Wall clock time and date at job start Mon Mar 30 2020 01:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47804 * 2 1 4 4 C 1.53001 * 109.47342 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46753 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99813 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99778 * 355.33422 * 6 5 4 8 8 C 1.50697 * 120.00117 * 175.32665 * 6 5 4 9 9 N 1.46496 * 109.46823 * 35.72740 * 8 6 5 10 10 C 1.36935 * 120.00729 * 57.13537 * 9 8 6 11 11 H 1.08005 * 119.99348 * 4.80734 * 10 9 8 12 12 C 1.38805 * 120.00296 * 184.81580 * 10 9 8 13 13 N 1.31621 * 120.00069 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00202 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47093 * 90.00259 * 14 12 10 16 16 H 1.48505 * 109.47310 * 210.00157 * 14 12 10 17 17 H 1.48502 * 109.47397 * 330.00229 * 14 12 10 18 18 C 1.53007 * 109.46946 * 155.72263 * 8 6 5 19 19 C 1.52999 * 109.46717 * 180.02562 * 18 8 6 20 20 C 1.52993 * 109.47380 * 299.99950 * 19 18 8 21 21 C 1.53000 * 109.47295 * 60.00108 * 20 19 18 22 22 C 1.52996 * 109.47330 * 300.00165 * 21 20 19 23 23 H 1.08991 * 109.47700 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47005 * 300.00842 * 1 2 3 25 25 H 1.09004 * 109.46929 * 59.99812 * 1 2 3 26 26 H 1.09003 * 109.47005 * 239.99157 * 2 1 3 27 27 H 1.09004 * 109.46929 * 120.00188 * 2 1 3 28 28 H 1.08998 * 109.47081 * 59.99381 * 3 2 1 29 29 H 1.09003 * 109.46509 * 300.00084 * 3 2 1 30 30 H 1.08992 * 109.47267 * 59.99699 * 4 3 2 31 31 H 1.09000 * 109.46574 * 299.99754 * 4 3 2 32 32 H 0.97001 * 120.00421 * 359.97438 * 5 4 3 33 33 H 0.97003 * 119.99727 * 237.13188 * 9 8 6 34 34 H 0.97000 * 120.00063 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.46956 * 60.00220 * 18 8 6 36 36 H 1.08993 * 109.47211 * 300.00403 * 18 8 6 37 37 H 1.09006 * 109.46753 * 180.02562 * 19 18 8 38 38 H 1.08994 * 109.47296 * 60.00345 * 19 18 8 39 39 H 1.09005 * 109.47241 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47124 * 300.00176 * 20 19 18 41 41 H 1.09007 * 109.46622 * 60.00308 * 21 20 19 42 42 H 1.08993 * 109.47351 * 179.97438 * 21 20 19 43 43 H 1.08994 * 109.47663 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.46938 * 299.99839 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 -0.0013 6 6 5.3836 3.0697 -0.0014 7 8 6.1710 2.1513 0.0845 8 6 5.8868 4.4861 -0.1083 9 7 4.9811 5.3820 0.6150 10 6 4.7252 5.1706 1.9435 11 1 5.2499 4.3918 2.4771 12 6 3.7916 5.9569 2.6043 13 7 3.5454 5.7533 3.8811 14 14 2.8845 7.3041 1.6815 15 1 1.6366 6.7502 1.0974 16 1 2.5461 8.4049 2.6191 17 1 3.7497 7.8283 0.5943 18 6 7.2877 4.5770 0.5004 19 6 7.7982 6.0152 0.3923 20 6 7.8542 6.4273 -1.0800 21 6 6.4535 6.3364 -1.6887 22 6 5.9428 4.8983 -1.5808 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6768 1.9562 -0.8900 30 1 3.9331 0.9286 -0.8908 31 1 3.9337 0.9283 0.8892 32 1 3.4282 3.5608 -0.0016 33 1 4.5625 6.1251 0.1528 34 1 2.8932 6.3031 4.3430 35 1 7.9615 3.9104 -0.0377 36 1 7.2477 4.2838 1.5494 37 1 8.7964 6.0799 0.8256 38 1 7.1243 6.6815 0.9307 39 1 8.2184 7.4518 -1.1570 40 1 8.5283 5.7610 -1.6184 41 1 5.7795 7.0028 -1.1503 42 1 6.4933 6.6304 -2.7375 43 1 4.9447 4.8335 -2.0140 44 1 6.6169 4.2320 -2.1192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132813994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:23 Heat of formation + Delta-G solvation = -57.872489 kcal Electronic energy + Delta-G solvation = -22028.142738 eV Core-core repulsion = 18979.336702 eV Total energy + Delta-G solvation = -3048.806036 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.79441 -37.43876 -35.75342 -33.94320 -33.04467 -31.44168 -30.33689 -28.93928 -28.40375 -24.03107 -23.30711 -22.27832 -21.91023 -21.11048 -19.72909 -18.24601 -17.83740 -16.49904 -15.65123 -15.55667 -14.79679 -14.49608 -14.28031 -13.98619 -13.66879 -13.52051 -13.34170 -12.82215 -12.61179 -12.43937 -12.22506 -12.01339 -11.82675 -11.69673 -11.33593 -11.07742 -11.06387 -10.97540 -10.87561 -10.65907 -10.53936 -10.35381 -10.16669 -9.95949 -9.75880 -9.66052 -9.27445 -8.73337 -8.33782 -7.36812 -5.84836 -3.23929 3.27696 3.30011 3.37349 3.44094 3.91381 4.48715 4.96915 5.00395 5.06131 5.10090 5.18197 5.21360 5.34023 5.46725 5.48015 5.59773 5.69797 5.74778 5.79253 5.84704 5.87391 5.96084 5.98118 6.00331 6.04228 6.05573 6.15041 6.19231 6.31913 6.38522 6.42334 6.54048 6.57133 6.63934 6.73166 7.01394 7.08191 7.19631 7.90593 8.24666 8.37472 8.99608 9.13030 9.80614 9.99727 11.32627 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.007526 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.812754 B = 3719.342558 C = 4927.575561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.133 4.133 4 C 0.121 3.879 5 N -0.715 5.715 6 C 0.520 3.480 7 O -0.569 6.569 8 C 0.194 3.806 9 N -0.735 5.735 10 C -0.244 4.244 11 H 0.091 0.909 12 C 0.013 3.987 13 N -0.926 5.926 14 Si 0.878 3.122 15 H -0.284 1.284 16 H -0.291 1.291 17 H -0.276 1.276 18 C -0.103 4.103 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.114 4.114 22 C -0.114 4.114 23 H 0.052 0.948 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.408 0.592 33 H 0.365 0.635 34 H 0.260 0.740 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.062 0.938 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.724 -3.736 -11.785 12.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.171 4.171 4 C -0.003 4.003 5 N -0.366 5.366 6 C 0.305 3.695 7 O -0.448 6.448 8 C 0.100 3.900 9 N -0.381 5.381 10 C -0.373 4.373 11 H 0.108 0.892 12 C -0.183 4.183 13 N -0.573 5.573 14 Si 0.708 3.292 15 H -0.210 1.210 16 H -0.218 1.218 17 H -0.202 1.202 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.152 4.152 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.244 0.756 33 H 0.200 0.800 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.206 -4.490 -11.488 12.336 hybrid contribution -1.108 1.364 -0.326 1.787 sum -1.314 -3.126 -11.815 12.292 Atomic orbital electron populations 1.21764 0.95833 1.01351 1.01953 1.21422 0.95811 0.96393 1.02155 1.21825 0.94807 0.97422 1.03003 1.21219 0.93249 0.84495 1.01364 1.45858 1.07943 1.07904 1.74888 1.21654 0.81859 0.92169 0.73774 1.90578 1.55979 1.47168 1.51034 1.19737 0.91619 0.86685 0.91955 1.42899 1.54015 1.32078 1.09116 1.18961 1.18218 1.15927 0.84219 0.89160 1.24643 0.99075 0.99019 0.95598 1.69699 1.37198 1.41896 1.08491 0.86680 0.80320 0.82955 0.79262 1.21034 1.21786 1.20239 1.21628 0.94947 0.95973 1.01760 1.21425 1.00350 0.97699 0.95447 1.21517 0.96437 1.00335 0.97036 1.21475 0.97404 0.96457 0.99876 1.21661 1.01272 0.97338 0.94909 0.92921 0.92541 0.92860 0.92054 0.91727 0.90777 0.91695 0.92594 0.92065 0.75636 0.79994 0.92986 0.92449 0.91404 0.93060 0.90450 0.92721 0.92639 0.91451 0.92525 0.91884 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.12 -1.33 5.93 -26.73 -0.16 -1.49 16 3 C -0.13 -1.75 5.33 -26.73 -0.14 -1.90 16 4 C 0.12 1.94 5.68 -4.04 -0.02 1.92 16 5 N -0.71 -13.25 5.28 -60.30 -0.32 -13.57 16 6 C 0.52 10.74 6.06 -10.99 -0.07 10.67 16 7 O -0.57 -13.16 16.09 5.56 0.09 -13.07 16 8 C 0.19 3.71 0.68 -132.97 -0.09 3.62 16 9 N -0.74 -15.57 3.17 -48.31 -0.15 -15.73 16 10 C -0.24 -6.28 8.95 -15.06 -0.13 -6.41 16 11 H 0.09 2.66 7.46 -52.48 -0.39 2.27 16 12 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 13 N -0.93 -27.64 13.97 55.49 0.78 -26.87 16 14 Si 0.88 20.41 27.78 -169.99 -4.72 15.68 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -5.97 6.46 56.52 0.36 -5.61 16 18 C -0.10 -1.99 4.13 -26.73 -0.11 -2.10 16 19 C -0.11 -1.89 5.76 -26.74 -0.15 -2.05 16 20 C -0.12 -1.64 5.92 -26.73 -0.16 -1.80 16 21 C -0.11 -1.64 5.75 -26.73 -0.15 -1.79 16 22 C -0.11 -1.77 4.77 -26.73 -0.13 -1.90 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.41 7.51 7.68 -40.82 -0.31 7.20 16 33 H 0.37 7.53 4.27 -40.82 -0.17 7.36 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 36 H 0.07 1.50 7.34 -51.93 -0.38 1.12 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.49 7.60 -51.93 -0.39 1.10 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 1.06 6.80 -51.93 -0.35 0.70 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 340.81 15.07 5.14 5.14 Total: -1.00 -29.96 340.81 -8.17 -38.13 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -7.93 Total: 14.38 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.05 Total: -4.10 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.30 Total: -56.16 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.72 Total: 15.68 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.96 -8.17 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132813994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.739 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds