Wall clock time and date at job start Mon Mar 30 2020 00:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46753 * 2 1 4 4 C 1.53009 * 109.46847 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46751 * 55.00645 * 4 3 2 6 6 C 1.52994 * 109.46956 * 295.00095 * 4 3 2 7 7 C 1.53003 * 109.46750 * 175.00428 * 4 3 2 8 8 H 1.09008 * 110.59466 * 300.51176 * 7 4 3 9 9 C 1.55096 * 110.83087 * 63.53847 * 7 4 3 10 10 C 1.54597 * 102.84579 * 155.84731 * 9 7 4 11 11 C 1.53997 * 105.22502 * 338.15078 * 10 9 7 12 12 N 1.47902 * 107.05716 * 358.72783 * 11 10 9 13 13 C 1.46902 * 111.00146 * 145.84374 * 12 11 10 14 14 C 1.50703 * 109.47022 * 66.75514 * 13 12 11 15 15 O 1.21295 * 120.00150 * 6.93327 * 14 13 12 16 16 N 1.34773 * 120.00123 * 186.92594 * 14 13 12 17 17 C 1.37099 * 120.00217 * 180.02562 * 16 14 13 18 18 H 1.07998 * 120.00051 * 359.97438 * 17 16 14 19 19 C 1.38954 * 120.00091 * 180.02562 * 17 16 14 20 20 N 1.31412 * 119.99671 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99889 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47490 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47075 * 119.99852 * 21 19 17 24 24 H 1.48498 * 109.47202 * 239.99908 * 21 19 17 25 25 H 1.09003 * 109.46763 * 299.99492 * 1 2 3 26 26 H 1.08998 * 109.47685 * 59.99396 * 1 2 3 27 27 H 1.08996 * 109.47016 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46798 * 240.00904 * 2 1 3 29 29 H 1.08994 * 109.47648 * 120.00076 * 2 1 3 30 30 H 1.09003 * 109.47071 * 60.00697 * 3 2 1 31 31 H 1.08999 * 109.47792 * 300.00235 * 3 2 1 32 32 H 1.09003 * 109.47219 * 61.24693 * 6 4 3 33 33 H 1.09006 * 109.46802 * 181.24440 * 6 4 3 34 34 H 1.08994 * 109.47733 * 301.24425 * 6 4 3 35 35 H 1.08996 * 110.71070 * 37.54078 * 9 7 4 36 36 H 1.09005 * 110.81160 * 274.20228 * 9 7 4 37 37 H 1.08995 * 110.31219 * 219.18671 * 10 9 7 38 38 H 1.09006 * 110.30927 * 97.11541 * 10 9 7 39 39 H 1.08998 * 109.91689 * 118.07599 * 11 10 9 40 40 H 1.08991 * 109.91726 * 239.37104 * 11 10 9 41 41 H 1.08993 * 109.47359 * 186.75573 * 13 12 11 42 42 H 1.08998 * 109.46955 * 306.76279 * 13 12 11 43 43 H 0.97001 * 119.99865 * 0.02562 * 16 14 13 44 44 H 0.97004 * 119.99732 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9329 0.8534 -0.8427 6 6 4.0805 0.8328 1.3063 7 6 4.0798 2.8797 -0.1263 8 1 3.7188 3.3354 -1.0483 9 6 3.6552 3.7250 1.1028 10 6 4.7153 4.8498 1.1292 11 6 5.9175 4.2911 0.3455 12 7 5.5636 2.9163 -0.0695 13 6 6.1486 2.5943 -1.3780 14 6 7.6499 2.5411 -1.2576 15 8 8.1743 2.6254 -0.1671 16 7 8.4099 2.3996 -2.3616 17 6 9.7756 2.3507 -2.2521 18 1 10.2425 2.4259 -1.2811 19 6 10.5592 2.2053 -3.3904 20 7 9.9910 2.1143 -4.5718 21 14 12.4199 2.1394 -3.2412 22 1 12.8068 2.2630 -1.8127 23 1 12.9140 0.8460 -3.7781 24 1 13.0185 3.2572 -4.0140 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8901 31 1 1.6766 1.9565 -0.8899 32 1 3.7356 -0.1982 1.3854 33 1 5.1703 0.8530 1.3154 34 1 3.6995 1.4089 2.1494 35 1 3.7016 3.1297 2.0147 36 1 2.6568 4.1392 0.9617 37 1 5.0042 5.0735 2.1561 38 1 4.3292 5.7452 0.6419 39 1 6.1065 4.9072 -0.5335 40 1 6.8001 4.2705 0.9846 41 1 5.7766 1.6266 -1.7142 42 1 5.8691 3.3618 -2.0997 43 1 7.9906 2.3324 -3.2337 44 1 10.5380 2.0133 -5.3665 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135351322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:08 Heat of formation + Delta-G solvation = -74.525674 kcal Electronic energy + Delta-G solvation = -21242.196794 eV Core-core repulsion = 18192.668622 eV Total energy + Delta-G solvation = -3049.528172 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.90072 -39.52451 -36.93479 -35.92036 -33.45602 -33.07615 -32.86246 -28.62514 -28.29530 -27.41011 -26.05830 -23.93857 -22.35461 -21.69249 -20.81940 -19.89382 -19.76524 -17.64736 -17.19201 -16.59044 -16.42961 -16.20772 -15.80342 -15.57872 -15.18309 -14.95876 -14.60037 -14.04914 -13.96952 -13.69646 -13.52462 -13.22765 -12.99986 -12.95621 -12.78124 -12.52570 -12.41644 -12.33767 -12.13839 -12.12245 -12.03037 -11.83926 -11.51239 -11.44794 -11.26221 -11.10334 -11.05354 -10.30203 -10.01725 -9.23616 -8.47669 -5.96417 1.35247 1.40027 1.54603 2.04535 2.27743 2.82309 3.18747 3.34629 3.66605 3.86718 4.02010 4.11166 4.13785 4.24537 4.30220 4.31801 4.42061 4.51149 4.52548 4.59641 4.66122 4.71262 4.82286 4.94948 4.99634 5.01087 5.02520 5.09331 5.15254 5.25174 5.28308 5.31560 5.34900 5.39813 5.44245 5.51030 5.62487 5.69494 5.90791 6.05534 6.18252 6.60047 7.12211 7.55305 8.11666 8.70254 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.004021 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.971708 B = 6961.514631 C = 7588.805277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.104 4.104 4 C -0.073 4.073 5 H 0.054 0.946 6 C -0.135 4.135 7 C 0.065 3.935 8 H 0.056 0.944 9 C -0.111 4.111 10 C -0.124 4.124 11 C 0.042 3.958 12 N -0.502 5.502 13 C 0.052 3.948 14 C 0.442 3.558 15 O -0.614 6.614 16 N -0.576 5.576 17 C -0.332 4.332 18 H 0.077 0.923 19 C -0.014 4.014 20 N -0.922 5.922 21 Si 0.993 3.007 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.270 1.270 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.036 0.964 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.026 0.974 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.061 0.939 43 H 0.395 0.605 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.214 0.577 6.526 20.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.142 4.142 4 C -0.092 4.092 5 H 0.073 0.927 6 C -0.192 4.192 7 C -0.043 4.043 8 H 0.074 0.926 9 C -0.148 4.148 10 C -0.162 4.162 11 C -0.086 4.086 12 N -0.226 5.226 13 C -0.080 4.080 14 C 0.230 3.770 15 O -0.500 6.500 16 N -0.214 5.214 17 C -0.461 4.461 18 H 0.095 0.905 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.817 3.183 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.195 1.195 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.228 0.772 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.568 0.232 7.427 19.999 hybrid contribution 1.004 0.439 -1.347 1.737 sum -17.563 0.671 6.080 18.598 Atomic orbital electron populations 1.21755 0.95157 1.01764 1.02022 1.21570 0.96297 0.96741 1.01821 1.21581 0.92849 0.97171 1.02590 1.20980 0.95826 0.93969 0.98383 0.92729 1.21741 1.00530 0.99943 0.97010 1.23000 0.86007 0.96791 0.98468 0.92647 1.22612 0.98660 0.95674 0.97873 1.22397 0.94348 0.98767 1.00686 1.22733 0.99136 0.88223 0.98472 1.64362 1.08078 1.25463 1.24737 1.21893 0.91130 1.02860 0.92132 1.20751 0.89918 0.82169 0.84207 1.90482 1.75435 1.55990 1.28053 1.41950 1.06397 1.64820 1.08232 1.19685 0.82529 1.49163 0.94754 0.90464 1.26044 1.04952 0.96307 0.94011 1.69685 1.38078 1.50014 0.98496 0.84867 0.76804 0.78390 0.78245 1.19865 1.19492 1.19519 0.92290 0.92654 0.92657 0.92833 0.91929 0.90790 0.91728 0.92645 0.94491 0.91938 0.90186 0.88621 0.90688 0.90181 0.95526 0.93031 0.87912 0.92078 0.77168 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.13 -2.02 5.69 30.59 0.17 -1.84 16 3 C -0.10 -1.72 4.42 30.60 0.14 -1.58 16 4 C -0.07 -1.63 2.32 -10.79 -0.03 -1.65 16 5 H 0.05 1.37 7.39 -2.39 -0.02 1.35 16 6 C -0.14 -3.28 8.41 71.98 0.61 -2.68 16 7 C 0.06 1.60 2.10 45.32 0.10 1.69 16 8 H 0.06 1.30 8.02 -2.38 -0.02 1.28 16 9 C -0.11 -2.25 5.52 31.86 0.18 -2.07 16 10 C -0.12 -2.92 6.92 31.47 0.22 -2.70 16 11 C 0.04 1.44 5.70 86.45 0.49 1.93 16 12 N -0.50 -17.08 3.85 -862.46 -3.32 -20.40 16 13 C 0.05 1.93 5.17 85.56 0.44 2.37 16 14 C 0.44 22.14 7.46 87.66 0.65 22.79 16 15 O -0.61 -35.42 14.73 -3.08 -0.05 -35.46 16 16 N -0.58 -30.79 5.29 -306.98 -1.62 -32.41 16 17 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 18 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 19 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 20 N -0.92 -50.77 13.05 21.66 0.28 -50.49 16 21 Si 0.99 43.88 29.55 68.60 2.03 45.91 16 22 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.02 6.59 -2.39 -0.02 1.01 16 30 H 0.07 1.08 7.57 -2.39 -0.02 1.06 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.20 6.63 -2.39 -0.02 1.19 16 33 H 0.04 1.17 7.56 -2.38 -0.02 1.15 16 34 H 0.06 1.35 6.13 -2.39 -0.01 1.33 16 35 H 0.08 1.65 5.77 -2.39 -0.01 1.64 16 36 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.03 0.93 7.62 -2.39 -0.02 0.91 16 40 H 0.05 2.11 7.40 -2.39 -0.02 2.10 16 41 H 0.10 3.52 7.31 -2.39 -0.02 3.50 16 42 H 0.06 2.09 7.91 -2.39 -0.02 2.07 16 43 H 0.39 20.08 7.90 -92.71 -0.73 19.35 16 44 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -67.35 341.00 2.52 -64.83 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.24 Total: 31.90 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 4.96 Total: -3.86 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -4.66 Total: -103.31 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -0.05 Total: -35.46 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -67.35 2.52 -64.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135351322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.694 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds