Wall clock time and date at job start Mon Mar 30 2020 01:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47804 * 2 1 4 4 C 1.53001 * 109.47342 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46753 * 179.97438 * 4 3 2 6 6 C 1.34780 * 119.99813 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99778 * 355.33422 * 6 5 4 8 8 C 1.50697 * 120.00117 * 175.32665 * 6 5 4 9 9 N 1.46496 * 109.46823 * 35.72740 * 8 6 5 10 10 C 1.36935 * 120.00729 * 57.13537 * 9 8 6 11 11 H 1.08005 * 119.99348 * 4.80734 * 10 9 8 12 12 C 1.38805 * 120.00296 * 184.81580 * 10 9 8 13 13 N 1.31621 * 120.00069 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00202 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.47093 * 90.00259 * 14 12 10 16 16 H 1.48505 * 109.47310 * 210.00157 * 14 12 10 17 17 H 1.48502 * 109.47397 * 330.00229 * 14 12 10 18 18 C 1.53007 * 109.46946 * 155.72263 * 8 6 5 19 19 C 1.52999 * 109.46717 * 180.02562 * 18 8 6 20 20 C 1.52993 * 109.47380 * 299.99950 * 19 18 8 21 21 C 1.53000 * 109.47295 * 60.00108 * 20 19 18 22 22 C 1.52996 * 109.47330 * 300.00165 * 21 20 19 23 23 H 1.08991 * 109.47700 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47005 * 300.00842 * 1 2 3 25 25 H 1.09004 * 109.46929 * 59.99812 * 1 2 3 26 26 H 1.09003 * 109.47005 * 239.99157 * 2 1 3 27 27 H 1.09004 * 109.46929 * 120.00188 * 2 1 3 28 28 H 1.08998 * 109.47081 * 59.99381 * 3 2 1 29 29 H 1.09003 * 109.46509 * 300.00084 * 3 2 1 30 30 H 1.08992 * 109.47267 * 59.99699 * 4 3 2 31 31 H 1.09000 * 109.46574 * 299.99754 * 4 3 2 32 32 H 0.97001 * 120.00421 * 359.97438 * 5 4 3 33 33 H 0.97003 * 119.99727 * 237.13188 * 9 8 6 34 34 H 0.97000 * 120.00063 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.46956 * 60.00220 * 18 8 6 36 36 H 1.08993 * 109.47211 * 300.00403 * 18 8 6 37 37 H 1.09006 * 109.46753 * 180.02562 * 19 18 8 38 38 H 1.08994 * 109.47296 * 60.00345 * 19 18 8 39 39 H 1.09005 * 109.47241 * 180.02562 * 20 19 18 40 40 H 1.09002 * 109.47124 * 300.00176 * 20 19 18 41 41 H 1.09007 * 109.46622 * 60.00308 * 21 20 19 42 42 H 1.08993 * 109.47351 * 179.97438 * 21 20 19 43 43 H 1.08994 * 109.47663 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.46938 * 299.99839 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 7 4.0585 2.8235 -0.0013 6 6 5.3836 3.0697 -0.0014 7 8 6.1710 2.1513 0.0845 8 6 5.8868 4.4861 -0.1083 9 7 4.9811 5.3820 0.6150 10 6 4.7252 5.1706 1.9435 11 1 5.2499 4.3918 2.4771 12 6 3.7916 5.9569 2.6043 13 7 3.5454 5.7533 3.8811 14 14 2.8845 7.3041 1.6815 15 1 1.6366 6.7502 1.0974 16 1 2.5461 8.4049 2.6191 17 1 3.7497 7.8283 0.5943 18 6 7.2877 4.5770 0.5004 19 6 7.7982 6.0152 0.3923 20 6 7.8542 6.4273 -1.0800 21 6 6.4535 6.3364 -1.6887 22 6 5.9428 4.8983 -1.5808 23 1 -0.3634 -1.0275 0.0005 24 1 -0.3633 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6768 1.9563 0.8899 29 1 1.6768 1.9562 -0.8900 30 1 3.9331 0.9286 -0.8908 31 1 3.9337 0.9283 0.8892 32 1 3.4282 3.5608 -0.0016 33 1 4.5625 6.1251 0.1528 34 1 2.8932 6.3031 4.3430 35 1 7.9615 3.9104 -0.0377 36 1 7.2477 4.2838 1.5494 37 1 8.7964 6.0799 0.8256 38 1 7.1243 6.6815 0.9307 39 1 8.2184 7.4518 -1.1570 40 1 8.5283 5.7610 -1.6184 41 1 5.7795 7.0028 -1.1503 42 1 6.4933 6.6304 -2.7375 43 1 4.9447 4.8335 -2.0140 44 1 6.6169 4.2320 -2.1192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132813994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:22 Heat of formation + Delta-G solvation = -76.810386 kcal Electronic energy + Delta-G solvation = -22028.963947 eV Core-core repulsion = 18979.336702 eV Total energy + Delta-G solvation = -3049.627244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.37101 -38.90401 -37.03940 -35.65356 -34.44841 -33.25714 -31.68913 -30.58104 -29.60942 -25.54138 -24.99405 -23.60903 -23.24283 -22.22438 -21.12587 -19.82545 -19.76496 -18.09274 -17.11916 -16.82847 -16.36229 -16.24933 -15.68232 -15.32832 -15.00568 -14.99390 -14.47668 -14.35751 -14.10923 -14.02163 -13.60366 -13.25862 -13.22974 -13.02265 -12.86750 -12.55470 -12.44016 -12.15590 -12.06150 -12.01261 -12.00212 -11.74226 -11.56684 -11.52886 -11.34582 -11.25292 -10.87263 -10.48630 -9.91730 -9.30065 -7.97652 -5.35434 1.41692 1.45090 1.52501 1.77658 2.44506 2.51072 3.33570 3.48122 3.85123 3.87566 3.88490 3.98959 4.00356 4.17996 4.32935 4.42607 4.44558 4.52143 4.61049 4.64296 4.67595 4.68926 4.78133 4.90926 4.91485 4.93127 5.05610 5.11540 5.17243 5.22618 5.33924 5.34546 5.36255 5.41783 5.44148 5.48319 5.66638 5.67917 5.80817 6.21964 6.71016 7.07623 7.40132 7.78865 8.03422 9.23573 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.013777 B = 0.007526 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.812754 B = 3719.342558 C = 4927.575561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.123 4.123 4 C 0.119 3.881 5 N -0.711 5.711 6 C 0.510 3.490 7 O -0.601 6.601 8 C 0.189 3.811 9 N -0.725 5.725 10 C -0.215 4.215 11 H 0.039 0.961 12 C -0.052 4.052 13 N -0.982 5.982 14 Si 0.949 3.051 15 H -0.272 1.272 16 H -0.306 1.306 17 H -0.244 1.244 18 C -0.101 4.101 19 C -0.108 4.108 20 C -0.111 4.111 21 C -0.112 4.112 22 C -0.109 4.109 23 H 0.066 0.934 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.037 0.963 32 H 0.409 0.591 33 H 0.374 0.626 34 H 0.256 0.744 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 -2.601 -15.377 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.161 4.161 4 C -0.005 4.005 5 N -0.361 5.361 6 C 0.296 3.704 7 O -0.482 6.482 8 C 0.096 3.904 9 N -0.372 5.372 10 C -0.346 4.346 11 H 0.057 0.943 12 C -0.244 4.244 13 N -0.632 5.632 14 Si 0.776 3.224 15 H -0.197 1.197 16 H -0.233 1.233 17 H -0.168 1.168 18 C -0.140 4.140 19 C -0.146 4.146 20 C -0.148 4.148 21 C -0.150 4.150 22 C -0.147 4.147 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.245 0.755 33 H 0.211 0.789 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.097 0.903 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.768 -3.363 -15.138 15.527 hybrid contribution -0.839 0.879 0.854 1.485 sum -1.607 -2.484 -14.284 14.588 Atomic orbital electron populations 1.21748 0.94618 1.02341 1.01976 1.21421 0.96808 0.94772 1.02549 1.21771 0.92386 0.99062 1.02858 1.21367 0.95301 0.83034 1.00760 1.45926 1.07374 1.09065 1.73711 1.21978 0.82374 0.92593 0.73492 1.90553 1.56797 1.48148 1.52726 1.19943 0.90534 0.85444 0.94506 1.42679 1.54417 1.32720 1.07349 1.18602 1.16474 1.13708 0.85821 0.94269 1.25413 1.00550 1.02103 0.96353 1.69909 1.38626 1.43746 1.10870 0.85521 0.79542 0.78996 0.78327 1.19724 1.23341 1.16831 1.21584 0.95677 0.97886 0.98901 1.21382 0.99984 0.95143 0.98055 1.21507 0.97140 1.01878 0.94301 1.21505 0.96751 0.94825 1.01890 1.21691 1.02784 0.98699 0.91497 0.91497 0.93382 0.91976 0.90638 0.92427 0.92653 0.89975 0.91334 0.94461 0.75493 0.78936 0.93499 0.91866 0.96028 0.92122 0.93079 0.90628 0.91066 0.92647 0.88965 0.90325 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.91 71.98 0.71 -1.99 16 2 C -0.12 -2.46 5.93 30.59 0.18 -2.28 16 3 C -0.12 -3.15 5.33 30.59 0.16 -2.99 16 4 C 0.12 3.83 5.68 86.38 0.49 4.32 16 5 N -0.71 -26.42 5.28 -463.07 -2.45 -28.86 16 6 C 0.51 21.27 6.06 87.66 0.53 21.81 16 7 O -0.60 -28.50 16.09 -3.03 -0.05 -28.55 16 8 C 0.19 7.12 0.68 2.86 0.00 7.12 16 9 N -0.73 -30.38 3.17 -306.75 -0.97 -31.35 16 10 C -0.22 -11.45 8.95 84.03 0.75 -10.70 16 11 H 0.04 2.48 7.46 -2.91 -0.02 2.46 16 12 C -0.05 -2.91 5.50 84.86 0.47 -2.44 16 13 N -0.98 -60.98 13.97 21.65 0.30 -60.68 16 14 Si 0.95 41.80 27.78 68.60 1.91 43.70 16 15 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 16 H -0.31 -14.24 7.11 99.48 0.71 -13.54 16 17 H -0.24 -9.36 6.46 99.48 0.64 -8.72 16 18 C -0.10 -3.93 4.13 30.60 0.13 -3.81 16 19 C -0.11 -3.56 5.76 30.59 0.18 -3.38 16 20 C -0.11 -2.74 5.92 30.59 0.18 -2.56 16 21 C -0.11 -2.72 5.75 30.59 0.18 -2.54 16 22 C -0.11 -3.04 4.77 30.59 0.15 -2.89 16 23 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.41 14.85 7.68 -92.71 -0.71 14.14 16 33 H 0.37 14.55 4.27 -92.71 -0.40 14.16 16 34 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 35 H 0.06 2.37 7.87 -2.39 -0.02 2.35 16 36 H 0.02 1.00 7.34 -2.39 -0.02 0.98 16 37 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.05 1.94 7.60 -2.39 -0.02 1.93 16 39 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.05 1.50 6.80 -2.38 -0.02 1.48 16 42 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -68.63 340.81 2.64 -65.99 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: -0.21 Total: 42.07 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 4.11 Total: -2.33 kcal Atomic # 7 Polarization: -117.78 SS G_CDS: -3.11 Total: -120.89 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 1.91 Total: 43.70 kcal Total: -68.63 2.64 -65.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132813994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.822 kcal (2) G-P(sol) polarization free energy of solvation -68.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds