4.2886 -2.5563 1.7539 34 1 5.2072 -1.2601 2.5459 35 1 2.7938 -0.8885 3.7072 36 1 4.0485 -1.9683 4.3704 37 1 1.5367 -4.4524 4.4203 38 1 1.7420 -2.9076 5.2804 39 1 2.6356 -4.9192 6.8359 40 1 3.4728 -6.5760 9.6097 41 1 0.7112 -3.5640 2.5750 42 1 0.7640 -1.8916 3.1651 43 1 2.3940 -2.7665 0.7471 44 1 0.6978 -2.2473 0.5905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114729664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:28 Heat of formation + Delta-G solvation = -49.029377 kcal Electronic energy + Delta-G solvation = -21398.069799 eV Core-core repulsion = 18349.647230 eV Total energy + Delta-G solvation = -3048.422569 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.79606 -38.06271 -36.18675 -33.84077 -32.92193 -31.24617 -31.14164 -28.06803 -27.36292 -25.11403 -24.84467 -23.65156 -20.83145 -20.59841 -19.19798 -18.86087 -17.81793 -16.11168 -15.68308 -15.30374 -14.82757 -14.74953 -14.38989 -14.22957 -13.77984 -13.68075 -13.55642 -13.03547 -12.89202 -12.38218 -12.09690 -11.93404 -11.85496 -11.71028 -11.48453 -11.39661 -11.31849 -11.07384 -10.88813 -10.59116 -10.42597 -10.38309 -10.18370 -10.13542 -10.01011 -9.91818 -9.39912 -8.29438 -7.91357 -7.66182 -6.38106 -3.78697 3.22283 3.27601 3.32105 3.96142 4.12475 4.32156 4.60424 4.75252 4.79623 5.04430 5.12836 5.24730 5.29496 5.37749 5.40887 5.44948 5.49466 5.56015 5.63203 5.71820 5.77367 5.79834 5.83965 5.93222 5.95812 5.99786 6.01978 6.09150 6.12363 6.23285 6.33175 6.34989 6.37048 6.40189 6.52639 6.75326 6.82941 7.50564 7.58284 7.89480 8.11230 8.66412 9.22004 9.59304 10.11381 10.79767 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046488 B = 0.003631 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.166796 B = 7709.396427 C = 8087.144462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.081 4.081 5 H 0.063 0.937 6 C -0.112 4.112 7 C -0.109 4.109 8 C 0.072 3.928 9 N -0.535 5.535 10 C 0.051 3.949 11 C 0.443 3.557 12 O -0.575 6.575 13 N -0.566 5.566 14 C -0.298 4.298 15 H 0.102 0.898 16 C 0.022 3.978 17 N -0.903 5.903 18 Si 0.930 3.070 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.274 1.274 22 C 0.079 3.921 23 C -0.115 4.115 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.065 0.935 42 H 0.012 0.988 43 H 0.074 0.926 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.975 11.081 -13.672 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.100 4.100 5 H 0.081 0.919 6 C -0.149 4.149 7 C -0.147 4.147 8 C -0.054 4.054 9 N -0.259 5.259 10 C -0.080 4.080 11 C 0.229 3.771 12 O -0.459 6.459 13 N -0.203 5.203 14 C -0.428 4.428 15 H 0.120 0.880 16 C -0.180 4.180 17 N -0.545 5.545 18 Si 0.757 3.243 19 H -0.210 1.210 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.051 4.051 23 C -0.153 4.153 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.042 0.958 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.030 0.970 43 H 0.093 0.907 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.071 10.818 -14.156 18.822 hybrid contribution -0.311 0.070 1.257 1.296 sum -6.381 10.888 -12.899 18.046 Atomic orbital electron populations 1.21916 0.95573 1.01661 1.01423 1.21238 0.95420 0.96058 0.98497 1.21892 1.01332 0.96129 1.01216 1.21098 0.95798 0.95803 0.97268 0.91880 1.22050 0.94334 0.99035 0.99491 1.21291 0.98064 0.99516 0.95816 1.21840 0.95004 0.88982 0.99606 1.58322 1.18002 1.29519 1.20100 1.21798 0.97238 0.98577 0.90387 1.19795 0.90121 0.84178 0.83020 1.90500 1.32241 1.61001 1.62153 1.41878 1.10162 1.49734 1.18517 1.19644 0.87774 1.32322 1.03020 0.88000 1.25246 0.98456 0.97566 0.96698 1.69605 1.25272 1.42421 1.17198 0.85933 0.81327 0.79022 0.78016 1.21029 1.19917 1.19960 1.20917 0.90909 0.99088 0.94169 1.21619 1.01615 0.95693 0.96351 0.93110 0.92346 0.92854 0.91406 0.92340 0.93253 0.92928 0.92594 0.92764 0.90553 0.92390 0.95758 0.88858 0.89642 0.93755 0.77540 0.91884 0.91664 0.97045 0.90723 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.85 37.16 0.33 -0.93 16 2 C -0.09 -0.87 2.36 -90.62 -0.21 -1.08 16 3 C -0.15 -1.29 8.71 37.15 0.32 -0.96 16 4 C -0.08 -0.90 1.31 -91.14 -0.12 -1.02 16 5 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 6 C -0.11 -1.33 4.11 -25.69 -0.11 -1.44 16 7 C -0.11 -1.66 5.41 -27.40 -0.15 -1.81 16 8 C 0.07 1.22 4.62 -4.51 -0.02 1.20 16 9 N -0.54 -9.12 3.76 -241.44 -0.91 -10.02 16 10 C 0.05 0.93 5.45 -4.97 -0.03 0.91 16 11 C 0.44 10.52 7.20 -10.99 -0.08 10.44 16 12 O -0.57 -15.34 13.87 5.55 0.08 -15.26 16 13 N -0.57 -14.45 5.29 -10.96 -0.06 -14.51 16 14 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 15 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 16 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 17 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 18 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 22 C 0.08 1.09 4.93 -6.74 -0.03 1.05 16 23 C -0.12 -1.36 5.02 -27.11 -0.14 -1.50 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.48 6.34 -51.93 -0.33 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.51 6.67 -51.93 -0.35 0.16 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.63 7.98 -51.93 -0.41 0.21 16 32 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 33 H 0.08 1.30 7.26 -51.93 -0.38 0.92 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.02 0.38 6.66 -51.93 -0.35 0.03 16 36 H 0.09 1.91 5.61 -51.93 -0.29 1.62 16 37 H 0.09 1.43 7.83 -51.93 -0.41 1.03 16 38 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 0.85 7.80 -51.93 -0.40 0.45 16 42 H 0.01 0.16 7.54 -51.93 -0.39 -0.23 16 43 H 0.07 0.99 7.11 -51.93 -0.37 0.62 16 44 H 0.07 0.70 5.73 -51.93 -0.30 0.40 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -29.58 330.81 -8.16 -37.75 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -7.49 Total: 8.08 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.47 Total: -3.14 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.24 Total: -48.60 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: 0.08 Total: -15.26 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.58 -8.16 -37.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114729664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.281 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds