Wall clock time and date at job start Mon Mar 30 2020 00:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52990 * 109.47174 * 2 1 4 4 C 1.52998 * 109.46915 * 120.00413 * 2 1 3 5 5 H 1.09004 * 108.82977 * 305.01949 * 4 2 1 6 6 C 1.54168 * 108.85399 * 186.61802 * 4 2 1 7 7 C 1.53820 * 111.96932 * 197.68027 * 6 4 2 8 8 C 1.50816 * 111.62614 * 319.03675 * 7 6 4 9 9 N 1.47638 * 108.04931 * 95.05771 * 8 7 6 10 10 C 1.46902 * 110.99658 * 150.35371 * 9 8 7 11 11 C 1.50704 * 109.47013 * 298.88853 * 10 9 8 12 12 O 1.21293 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99592 * 180.02562 * 11 10 9 14 14 C 1.37100 * 119.99705 * 180.02562 * 13 11 10 15 15 H 1.08001 * 120.00022 * 359.97438 * 14 13 11 16 16 C 1.38946 * 120.00095 * 180.02562 * 14 13 11 17 17 N 1.31417 * 120.00139 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99953 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47036 * 179.97438 * 18 16 14 20 20 H 1.48489 * 109.47342 * 299.99762 * 18 16 14 21 21 H 1.48500 * 109.47151 * 59.99900 * 18 16 14 22 22 C 1.39779 * 114.75561 * 277.20241 * 9 8 7 23 23 C 1.50751 * 108.85985 * 63.52952 * 4 2 1 24 24 H 1.09000 * 109.47373 * 54.10826 * 1 2 3 25 25 H 1.08995 * 109.47315 * 174.11337 * 1 2 3 26 26 H 1.09003 * 109.46745 * 294.11185 * 1 2 3 27 27 H 1.09003 * 109.46609 * 239.99861 * 2 1 3 28 28 H 1.09005 * 109.47338 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47561 * 300.00184 * 3 2 1 30 30 H 1.09003 * 109.47466 * 60.00386 * 3 2 1 31 31 H 1.09000 * 108.97981 * 318.32088 * 6 4 2 32 32 H 1.09001 * 108.98284 * 77.11796 * 6 4 2 33 33 H 1.08997 * 109.05240 * 79.59419 * 7 6 4 34 34 H 1.09001 * 109.05012 * 198.56051 * 7 6 4 35 35 H 1.09004 * 109.74136 * 335.42143 * 8 7 6 36 36 H 1.08995 * 109.75339 * 214.70032 * 8 7 6 37 37 H 1.09003 * 109.46778 * 178.89477 * 10 9 8 38 38 H 1.08993 * 109.47455 * 58.89038 * 10 9 8 39 39 H 0.97000 * 120.00642 * 0.02562 * 13 11 10 40 40 H 0.96992 * 120.00044 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.01720 * 182.86765 * 22 9 8 42 42 H 1.09002 * 109.02390 * 301.68261 * 22 9 8 43 43 H 1.09000 * 109.54689 * 93.95867 * 23 4 2 44 44 H 1.08997 * 109.61644 * 333.73177 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5990 -0.2542 2.1298 6 6 3.5724 -0.5691 1.3217 7 6 4.2088 -1.5995 2.2700 8 6 3.3892 -1.7828 3.5226 9 7 2.4980 -2.9424 3.3206 10 6 2.2108 -3.6138 4.5953 11 6 3.4963 -4.1199 5.1973 12 8 4.5482 -3.9394 4.6210 13 7 3.4769 -4.7739 6.3756 14 6 4.6465 -5.2338 6.9236 15 1 5.5832 -5.0723 6.4109 16 6 4.6265 -5.9085 8.1381 17 7 3.4867 -6.1054 8.7617 18 14 6.2200 -6.5357 8.8843 19 1 5.9296 -7.2150 10.1726 20 1 6.8593 -7.4970 7.9504 21 1 7.1380 -5.3932 9.1237 22 6 1.3183 -2.6600 2.6262 23 6 1.6029 -2.1630 1.1920 24 1 -0.3634 0.6025 -0.8325 25 1 -0.3634 -1.0222 -0.1054 26 1 -0.3633 0.4198 0.9380 27 1 1.8933 -0.5139 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 3.9894 -0.7010 0.3233 32 1 3.8127 0.4332 1.6764 33 1 4.2886 -2.5563 1.7539 34 1 5.2072 -1.2601 2.5459 35 1 2.7938 -0.8885 3.7072 36 1 4.0485 -1.9683 4.3704 37 1 1.5367 -4.4524 4.4203 38 1 1.7420 -2.9076 5.2804 39 1 2.6356 -4.9192 6.8359 40 1 3.4728 -6.5760 9.6097 41 1 0.7112 -3.5640 2.5750 42 1 0.7640 -1.8916 3.1651 43 1 2.3940 -2.7665 0.7471 44 1 0.6978 -2.2473 0.5905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114729664.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:28 Heat of formation + Delta-G solvation = -67.387607 kcal Electronic energy + Delta-G solvation = -21398.865872 eV Core-core repulsion = 18349.647230 eV Total energy + Delta-G solvation = -3049.218642 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.07719 -39.68740 -37.38260 -35.85362 -34.06818 -33.21283 -32.27050 -29.37230 -28.28891 -26.75445 -25.92680 -25.11799 -21.81599 -21.68055 -21.00548 -19.93288 -19.82011 -17.74869 -17.02469 -16.62564 -16.55433 -15.86171 -15.73401 -15.50849 -15.40936 -15.02218 -14.73486 -14.23737 -14.01853 -13.62769 -13.46146 -13.26805 -13.02558 -12.94934 -12.82138 -12.60198 -12.41919 -12.41619 -12.21296 -12.12133 -12.02209 -11.68945 -11.53838 -11.36183 -11.06807 -11.00110 -10.88026 -10.19868 -9.96643 -9.01827 -8.44968 -5.93412 1.40058 1.41402 1.52418 2.08210 2.29699 2.87032 3.22001 3.38936 3.74452 3.90203 3.91911 4.16839 4.26584 4.29406 4.34842 4.39262 4.47172 4.53152 4.57190 4.65846 4.68112 4.76837 4.83517 4.86570 4.92016 4.98888 5.06008 5.11644 5.15079 5.20576 5.29229 5.40353 5.41551 5.42195 5.48260 5.51036 5.62279 5.72231 5.96049 6.19176 6.61611 6.67579 7.14804 7.59010 8.14947 8.72448 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046488 B = 0.003631 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.166796 B = 7709.396427 C = 8087.144462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.078 4.078 5 H 0.057 0.943 6 C -0.103 4.103 7 C -0.104 4.104 8 C 0.077 3.923 9 N -0.547 5.547 10 C 0.061 3.939 11 C 0.441 3.559 12 O -0.609 6.609 13 N -0.576 5.576 14 C -0.332 4.332 15 H 0.079 0.921 16 C -0.014 4.014 17 N -0.922 5.922 18 Si 0.992 3.008 19 H -0.271 1.271 20 H -0.272 1.272 21 H -0.272 1.272 22 C 0.073 3.927 23 C -0.109 4.109 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.040 0.960 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.062 0.938 39 H 0.395 0.605 40 H 0.277 0.723 41 H 0.075 0.925 42 H 0.021 0.979 43 H 0.059 0.941 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.159 11.742 -14.520 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.096 4.096 5 H 0.075 0.925 6 C -0.141 4.141 7 C -0.142 4.142 8 C -0.049 4.049 9 N -0.272 5.272 10 C -0.069 4.069 11 C 0.228 3.772 12 O -0.495 6.495 13 N -0.214 5.214 14 C -0.461 4.461 15 H 0.097 0.903 16 C -0.213 4.213 17 N -0.564 5.564 18 Si 0.816 3.184 19 H -0.195 1.195 20 H -0.197 1.197 21 H -0.197 1.197 22 C -0.056 4.056 23 C -0.146 4.146 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.080 0.920 39 H 0.229 0.771 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.039 0.961 43 H 0.078 0.922 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.284 11.488 -15.013 20.259 hybrid contribution 0.048 -0.114 1.486 1.491 sum -7.236 11.374 -13.527 19.098 Atomic orbital electron populations 1.21902 0.94707 1.02058 1.01754 1.21194 0.96092 0.96151 0.97349 1.21887 1.01200 0.95764 1.01684 1.21058 0.94843 0.95591 0.98156 0.92473 1.21979 0.95053 0.98106 0.98924 1.21217 0.97822 0.99538 0.95625 1.21700 0.94808 0.89616 0.98813 1.58350 1.19629 1.29696 1.19522 1.21702 0.94237 0.99752 0.91244 1.20768 0.91674 0.82607 0.82104 1.90478 1.34286 1.61830 1.62858 1.41941 1.09639 1.50499 1.19304 1.19621 0.87994 1.34352 1.04143 0.90317 1.26024 1.01756 0.97078 0.96466 1.69670 1.26753 1.42437 1.17502 0.85004 0.77460 0.78430 0.77536 1.19513 1.19745 1.19720 1.21066 0.89635 1.00003 0.94853 1.21594 1.02147 0.95691 0.95188 0.92086 0.92059 0.93109 0.91149 0.92574 0.92165 0.93124 0.91623 0.91879 0.92695 0.93333 0.94222 0.92970 0.87501 0.92028 0.77141 0.91359 0.90642 0.96105 0.92244 0.89112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.85 71.98 0.64 -1.41 16 2 C -0.09 -1.42 2.36 -10.80 -0.03 -1.44 16 3 C -0.15 -2.19 8.71 71.98 0.63 -1.56 16 4 C -0.08 -1.57 1.31 -11.13 -0.01 -1.58 16 5 H 0.06 1.24 6.57 -2.38 -0.02 1.23 16 6 C -0.10 -2.33 4.11 31.27 0.13 -2.20 16 7 C -0.10 -3.20 5.41 30.16 0.16 -3.04 16 8 C 0.08 2.64 4.62 85.45 0.39 3.04 16 9 N -0.55 -18.32 3.76 -917.77 -3.45 -21.77 16 10 C 0.06 2.21 5.45 85.56 0.47 2.68 16 11 C 0.44 21.41 7.20 87.66 0.63 22.04 16 12 O -0.61 -33.77 13.87 -3.07 -0.04 -33.81 16 13 N -0.58 -30.11 5.29 -306.99 -1.62 -31.73 16 14 C -0.33 -19.08 9.68 84.04 0.81 -18.26 16 15 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 16 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 17 N -0.92 -50.49 13.05 21.66 0.28 -50.21 16 18 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 19 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 22 C 0.07 1.87 4.93 88.07 0.43 2.30 16 23 C -0.11 -2.34 5.02 30.35 0.15 -2.19 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.81 6.34 -2.39 -0.02 0.80 16 26 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 0.85 6.67 -2.38 -0.02 0.84 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 1.37 7.98 -2.39 -0.02 1.35 16 32 H 0.06 1.33 7.36 -2.39 -0.02 1.31 16 33 H 0.05 1.91 7.26 -2.39 -0.02 1.90 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.04 1.21 6.66 -2.39 -0.02 1.20 16 36 H 0.05 2.22 5.61 -2.39 -0.01 2.21 16 37 H 0.11 3.42 7.83 -2.39 -0.02 3.40 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.39 19.68 7.90 -92.71 -0.73 18.94 16 40 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.08 1.78 7.80 -2.38 -0.02 1.76 16 42 H 0.02 0.51 7.54 -2.39 -0.02 0.49 16 43 H 0.06 1.49 7.11 -2.39 -0.02 1.48 16 44 H 0.09 1.57 5.73 -2.39 -0.01 1.56 16 Total: -1.00 -64.59 330.81 2.32 -62.28 By element: Atomic # 1 Polarization: 31.38 SS G_CDS: 0.25 Total: 31.63 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: 4.88 Total: -1.91 kcal Atomic # 7 Polarization: -98.92 SS G_CDS: -4.79 Total: -103.71 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -0.04 Total: -33.81 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -64.59 2.32 -62.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114729664.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.109 kcal (2) G-P(sol) polarization free energy of solvation -64.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds