Wall clock time and date at job start Mon Mar 30 2020 00:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47284 * 2 1 4 4 C 1.52999 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47008 * 55.00047 * 4 3 2 6 6 C 1.52995 * 109.46950 * 295.00122 * 4 3 2 7 7 C 1.52995 * 109.47170 * 174.99767 * 4 3 2 8 8 H 1.09006 * 109.87815 * 82.74000 * 7 4 3 9 9 C 1.54318 * 109.89172 * 321.54602 * 7 4 3 10 10 C 1.55133 * 103.02091 * 218.31059 * 9 7 4 11 11 C 1.54903 * 101.65402 * 35.64889 * 10 9 7 12 12 N 1.47440 * 109.88881 * 203.77406 * 7 4 3 13 13 C 1.46896 * 111.00314 * 356.14885 * 12 7 4 14 14 C 1.50697 * 109.47429 * 176.64200 * 13 12 7 15 15 O 1.21295 * 120.00104 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99972 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99961 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99758 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00008 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00116 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00034 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47501 * 89.99975 * 21 19 17 23 23 H 1.48502 * 109.47369 * 210.00301 * 21 19 17 24 24 H 1.48502 * 109.47046 * 330.00201 * 21 19 17 25 25 H 1.09008 * 109.47109 * 300.00071 * 1 2 3 26 26 H 1.09002 * 109.47112 * 59.99973 * 1 2 3 27 27 H 1.08993 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47153 * 240.00025 * 2 1 3 29 29 H 1.09001 * 109.47596 * 119.99818 * 2 1 3 30 30 H 1.09001 * 109.46656 * 300.00394 * 3 2 1 31 31 H 1.08999 * 109.47005 * 59.99934 * 3 2 1 32 32 H 1.09000 * 109.47503 * 53.68199 * 6 4 3 33 33 H 1.09009 * 109.46949 * 173.68174 * 6 4 3 34 34 H 1.08996 * 109.47321 * 293.68155 * 6 4 3 35 35 H 1.09005 * 110.70394 * 336.69374 * 9 7 4 36 36 H 1.09005 * 110.70821 * 99.92386 * 9 7 4 37 37 H 1.08999 * 110.98979 * 277.55831 * 10 9 7 38 38 H 1.09001 * 110.99297 * 153.74218 * 10 9 7 39 39 H 1.08999 * 110.37629 * 204.10081 * 11 10 9 40 40 H 1.09003 * 110.46818 * 81.81253 * 11 10 9 41 41 H 1.09000 * 109.47187 * 296.64677 * 13 12 7 42 42 H 1.09000 * 109.46971 * 56.63751 * 13 12 7 43 43 H 0.97001 * 120.00429 * 359.97438 * 16 14 13 44 44 H 0.96999 * 119.99576 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5701 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8331 1.3083 7 6 4.0801 2.8795 -0.1251 8 1 4.0811 3.3594 0.8536 9 6 3.1842 3.6712 -1.1008 10 6 4.2005 4.5573 -1.8679 11 6 5.4244 3.6133 -1.9696 12 7 5.4438 2.8804 -0.6857 13 6 5.9385 1.5095 -0.8694 14 6 7.2978 1.5487 -1.5187 15 8 7.8045 2.6139 -1.8012 16 7 7.9500 0.4001 -1.7865 17 6 9.1865 0.4358 -2.3778 18 1 9.6376 1.3843 -2.6292 19 6 9.8592 -0.7484 -2.6534 20 7 9.3104 -1.9025 -2.3469 21 14 11.5442 -0.6998 -3.4583 22 1 12.5927 -0.6390 -2.4085 23 1 11.7361 -1.9222 -4.2793 24 1 11.6434 0.5005 -4.3270 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.6267 -0.1478 1.4526 33 1 5.1637 0.7297 1.2628 34 1 3.8111 1.4832 2.1409 35 1 2.6684 2.9965 -1.7841 36 1 2.4704 4.2879 -0.5546 37 1 4.4451 5.4537 -1.2980 38 1 3.8239 4.8163 -2.8575 39 1 6.3406 4.1913 -2.0904 40 1 5.3023 2.9190 -2.8010 41 1 6.0130 1.0172 0.1002 42 1 5.2477 0.9562 -1.5056 43 1 7.5447 -0.4518 -1.5610 44 1 9.7799 -2.7291 -2.5397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135351285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:03 Heat of formation + Delta-G solvation = -35.049279 kcal Electronic energy + Delta-G solvation = -21581.435023 eV Core-core repulsion = 18533.618676 eV Total energy + Delta-G solvation = -3047.816347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.06112 -37.73480 -35.81223 -33.88174 -32.64417 -31.54335 -31.09781 -27.80626 -26.66471 -26.51043 -24.20487 -22.65193 -21.33387 -20.49115 -19.81329 -18.57317 -17.69380 -16.62915 -15.57058 -15.28987 -15.16231 -14.51399 -14.33688 -14.00926 -13.81167 -13.62692 -13.43519 -13.00389 -12.71525 -12.30410 -12.23776 -12.17855 -11.76384 -11.63879 -11.48881 -11.28215 -11.18438 -11.04301 -10.89280 -10.77271 -10.62519 -10.36851 -10.24602 -10.19030 -10.17149 -9.99174 -9.44331 -8.28459 -7.92713 -7.68296 -6.38236 -3.78722 3.20003 3.28260 3.34140 3.95638 4.13196 4.32264 4.62733 4.71485 4.85422 4.97435 5.02069 5.06853 5.20682 5.23389 5.31357 5.36327 5.43453 5.60755 5.62829 5.67103 5.72610 5.80130 5.81503 5.82729 5.91459 5.95119 5.99290 6.05124 6.10830 6.14870 6.15050 6.27718 6.37218 6.43698 6.52069 6.58561 6.74472 7.43498 7.48999 7.58528 8.10590 8.66401 9.22156 9.58995 10.11360 10.79686 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.004658 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.871631 B = 6009.097426 C = 6906.838737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.115 4.115 4 C -0.123 4.123 5 H 0.085 0.915 6 C -0.154 4.154 7 C 0.077 3.923 8 H 0.082 0.918 9 C -0.139 4.139 10 C -0.136 4.136 11 C 0.056 3.944 12 N -0.501 5.501 13 C 0.027 3.973 14 C 0.441 3.559 15 O -0.581 6.581 16 N -0.565 5.565 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.929 3.071 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.037 0.963 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.391 0.609 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 4.076 4.655 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.153 4.153 4 C -0.142 4.142 5 H 0.103 0.897 6 C -0.210 4.210 7 C -0.031 4.031 8 H 0.100 0.900 9 C -0.177 4.177 10 C -0.174 4.174 11 C -0.071 4.071 12 N -0.225 5.225 13 C -0.104 4.104 14 C 0.227 3.773 15 O -0.465 6.465 16 N -0.202 5.202 17 C -0.427 4.427 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.195 1.195 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.056 0.944 41 H 0.117 0.883 42 H 0.071 0.929 43 H 0.224 0.776 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.568 4.845 4.779 16.990 hybrid contribution 0.056 -1.144 -0.778 1.385 sum -15.512 3.702 4.000 16.441 Atomic orbital electron populations 1.21770 0.96245 1.01332 1.01527 1.21615 0.95412 0.97313 1.02236 1.21768 0.94837 0.96573 1.02095 1.21875 0.95426 0.97157 0.99720 0.89696 1.22148 1.01863 1.00461 0.96556 1.22580 0.87573 0.94297 0.98684 0.90032 1.22962 0.97881 0.98417 0.98452 1.22803 0.95961 0.98683 0.99952 1.23038 0.98531 0.95797 0.89759 1.63535 1.19957 1.13382 1.25636 1.22489 0.95315 0.91048 1.01516 1.19898 0.87608 0.84965 0.84848 1.90487 1.69109 1.29529 1.57357 1.41853 1.17605 1.06792 1.53979 1.19696 0.93387 0.94544 1.35096 0.87982 1.25239 1.00001 0.94661 0.98038 1.69615 1.39152 0.97517 1.48176 0.85876 0.81740 0.77714 0.79064 1.20423 1.20978 1.19464 0.92950 0.92966 0.93005 0.92101 0.91739 0.91477 0.92162 0.92553 0.91436 0.92779 0.91156 0.91326 0.91074 0.91454 0.88410 0.94416 0.88267 0.92931 0.77554 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.21 5.70 -26.73 -0.15 -1.36 16 3 C -0.11 -1.13 4.17 -26.73 -0.11 -1.24 16 4 C -0.12 -1.46 1.60 -90.63 -0.14 -1.61 16 5 H 0.09 1.14 5.14 -51.93 -0.27 0.87 16 6 C -0.15 -1.78 8.76 37.15 0.33 -1.46 16 7 C 0.08 1.03 3.23 -66.73 -0.22 0.82 16 8 H 0.08 1.09 7.86 -51.93 -0.41 0.68 16 9 C -0.14 -1.63 5.27 -24.91 -0.13 -1.76 16 10 C -0.14 -1.79 7.08 -24.60 -0.17 -1.97 16 11 C 0.06 0.98 5.19 -2.30 -0.01 0.97 16 12 N -0.50 -8.70 5.10 -224.79 -1.15 -9.85 16 13 C 0.03 0.50 4.17 -4.98 -0.02 0.48 16 14 C 0.44 10.64 7.44 -10.99 -0.08 10.55 16 15 O -0.58 -15.81 13.61 5.54 0.08 -15.73 16 16 N -0.57 -14.57 5.29 -10.96 -0.06 -14.63 16 17 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 18 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 21 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.60 6.44 -51.93 -0.33 0.27 16 30 H 0.07 0.65 5.70 -51.93 -0.30 0.36 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.59 6.29 -51.93 -0.33 0.27 16 33 H 0.07 0.89 5.24 -51.92 -0.27 0.62 16 34 H 0.05 0.58 8.00 -51.93 -0.42 0.17 16 35 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.99 6.84 -51.93 -0.36 1.63 16 40 H 0.04 0.70 7.73 -51.93 -0.40 0.29 16 41 H 0.10 1.71 4.77 -51.93 -0.25 1.46 16 42 H 0.05 0.91 5.88 -51.93 -0.31 0.61 16 43 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 330.21 15.07 4.98 4.98 Total: -1.00 -30.18 330.21 -8.21 -38.38 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.17 Total: 10.16 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.59 Total: -5.49 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.48 Total: -48.55 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.18 -8.21 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135351285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.335 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds