Wall clock time and date at job start Mon Mar 30 2020 00:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47351 * 2 1 4 4 C 1.52995 * 109.47173 * 120.00349 * 2 1 3 5 5 H 1.08999 * 108.73785 * 305.19053 * 4 2 1 6 6 C 1.50467 * 108.77285 * 63.49300 * 4 2 1 7 7 C 1.54499 * 108.85381 * 212.95426 * 6 4 2 8 8 C 1.45866 * 111.59479 * 282.80339 * 7 6 4 9 9 N 1.47803 * 112.91293 * 61.33144 * 8 7 6 10 10 C 1.46902 * 110.99944 * 153.87092 * 9 8 7 11 11 C 1.50697 * 109.47108 * 66.04389 * 10 9 8 12 12 O 1.21288 * 120.00087 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99429 * 179.72790 * 11 10 9 14 14 C 1.37102 * 119.99644 * 179.97438 * 13 11 10 15 15 H 1.07998 * 119.99926 * 359.97438 * 14 13 11 16 16 C 1.38947 * 119.99788 * 179.97438 * 14 13 11 17 17 N 1.31405 * 120.00400 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99817 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46990 * 90.00242 * 18 16 14 20 20 H 1.48501 * 109.47238 * 209.99974 * 18 16 14 21 21 H 1.48497 * 109.47288 * 330.00244 * 18 16 14 22 22 C 1.44274 * 109.46039 * 276.74037 * 9 8 7 23 23 C 1.54068 * 111.98492 * 96.44034 * 22 9 8 24 24 H 1.09000 * 109.47027 * 294.07830 * 1 2 3 25 25 H 1.09003 * 109.47412 * 54.07624 * 1 2 3 26 26 H 1.08996 * 109.47616 * 174.07941 * 1 2 3 27 27 H 1.09001 * 109.47007 * 240.00286 * 2 1 3 28 28 H 1.09001 * 109.46831 * 60.00178 * 3 2 1 29 29 H 1.09000 * 109.46907 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.47191 * 300.00028 * 3 2 1 31 31 H 1.09005 * 109.57469 * 93.14199 * 6 4 2 32 32 H 1.09002 * 109.67688 * 332.83057 * 6 4 2 33 33 H 1.09009 * 109.05706 * 162.26459 * 7 6 4 34 34 H 1.08996 * 109.05896 * 43.35042 * 7 6 4 35 35 H 1.08994 * 108.79585 * 300.44783 * 8 7 6 36 36 H 1.08999 * 108.70837 * 182.15113 * 8 7 6 37 37 H 1.08993 * 109.46783 * 306.03924 * 10 9 8 38 38 H 1.09006 * 109.46874 * 186.04497 * 10 9 8 39 39 H 0.96997 * 120.00499 * 359.97438 * 13 11 10 40 40 H 0.96996 * 120.00549 * 179.97438 * 17 16 14 41 41 H 1.09004 * 108.97645 * 217.08486 * 22 9 8 42 42 H 1.09004 * 108.98083 * 335.79313 * 22 9 8 43 43 H 1.09001 * 108.91806 * 198.18968 * 23 22 9 44 44 H 1.08996 * 108.84827 * 79.58205 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 1 1.5958 -0.2550 2.1286 6 6 1.6019 -2.1596 1.1905 7 6 1.3388 -2.6604 2.6283 8 6 2.5832 -2.9519 3.3313 9 7 3.4525 -1.7657 3.4785 10 6 4.3297 -1.8979 4.6494 11 6 5.3007 -3.0283 4.4246 12 8 5.2657 -3.6611 3.3905 13 7 6.2118 -3.3320 5.3702 14 6 7.0948 -4.3607 5.1659 15 1 7.0600 -4.9279 4.2475 16 6 8.0345 -4.6735 6.1405 17 7 8.0765 -3.9838 7.2581 18 14 9.2372 -6.0757 5.8624 19 1 10.4611 -5.5544 5.2025 20 1 9.5994 -6.6834 7.1681 21 1 8.6071 -7.1037 4.9957 22 6 4.2236 -1.5822 2.2729 23 6 3.5727 -0.5595 1.3221 24 1 -0.3633 0.4193 0.9383 25 1 -0.3634 0.6029 -0.8322 26 1 -0.3634 -1.0221 -0.1060 27 1 1.8932 -0.5138 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8899 31 1 2.3862 -2.7618 0.7318 32 1 0.6878 -2.2412 0.6024 33 1 0.7342 -3.5664 2.5846 34 1 0.7910 -1.8946 3.1772 35 1 3.1266 -3.7192 2.7799 36 1 2.3430 -3.3363 4.3225 37 1 3.7270 -2.1069 5.5331 38 1 4.8811 -0.9692 4.7970 39 1 6.2428 -2.8229 6.1952 40 1 8.7322 -4.2024 7.9386 41 1 5.2211 -1.2332 2.5399 42 1 4.3104 -2.5393 1.7585 43 1 3.9897 -0.6902 0.3235 44 1 3.8055 0.4457 1.6732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114729666.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:30 Heat of formation + Delta-G solvation = -71.968015 kcal Electronic energy + Delta-G solvation = -21607.469553 eV Core-core repulsion = 18558.052290 eV Total energy + Delta-G solvation = -3049.417263 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19782 -39.55921 -37.27326 -35.84816 -34.00218 -33.32754 -32.39221 -29.42254 -28.21505 -26.89484 -25.49696 -25.23498 -21.95726 -21.57562 -21.03358 -20.17576 -19.63990 -17.77507 -16.99126 -16.69147 -16.52028 -15.85277 -15.75253 -15.54164 -15.35542 -14.98336 -14.63392 -14.12731 -13.92049 -13.84276 -13.51647 -13.28322 -13.04094 -12.90571 -12.57646 -12.51839 -12.46472 -12.28822 -12.14592 -12.12731 -11.98049 -11.61032 -11.54440 -11.35760 -11.14045 -10.94595 -10.84553 -10.77754 -10.03306 -9.10639 -8.48726 -5.98859 1.33908 1.38116 1.50645 2.00304 2.26642 3.00963 3.17302 3.24076 3.77246 3.92723 4.05773 4.13036 4.21685 4.34544 4.39927 4.44487 4.53534 4.59801 4.62676 4.66080 4.76564 4.87093 4.91774 4.94913 5.00906 5.07903 5.10417 5.12874 5.18596 5.28745 5.35710 5.36697 5.42474 5.43946 5.50699 5.55240 5.65736 5.77115 5.91451 6.08222 6.20478 6.56419 7.08924 7.52436 8.07295 8.67003 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.041238 B = 0.003815 C = 0.003760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.817401 B = 7337.970660 C = 7445.574858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.063 4.063 5 H 0.070 0.930 6 C -0.112 4.112 7 C -0.106 4.106 8 C 0.053 3.947 9 N -0.489 5.489 10 C 0.049 3.951 11 C 0.407 3.593 12 O -0.625 6.625 13 N -0.571 5.571 14 C -0.335 4.335 15 H 0.076 0.924 16 C -0.012 4.012 17 N -0.919 5.919 18 Si 0.991 3.009 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.274 1.274 22 C 0.066 3.934 23 C -0.096 4.096 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.053 0.947 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.034 0.966 42 H 0.028 0.972 43 H 0.057 0.943 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.708 9.133 -9.174 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.082 4.082 5 H 0.089 0.911 6 C -0.149 4.149 7 C -0.144 4.144 8 C -0.074 4.074 9 N -0.211 5.211 10 C -0.083 4.083 11 C 0.194 3.806 12 O -0.512 6.512 13 N -0.208 5.208 14 C -0.464 4.464 15 H 0.094 0.906 16 C -0.212 4.212 17 N -0.559 5.559 18 Si 0.815 3.185 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.199 1.199 22 C -0.063 4.063 23 C -0.134 4.134 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.230 0.770 40 H 0.088 0.912 41 H 0.052 0.948 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.922 9.137 -9.608 19.226 hybrid contribution 1.692 -1.399 0.494 2.250 sum -12.230 7.738 -9.114 17.103 Atomic orbital electron populations 1.21877 0.94511 1.01873 1.01905 1.21246 0.96291 0.96230 0.97459 1.21873 1.00992 0.95769 1.01750 1.20816 0.94027 0.95238 0.98109 0.91130 1.21482 1.01054 0.96125 0.96256 1.20548 0.95844 1.01866 0.96111 1.21025 0.95062 0.91239 1.00083 1.62224 1.19112 1.37361 1.02406 1.22335 0.93735 0.96330 0.95931 1.22138 0.84975 0.88868 0.84637 1.90483 1.74987 1.56802 1.28977 1.42099 1.29713 1.30745 1.18193 1.19639 1.11917 1.10958 1.03922 0.90587 1.26031 0.99584 1.00993 0.94567 1.69664 1.37126 1.41541 1.07605 0.84954 0.77936 0.77669 0.77931 1.19643 1.19397 1.19913 1.21786 0.94752 0.98427 0.91305 1.22034 0.95909 0.98177 0.97315 0.92631 0.92244 0.92295 0.91965 0.92705 0.92938 0.92314 0.94328 0.89893 0.91079 0.90610 0.95902 0.92819 0.87321 0.87439 0.77020 0.91232 0.94761 0.95348 0.92412 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.85 71.98 0.64 -1.57 16 2 C -0.09 -1.70 2.36 -10.80 -0.03 -1.73 16 3 C -0.15 -2.47 8.69 71.98 0.63 -1.84 16 4 C -0.06 -1.42 1.44 -11.17 -0.02 -1.43 16 5 H 0.07 1.65 7.37 -2.39 -0.02 1.63 16 6 C -0.11 -2.63 4.96 30.28 0.15 -2.48 16 7 C -0.11 -2.65 5.53 28.92 0.16 -2.49 16 8 C 0.05 1.76 4.23 83.94 0.36 2.12 16 9 N -0.49 -16.19 4.45 -916.38 -4.08 -20.27 16 10 C 0.05 1.72 5.57 85.56 0.48 2.20 16 11 C 0.41 19.30 6.99 87.66 0.61 19.91 16 12 O -0.62 -33.72 11.96 -3.05 -0.04 -33.76 16 13 N -0.57 -29.51 5.29 -306.99 -1.62 -31.13 16 14 C -0.33 -19.16 9.68 84.04 0.81 -18.34 16 15 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 16 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 17 N -0.92 -49.91 13.05 21.66 0.28 -49.62 16 18 Si 0.99 43.30 29.55 68.60 2.03 45.33 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.07 2.31 3.75 87.15 0.33 2.64 16 23 C -0.10 -2.53 4.33 31.40 0.14 -2.40 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.87 6.33 -2.39 -0.02 0.85 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 0.94 6.63 -2.39 -0.02 0.92 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.04 1.08 7.15 -2.38 -0.02 1.06 16 32 H 0.08 1.61 5.71 -2.39 -0.01 1.59 16 33 H 0.07 1.60 8.14 -2.38 -0.02 1.59 16 34 H 0.08 1.73 7.59 -2.39 -0.02 1.71 16 35 H 0.02 0.93 5.91 -2.39 -0.01 0.91 16 36 H 0.05 1.76 7.64 -2.39 -0.02 1.74 16 37 H 0.11 3.41 7.89 -2.39 -0.02 3.40 16 38 H 0.11 3.44 8.13 -2.38 -0.02 3.42 16 39 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 40 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.03 1.31 7.29 -2.39 -0.02 1.29 16 42 H 0.03 1.17 5.46 -2.39 -0.01 1.16 16 43 H 0.06 1.47 7.97 -2.39 -0.02 1.46 16 44 H 0.07 1.62 7.32 -2.39 -0.02 1.60 16 Total: -1.00 -63.51 328.12 1.54 -61.97 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.25 Total: 33.06 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 4.72 Total: -5.59 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -5.42 Total: -101.03 kcal Atomic # 8 Polarization: -33.72 SS G_CDS: -0.04 Total: -33.76 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -63.51 1.54 -61.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114729666.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.994 kcal (2) G-P(sol) polarization free energy of solvation -63.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds