Wall clock time and date at job start Mon Mar 30 2020 00:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46753 * 2 1 4 4 C 1.53009 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46751 * 55.00645 * 4 3 2 6 6 C 1.52994 * 109.46956 * 295.00095 * 4 3 2 7 7 C 1.53003 * 109.46750 * 175.00428 * 4 3 2 8 8 H 1.09008 * 110.59466 * 300.51176 * 7 4 3 9 9 C 1.55096 * 110.83087 * 63.53847 * 7 4 3 10 10 C 1.54597 * 102.84579 * 155.84731 * 9 7 4 11 11 C 1.53997 * 105.22502 * 338.15078 * 10 9 7 12 12 N 1.47902 * 107.05716 * 358.72783 * 11 10 9 13 13 C 1.46902 * 111.00146 * 145.84374 * 12 11 10 14 14 C 1.50703 * 109.47022 * 66.75514 * 13 12 11 15 15 O 1.21295 * 120.00150 * 6.93327 * 14 13 12 16 16 N 1.34773 * 120.00123 * 186.92594 * 14 13 12 17 17 C 1.37099 * 120.00217 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00051 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00091 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99671 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47490 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47075 * 119.99852 * 21 19 17 24 24 H 1.48498 * 109.47202 * 239.99908 * 21 19 17 25 25 H 1.09003 * 109.46763 * 299.99492 * 1 2 3 26 26 H 1.08998 * 109.47685 * 59.99396 * 1 2 3 27 27 H 1.08996 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46798 * 240.00904 * 2 1 3 29 29 H 1.08994 * 109.47648 * 120.00076 * 2 1 3 30 30 H 1.09003 * 109.47071 * 60.00697 * 3 2 1 31 31 H 1.08999 * 109.47792 * 300.00235 * 3 2 1 32 32 H 1.09003 * 109.47219 * 61.24693 * 6 4 3 33 33 H 1.09006 * 109.46802 * 181.24440 * 6 4 3 34 34 H 1.08994 * 109.47733 * 301.24425 * 6 4 3 35 35 H 1.08996 * 110.71070 * 37.54078 * 9 7 4 36 36 H 1.09005 * 110.81160 * 274.20228 * 9 7 4 37 37 H 1.08995 * 110.31219 * 219.18671 * 10 9 7 38 38 H 1.09006 * 110.30927 * 97.11541 * 10 9 7 39 39 H 1.08998 * 109.91689 * 118.07599 * 11 10 9 40 40 H 1.08991 * 109.91726 * 239.37104 * 11 10 9 41 41 H 1.08993 * 109.47359 * 186.75573 * 13 12 11 42 42 H 1.08998 * 109.46955 * 306.76279 * 13 12 11 43 43 H 0.97001 * 119.99865 * 0.02562 * 16 14 13 44 44 H 0.97004 * 119.99732 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8534 -0.8427 6 6 4.0805 0.8328 1.3063 7 6 4.0798 2.8797 -0.1263 8 1 3.7188 3.3354 -1.0483 9 6 3.6552 3.7250 1.1028 10 6 4.7153 4.8498 1.1292 11 6 5.9175 4.2911 0.3455 12 7 5.5636 2.9163 -0.0695 13 6 6.1486 2.5943 -1.3780 14 6 7.6499 2.5411 -1.2576 15 8 8.1743 2.6254 -0.1671 16 7 8.4099 2.3996 -2.3616 17 6 9.7756 2.3507 -2.2521 18 1 10.2425 2.4259 -1.2811 19 6 10.5592 2.2053 -3.3904 20 7 9.9910 2.1143 -4.5718 21 14 12.4199 2.1394 -3.2412 22 1 12.8068 2.2630 -1.8127 23 1 12.9140 0.8460 -3.7781 24 1 13.0185 3.2572 -4.0140 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9565 -0.8899 32 1 3.7356 -0.1982 1.3854 33 1 5.1703 0.8530 1.3154 34 1 3.6995 1.4089 2.1494 35 1 3.7016 3.1297 2.0147 36 1 2.6568 4.1392 0.9617 37 1 5.0042 5.0735 2.1561 38 1 4.3292 5.7452 0.6419 39 1 6.1065 4.9072 -0.5335 40 1 6.8001 4.2705 0.9846 41 1 5.7766 1.6266 -1.7142 42 1 5.8691 3.3618 -2.0997 43 1 7.9906 2.3324 -3.2337 44 1 10.5380 2.0133 -5.3665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135351322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:08 Heat of formation + Delta-G solvation = -55.547130 kcal Electronic energy + Delta-G solvation = -21241.373823 eV Core-core repulsion = 18192.668622 eV Total energy + Delta-G solvation = -3048.705200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.57322 -37.77164 -35.95048 -33.86848 -32.18745 -31.85996 -31.07557 -27.54107 -26.66078 -26.53723 -24.20812 -22.97469 -21.37464 -20.51318 -19.02523 -18.77208 -17.79373 -16.03018 -15.78565 -15.40651 -15.22807 -14.52665 -14.32774 -14.04353 -13.92602 -13.76681 -13.18446 -13.11869 -12.68002 -12.41004 -11.99810 -11.90924 -11.78086 -11.58715 -11.49011 -11.45008 -11.10842 -11.06487 -10.99448 -10.76752 -10.49647 -10.44492 -10.31704 -10.18589 -10.16135 -10.07217 -9.45912 -8.37513 -7.92893 -7.83600 -6.37831 -3.78253 3.18681 3.28787 3.36231 3.97202 4.06630 4.27385 4.68015 4.77453 4.91369 4.94741 5.03581 5.09418 5.25099 5.27655 5.30703 5.40065 5.48204 5.56239 5.63163 5.69544 5.74951 5.78831 5.87660 5.88447 5.92479 5.96049 6.00894 6.04233 6.12280 6.19631 6.25342 6.26592 6.35281 6.37758 6.53185 6.58803 6.74206 7.33134 7.38572 7.59030 8.11308 8.67068 9.22904 9.59892 10.12358 10.80264 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.004021 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.971708 B = 6961.514631 C = 7588.805277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.075 4.075 5 H 0.068 0.932 6 C -0.141 4.141 7 C 0.066 3.934 8 H 0.047 0.953 9 C -0.119 4.119 10 C -0.132 4.132 11 C 0.045 3.955 12 N -0.484 5.484 13 C 0.037 3.963 14 C 0.446 3.554 15 O -0.576 6.576 16 N -0.568 5.568 17 C -0.296 4.296 18 H 0.103 0.897 19 C 0.021 3.979 20 N -0.903 5.903 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.282 1.282 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.045 0.955 43 H 0.391 0.609 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.326 0.331 6.673 18.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.094 4.094 5 H 0.086 0.914 6 C -0.198 4.198 7 C -0.043 4.043 8 H 0.065 0.935 9 C -0.156 4.156 10 C -0.170 4.170 11 C -0.083 4.083 12 N -0.207 5.207 13 C -0.094 4.094 14 C 0.231 3.769 15 O -0.459 6.459 16 N -0.205 5.205 17 C -0.426 4.426 18 H 0.121 0.879 19 C -0.181 4.181 20 N -0.545 5.545 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.208 1.208 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.063 0.937 43 H 0.224 0.776 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.648 -0.012 7.591 18.298 hybrid contribution 0.424 0.532 -1.412 1.567 sum -16.224 0.520 6.180 17.369 Atomic orbital electron populations 1.21777 0.96295 1.01293 1.01555 1.21575 0.95314 0.97232 1.02240 1.21651 0.95159 0.96556 1.01707 1.20987 0.93980 0.95071 0.99395 0.91381 1.21813 1.03064 0.98848 0.96049 1.22853 0.88774 0.95531 0.97109 0.93523 1.22596 0.97668 0.96530 0.98854 1.22435 0.95912 0.97844 1.00858 1.22805 0.98464 0.88031 0.98992 1.64412 1.05365 1.25208 1.25762 1.22069 0.95422 1.01432 0.90519 1.19756 0.87587 0.84235 0.85317 1.90511 1.73954 1.54782 1.26676 1.41883 1.06823 1.64211 1.07590 1.19741 0.81029 1.46609 0.95195 0.87931 1.25247 1.00636 0.97503 0.94666 1.69626 1.36385 1.50498 0.98007 0.85815 0.82368 0.77678 0.78576 1.19243 1.20778 1.20836 0.92942 0.92957 0.93042 0.92137 0.91683 0.91955 0.92430 0.93681 0.90750 0.93092 0.90183 0.91684 0.91334 0.92153 0.94467 0.89153 0.89425 0.93729 0.77588 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.14 5.69 -26.73 -0.15 -1.30 16 3 C -0.11 -1.09 4.42 -26.73 -0.12 -1.21 16 4 C -0.08 -0.91 2.32 -90.62 -0.21 -1.12 16 5 H 0.07 0.89 7.39 -51.93 -0.38 0.51 16 6 C -0.14 -1.77 8.41 37.15 0.31 -1.46 16 7 C 0.07 0.87 2.10 -65.70 -0.14 0.74 16 8 H 0.05 0.62 8.02 -51.92 -0.42 0.20 16 9 C -0.12 -1.38 5.52 -24.78 -0.14 -1.52 16 10 C -0.13 -1.68 6.92 -25.37 -0.18 -1.86 16 11 C 0.04 0.75 5.70 -2.75 -0.02 0.73 16 12 N -0.48 -8.22 3.85 -223.96 -0.86 -9.08 16 13 C 0.04 0.70 5.17 -4.97 -0.03 0.67 16 14 C 0.45 10.77 7.46 -10.99 -0.08 10.68 16 15 O -0.58 -15.81 14.73 5.54 0.08 -15.73 16 16 N -0.57 -14.70 5.29 -10.96 -0.06 -14.75 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 18 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 19 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 20 N -0.90 -24.95 13.05 55.50 0.72 -24.22 16 21 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.60 6.59 -51.93 -0.34 0.26 16 30 H 0.06 0.58 7.57 -51.93 -0.39 0.18 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.51 6.63 -51.93 -0.34 0.17 16 33 H 0.07 1.17 7.56 -51.93 -0.39 0.77 16 34 H 0.05 0.59 6.13 -51.93 -0.32 0.27 16 35 H 0.08 0.94 5.77 -51.93 -0.30 0.64 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.64 7.62 -51.93 -0.40 0.24 16 40 H 0.09 1.75 7.40 -51.93 -0.38 1.37 16 41 H 0.09 1.51 7.31 -51.93 -0.38 1.13 16 42 H 0.04 0.77 7.91 -51.93 -0.41 0.36 16 43 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 44 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 341.00 15.07 5.14 5.14 Total: -1.00 -30.37 341.00 -8.29 -38.66 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -7.68 Total: 8.20 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -0.61 Total: -4.53 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.20 Total: -48.06 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.08 Total: -15.73 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.37 -8.29 -38.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135351322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.890 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds