Wall clock time and date at job start Mon Mar 30 2020 00:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47284 * 2 1 4 4 C 1.52999 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47008 * 55.00047 * 4 3 2 6 6 C 1.52995 * 109.46950 * 295.00122 * 4 3 2 7 7 C 1.52995 * 109.47170 * 174.99767 * 4 3 2 8 8 H 1.09006 * 109.87815 * 82.74000 * 7 4 3 9 9 C 1.54318 * 109.89172 * 321.54602 * 7 4 3 10 10 C 1.55133 * 103.02091 * 218.31059 * 9 7 4 11 11 C 1.54903 * 101.65402 * 35.64889 * 10 9 7 12 12 N 1.47440 * 109.88881 * 203.77406 * 7 4 3 13 13 C 1.46896 * 111.00314 * 356.14885 * 12 7 4 14 14 C 1.50697 * 109.47429 * 176.64200 * 13 12 7 15 15 O 1.21295 * 120.00104 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99972 * 180.02562 * 14 13 12 17 17 C 1.37099 * 119.99961 * 179.97438 * 16 14 13 18 18 H 1.08003 * 119.99758 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00008 * 179.97438 * 17 16 14 20 20 N 1.31413 * 120.00116 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00034 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47501 * 89.99975 * 21 19 17 23 23 H 1.48502 * 109.47369 * 210.00301 * 21 19 17 24 24 H 1.48502 * 109.47046 * 330.00201 * 21 19 17 25 25 H 1.09008 * 109.47109 * 300.00071 * 1 2 3 26 26 H 1.09002 * 109.47112 * 59.99973 * 1 2 3 27 27 H 1.08993 * 109.46892 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47153 * 240.00025 * 2 1 3 29 29 H 1.09001 * 109.47596 * 119.99818 * 2 1 3 30 30 H 1.09001 * 109.46656 * 300.00394 * 3 2 1 31 31 H 1.08999 * 109.47005 * 59.99934 * 3 2 1 32 32 H 1.09000 * 109.47503 * 53.68199 * 6 4 3 33 33 H 1.09009 * 109.46949 * 173.68174 * 6 4 3 34 34 H 1.08996 * 109.47321 * 293.68155 * 6 4 3 35 35 H 1.09005 * 110.70394 * 336.69374 * 9 7 4 36 36 H 1.09005 * 110.70821 * 99.92386 * 9 7 4 37 37 H 1.08999 * 110.98979 * 277.55831 * 10 9 7 38 38 H 1.09001 * 110.99297 * 153.74218 * 10 9 7 39 39 H 1.08999 * 110.37629 * 204.10081 * 11 10 9 40 40 H 1.09003 * 110.46818 * 81.81253 * 11 10 9 41 41 H 1.09000 * 109.47187 * 296.64677 * 13 12 7 42 42 H 1.09000 * 109.46971 * 56.63751 * 13 12 7 43 43 H 0.97001 * 120.00429 * 359.97438 * 16 14 13 44 44 H 0.96999 * 119.99576 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5701 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8331 1.3083 7 6 4.0801 2.8795 -0.1251 8 1 4.0811 3.3594 0.8536 9 6 3.1842 3.6712 -1.1008 10 6 4.2005 4.5573 -1.8679 11 6 5.4244 3.6133 -1.9696 12 7 5.4438 2.8804 -0.6857 13 6 5.9385 1.5095 -0.8694 14 6 7.2978 1.5487 -1.5187 15 8 7.8045 2.6139 -1.8012 16 7 7.9500 0.4001 -1.7865 17 6 9.1865 0.4358 -2.3778 18 1 9.6376 1.3843 -2.6292 19 6 9.8592 -0.7484 -2.6534 20 7 9.3104 -1.9025 -2.3469 21 14 11.5442 -0.6998 -3.4583 22 1 12.5927 -0.6390 -2.4085 23 1 11.7361 -1.9222 -4.2793 24 1 11.6434 0.5005 -4.3270 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.6267 -0.1478 1.4526 33 1 5.1637 0.7297 1.2628 34 1 3.8111 1.4832 2.1409 35 1 2.6684 2.9965 -1.7841 36 1 2.4704 4.2879 -0.5546 37 1 4.4451 5.4537 -1.2980 38 1 3.8239 4.8163 -2.8575 39 1 6.3406 4.1913 -2.0904 40 1 5.3023 2.9190 -2.8010 41 1 6.0130 1.0172 0.1002 42 1 5.2477 0.9562 -1.5056 43 1 7.5447 -0.4518 -1.5610 44 1 9.7799 -2.7291 -2.5397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135351285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:03 Heat of formation + Delta-G solvation = -55.019918 kcal Electronic energy + Delta-G solvation = -21582.301015 eV Core-core repulsion = 18533.618676 eV Total energy + Delta-G solvation = -3048.682339 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.35742 -39.53166 -36.81061 -35.90637 -33.78857 -33.15123 -32.61913 -28.90551 -28.30040 -27.35386 -26.07341 -23.59233 -22.35787 -21.70397 -21.23039 -20.21749 -19.51314 -18.10126 -16.87115 -16.81477 -16.33750 -16.17874 -15.80565 -15.67814 -15.04837 -14.62665 -14.49748 -14.30837 -14.06044 -13.66409 -13.48054 -13.42338 -13.13059 -12.93520 -12.90054 -12.55537 -12.42688 -12.23741 -12.19055 -12.09021 -11.83465 -11.78422 -11.63768 -11.49508 -11.22342 -11.16308 -10.96403 -10.20155 -10.01182 -9.07885 -8.47082 -5.95874 1.36951 1.40334 1.53265 2.04150 2.28316 2.88758 3.19199 3.35019 3.67769 3.83682 3.88290 4.00817 4.11262 4.21280 4.29233 4.35368 4.42147 4.45611 4.52636 4.61783 4.63937 4.74194 4.81656 4.90963 4.93199 4.98316 5.04330 5.10657 5.16089 5.19328 5.27912 5.30230 5.34545 5.38863 5.40287 5.46574 5.58874 5.64022 5.91942 6.08996 6.25766 6.60516 7.12383 7.55204 8.11540 8.70530 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.004658 C = 0.004053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.871631 B = 6009.097426 C = 6906.838737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.118 4.118 5 H 0.068 0.932 6 C -0.152 4.152 7 C 0.075 3.925 8 H 0.088 0.912 9 C -0.129 4.129 10 C -0.126 4.126 11 C 0.055 3.945 12 N -0.520 5.520 13 C 0.044 3.956 14 C 0.435 3.565 15 O -0.617 6.617 16 N -0.574 5.574 17 C -0.334 4.334 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.269 1.269 24 H -0.273 1.273 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.019 0.981 41 H 0.115 0.885 42 H 0.068 0.932 43 H 0.395 0.605 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.148 3.932 5.233 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.145 4.145 4 C -0.137 4.137 5 H 0.086 0.914 6 C -0.209 4.209 7 C -0.032 4.032 8 H 0.106 0.894 9 C -0.167 4.167 10 C -0.164 4.164 11 C -0.073 4.073 12 N -0.245 5.245 13 C -0.087 4.087 14 C 0.223 3.777 15 O -0.503 6.503 16 N -0.211 5.211 17 C -0.463 4.463 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.194 1.194 24 H -0.198 1.198 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.133 0.867 42 H 0.086 0.914 43 H 0.229 0.771 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -17.397 4.687 5.372 18.801 hybrid contribution 0.605 -1.079 -0.925 1.545 sum -16.792 3.608 4.447 17.741 Atomic orbital electron populations 1.21750 0.95164 1.01737 1.02026 1.21609 0.96359 0.96906 1.01761 1.21709 0.92808 0.97063 1.02925 1.21797 0.97109 0.95701 0.99067 0.91440 1.22122 1.00468 1.01422 0.96845 1.22703 0.85727 0.95776 0.99040 0.89432 1.22959 0.97484 0.98200 0.98048 1.22755 0.94238 0.98032 1.01400 1.22886 0.98967 0.96009 0.89416 1.63461 1.23035 1.12419 1.25561 1.22362 0.91963 0.92513 1.01832 1.20947 0.89208 0.83890 0.83686 1.90467 1.70551 1.30721 1.58537 1.41919 1.17346 1.07465 1.54409 1.19659 0.95031 0.94213 1.37419 0.90436 1.26028 1.03316 0.93928 0.97885 1.69677 1.40426 0.97971 1.48105 0.84935 0.77253 0.77933 0.78249 1.19621 1.19400 1.19825 0.92199 0.92703 0.92733 0.93119 0.91756 0.90933 0.90940 0.91459 0.93453 0.91660 0.90412 0.88520 0.90586 0.89802 0.92382 0.96254 0.86743 0.91443 0.77150 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.34 16 2 C -0.13 -2.12 5.70 30.60 0.17 -1.95 16 3 C -0.11 -1.79 4.17 30.60 0.13 -1.66 16 4 C -0.12 -2.57 1.60 -10.80 -0.02 -2.59 16 5 H 0.07 1.73 5.14 -2.39 -0.01 1.71 16 6 C -0.15 -3.25 8.76 71.98 0.63 -2.62 16 7 C 0.07 1.86 3.23 45.26 0.15 2.01 16 8 H 0.09 2.11 7.86 -2.38 -0.02 2.09 16 9 C -0.13 -2.63 5.27 31.77 0.17 -2.47 16 10 C -0.13 -3.14 7.08 31.98 0.23 -2.91 16 11 C 0.05 1.96 5.19 86.77 0.45 2.41 16 12 N -0.52 -18.06 5.10 -865.10 -4.41 -22.47 16 13 C 0.04 1.64 4.17 85.56 0.36 2.00 16 14 C 0.44 21.80 7.44 87.66 0.65 22.46 16 15 O -0.62 -35.30 13.61 -3.07 -0.04 -35.34 16 16 N -0.57 -30.63 5.29 -306.99 -1.62 -32.25 16 17 C -0.33 -19.48 9.68 84.04 0.81 -18.66 16 18 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 21 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.06 6.44 -2.39 -0.02 1.04 16 30 H 0.07 1.16 5.70 -2.39 -0.01 1.14 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.29 6.29 -2.39 -0.02 1.27 16 33 H 0.05 1.20 5.24 -2.38 -0.01 1.19 16 34 H 0.06 1.25 8.00 -2.39 -0.02 1.23 16 35 H 0.08 1.51 6.20 -2.38 -0.01 1.49 16 36 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.51 6.84 -2.39 -0.02 2.49 16 40 H 0.02 0.74 7.73 -2.39 -0.02 0.72 16 41 H 0.12 3.96 4.77 -2.39 -0.01 3.95 16 42 H 0.07 2.35 5.88 -2.39 -0.01 2.33 16 43 H 0.39 20.06 7.90 -92.71 -0.73 19.33 16 44 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -66.79 330.21 1.40 -65.39 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: 0.26 Total: 34.69 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: 4.91 Total: -5.50 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -5.75 Total: -105.00 kcal Atomic # 8 Polarization: -35.30 SS G_CDS: -0.04 Total: -35.34 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -66.79 1.40 -65.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135351285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.373 kcal (2) G-P(sol) polarization free energy of solvation -66.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds