Wall clock time and date at job start Mon Mar 30 2020 00:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 C 1.52995 * 109.47173 * 120.00349 * 2 1 3 5 5 H 1.08999 * 108.73785 * 305.19053 * 4 2 1 6 6 C 1.50467 * 108.77285 * 63.49300 * 4 2 1 7 7 C 1.54499 * 108.85381 * 212.95426 * 6 4 2 8 8 C 1.45866 * 111.59479 * 282.80339 * 7 6 4 9 9 N 1.47803 * 112.91293 * 61.33144 * 8 7 6 10 10 C 1.46902 * 110.99944 * 153.87092 * 9 8 7 11 11 C 1.50697 * 109.47108 * 66.04389 * 10 9 8 12 12 O 1.21288 * 120.00087 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99429 * 179.72790 * 11 10 9 14 14 C 1.37102 * 119.99644 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99926 * 359.97438 * 14 13 11 16 16 C 1.38947 * 119.99788 * 179.97438 * 14 13 11 17 17 N 1.31405 * 120.00400 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99817 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46990 * 90.00242 * 18 16 14 20 20 H 1.48501 * 109.47238 * 209.99974 * 18 16 14 21 21 H 1.48497 * 109.47288 * 330.00244 * 18 16 14 22 22 C 1.44274 * 109.46039 * 276.74037 * 9 8 7 23 23 C 1.54068 * 111.98492 * 96.44034 * 22 9 8 24 24 H 1.09000 * 109.47027 * 294.07830 * 1 2 3 25 25 H 1.09003 * 109.47412 * 54.07624 * 1 2 3 26 26 H 1.08996 * 109.47616 * 174.07941 * 1 2 3 27 27 H 1.09001 * 109.47007 * 240.00286 * 2 1 3 28 28 H 1.09001 * 109.46831 * 60.00178 * 3 2 1 29 29 H 1.09000 * 109.46907 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47191 * 300.00028 * 3 2 1 31 31 H 1.09005 * 109.57469 * 93.14199 * 6 4 2 32 32 H 1.09002 * 109.67688 * 332.83057 * 6 4 2 33 33 H 1.09009 * 109.05706 * 162.26459 * 7 6 4 34 34 H 1.08996 * 109.05896 * 43.35042 * 7 6 4 35 35 H 1.08994 * 108.79585 * 300.44783 * 8 7 6 36 36 H 1.08999 * 108.70837 * 182.15113 * 8 7 6 37 37 H 1.08993 * 109.46783 * 306.03924 * 10 9 8 38 38 H 1.09006 * 109.46874 * 186.04497 * 10 9 8 39 39 H 0.96997 * 120.00499 * 359.97438 * 13 11 10 40 40 H 0.96996 * 120.00549 * 179.97438 * 17 16 14 41 41 H 1.09004 * 108.97645 * 217.08486 * 22 9 8 42 42 H 1.09004 * 108.98083 * 335.79313 * 22 9 8 43 43 H 1.09001 * 108.91806 * 198.18968 * 23 22 9 44 44 H 1.08996 * 108.84827 * 79.58205 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.5958 -0.2550 2.1286 6 6 1.6019 -2.1596 1.1905 7 6 1.3388 -2.6604 2.6283 8 6 2.5832 -2.9519 3.3313 9 7 3.4525 -1.7657 3.4785 10 6 4.3297 -1.8979 4.6494 11 6 5.3007 -3.0283 4.4246 12 8 5.2657 -3.6611 3.3905 13 7 6.2118 -3.3320 5.3702 14 6 7.0948 -4.3607 5.1659 15 1 7.0600 -4.9279 4.2475 16 6 8.0345 -4.6735 6.1405 17 7 8.0765 -3.9838 7.2581 18 14 9.2372 -6.0757 5.8624 19 1 10.4611 -5.5544 5.2025 20 1 9.5994 -6.6834 7.1681 21 1 8.6071 -7.1037 4.9957 22 6 4.2236 -1.5822 2.2729 23 6 3.5727 -0.5595 1.3221 24 1 -0.3633 0.4193 0.9383 25 1 -0.3634 0.6029 -0.8322 26 1 -0.3634 -1.0221 -0.1060 27 1 1.8932 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 2.3862 -2.7618 0.7318 32 1 0.6878 -2.2412 0.6024 33 1 0.7342 -3.5664 2.5846 34 1 0.7910 -1.8946 3.1772 35 1 3.1266 -3.7192 2.7799 36 1 2.3430 -3.3363 4.3225 37 1 3.7270 -2.1069 5.5331 38 1 4.8811 -0.9692 4.7970 39 1 6.2428 -2.8229 6.1952 40 1 8.7322 -4.2024 7.9386 41 1 5.2211 -1.2332 2.5399 42 1 4.3104 -2.5393 1.7585 43 1 3.9897 -0.6902 0.3235 44 1 3.8055 0.4457 1.6732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114729666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:31 Heat of formation + Delta-G solvation = -53.639795 kcal Electronic energy + Delta-G solvation = -21606.674782 eV Core-core repulsion = 18558.052290 eV Total energy + Delta-G solvation = -3048.622492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.74106 -38.06703 -35.96170 -33.91589 -32.75843 -31.40754 -31.15305 -28.10703 -27.22823 -25.23301 -24.35892 -23.70804 -20.76682 -20.40310 -19.45789 -18.76458 -17.78192 -15.99032 -15.67968 -15.34585 -14.77464 -14.65913 -14.21954 -14.20482 -13.84721 -13.57845 -13.37873 -13.00044 -12.69556 -12.40473 -12.28737 -11.95747 -11.60472 -11.53192 -11.46375 -11.20621 -11.12023 -11.08768 -10.75788 -10.43962 -10.37622 -10.32726 -10.24705 -10.09317 -9.94111 -9.72957 -9.49462 -9.05249 -7.99450 -7.48198 -6.44426 -3.85742 3.14766 3.23945 3.29627 3.86586 4.15203 4.39157 4.74344 4.89652 4.95875 5.04036 5.16964 5.22609 5.38407 5.44369 5.57544 5.58966 5.61760 5.68273 5.77628 5.81567 5.85906 5.90038 5.92780 6.05607 6.07317 6.16028 6.21491 6.22947 6.25619 6.34836 6.37462 6.42359 6.53907 6.59819 6.63299 6.77741 6.80495 7.48893 7.51842 7.63234 8.02335 8.57525 9.14246 9.51148 10.01848 10.72376 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041238 B = 0.003815 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.817401 B = 7337.970660 C = 7445.574858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.147 4.147 4 C -0.068 4.068 5 H 0.072 0.928 6 C -0.115 4.115 7 C -0.109 4.109 8 C 0.048 3.952 9 N -0.503 5.503 10 C 0.042 3.958 11 C 0.407 3.593 12 O -0.595 6.595 13 N -0.559 5.559 14 C -0.301 4.301 15 H 0.102 0.898 16 C 0.023 3.977 17 N -0.900 5.900 18 Si 0.929 3.071 19 H -0.278 1.278 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.060 3.940 23 C -0.104 4.104 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.393 0.607 40 H 0.272 0.728 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.480 8.125 -8.995 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.205 4.205 4 C -0.087 4.087 5 H 0.091 0.909 6 C -0.152 4.152 7 C -0.147 4.147 8 C -0.079 4.079 9 N -0.226 5.226 10 C -0.090 4.090 11 C 0.192 3.808 12 O -0.481 6.481 13 N -0.195 5.195 14 C -0.431 4.431 15 H 0.119 0.881 16 C -0.179 4.179 17 N -0.541 5.541 18 Si 0.756 3.244 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.069 4.069 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.226 0.774 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.680 8.109 -9.433 17.763 hybrid contribution 1.330 -1.090 0.471 1.783 sum -11.350 7.019 -8.962 16.075 Atomic orbital electron populations 1.21904 0.95748 1.01447 1.01331 1.21290 0.95303 0.96152 0.98808 1.21884 1.01358 0.96145 1.01081 1.20868 0.95531 0.95275 0.97029 0.90927 1.21491 1.00752 0.96310 0.96682 1.20573 0.97525 1.00698 0.95874 1.21010 0.94257 0.92351 1.00320 1.62029 1.19927 1.37718 1.02881 1.22226 0.94422 0.97857 0.94515 1.21105 0.85308 0.88550 0.85807 1.90485 1.74321 1.55517 1.27824 1.42027 1.29201 1.30735 1.17521 1.19705 1.09902 1.09462 1.04053 0.88051 1.25272 0.98577 0.98924 0.95079 1.69605 1.36577 1.40651 1.07224 0.85874 0.80174 0.80726 0.77614 1.20383 1.20874 1.19458 1.21852 0.95100 0.99044 0.90914 1.22100 0.94682 0.99188 0.98265 0.92777 0.93327 0.92533 0.91756 0.92829 0.92347 0.93489 0.92168 0.92063 0.92401 0.92019 0.92158 0.92606 0.89571 0.89419 0.77413 0.91807 0.92632 0.92093 0.92792 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.85 37.15 0.33 -1.01 16 2 C -0.10 -0.99 2.36 -90.63 -0.21 -1.21 16 3 C -0.15 -1.42 8.69 37.16 0.32 -1.10 16 4 C -0.07 -0.83 1.44 -91.21 -0.13 -0.96 16 5 H 0.07 0.95 7.37 -51.93 -0.38 0.56 16 6 C -0.11 -1.43 4.96 -27.21 -0.13 -1.56 16 7 C -0.11 -1.44 5.53 -29.32 -0.16 -1.60 16 8 C 0.05 0.79 4.23 -6.70 -0.03 0.76 16 9 N -0.50 -8.43 4.45 -241.00 -1.07 -9.50 16 10 C 0.04 0.75 5.57 -4.98 -0.03 0.72 16 11 C 0.41 9.41 6.99 -10.99 -0.08 9.33 16 12 O -0.60 -15.37 11.96 5.55 0.07 -15.30 16 13 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 14 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 15 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 16 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 17 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 18 Si 0.93 21.07 29.55 -169.99 -5.02 16.04 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.06 1.02 3.75 -4.67 -0.02 1.00 16 23 C -0.10 -1.41 4.33 -25.49 -0.11 -1.52 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.50 6.33 -51.93 -0.33 0.17 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 6.63 -51.93 -0.34 0.23 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.84 7.15 -51.93 -0.37 0.47 16 32 H 0.06 0.67 5.71 -51.93 -0.30 0.37 16 33 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.06 0.79 7.59 -51.93 -0.39 0.39 16 35 H 0.06 1.18 5.91 -51.93 -0.31 0.87 16 36 H 0.06 0.93 7.64 -51.93 -0.40 0.53 16 37 H 0.09 1.42 7.89 -51.93 -0.41 1.01 16 38 H 0.09 1.46 8.13 -51.93 -0.42 1.03 16 39 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.06 1.04 7.29 -51.93 -0.38 0.66 16 42 H 0.06 1.20 5.46 -51.93 -0.28 0.91 16 43 H 0.05 0.70 7.97 -51.93 -0.41 0.29 16 44 H 0.06 0.74 7.32 -51.93 -0.38 0.36 16 LS Contribution 328.12 15.07 4.94 4.94 Total: -1.00 -28.93 328.12 -8.39 -37.32 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.48 Total: 9.55 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.49 Total: -5.14 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.41 Total: -47.42 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.07 Total: -15.30 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.93 -8.39 -37.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114729666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.322 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds