Wall clock time and date at job start Mon Mar 30 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47169 * 2 1 4 4 C 1.52999 * 109.47399 * 120.00475 * 2 1 3 5 5 N 1.46499 * 109.47290 * 64.99685 * 4 2 1 6 6 C 1.34778 * 119.99908 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99912 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99938 * 179.97438 * 6 5 4 9 9 N 1.46898 * 109.47117 * 179.97438 * 8 6 5 10 10 C 1.46901 * 111.00149 * 189.99810 * 9 8 6 11 11 C 1.50697 * 109.46589 * 68.58010 * 10 9 8 12 12 H 1.07998 * 120.00714 * 356.74156 * 11 10 9 13 13 C 1.37884 * 119.99946 * 176.74782 * 11 10 9 14 14 N 1.31508 * 120.00239 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99720 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.46853 * 90.00558 * 15 13 11 17 17 H 1.48498 * 109.47326 * 209.99914 * 15 13 11 18 18 H 1.48503 * 109.47267 * 330.00808 * 15 13 11 19 19 C 1.46907 * 110.99812 * 66.04962 * 9 8 6 20 20 C 1.52999 * 109.46988 * 200.00616 * 19 9 8 21 21 C 1.53004 * 117.49520 * 242.64166 * 20 19 9 22 22 C 1.52993 * 60.00018 * 252.51438 * 21 20 19 23 23 H 1.09007 * 109.47316 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46885 * 299.99559 * 1 2 3 25 25 H 1.08997 * 109.47591 * 60.00166 * 1 2 3 26 26 H 1.09007 * 109.47181 * 239.99883 * 2 1 3 27 27 H 1.09005 * 109.47052 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47362 * 299.99950 * 3 2 1 29 29 H 1.08998 * 109.46857 * 60.00424 * 3 2 1 30 30 H 1.09006 * 109.46671 * 305.00012 * 4 2 1 31 31 H 1.08995 * 109.47476 * 185.00458 * 4 2 1 32 32 H 0.97000 * 119.99827 * 0.02562 * 5 4 2 33 33 H 1.09006 * 109.46933 * 60.00162 * 8 6 5 34 34 H 1.08992 * 109.46998 * 299.99891 * 8 6 5 35 35 H 1.09002 * 109.47209 * 188.57716 * 10 9 8 36 36 H 1.08997 * 109.47360 * 308.57880 * 10 9 8 37 37 H 0.96995 * 120.00427 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.46939 * 320.00585 * 19 9 8 39 39 H 1.08993 * 109.47311 * 80.00302 * 19 9 8 40 40 H 1.08991 * 115.55475 * 28.35172 * 20 19 9 41 41 H 1.08999 * 117.49791 * 0.02562 * 21 20 19 42 42 H 1.09004 * 117.49219 * 145.01926 * 21 20 19 43 43 H 1.09003 * 117.49794 * 252.51070 * 22 21 20 44 44 H 1.08998 * 117.50159 * 107.49507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 1.9957 -2.9681 2.1910 7 8 2.6257 -2.5512 3.1397 8 6 1.5965 -4.4201 2.1309 9 7 2.0863 -5.1126 3.3302 10 6 1.9266 -6.5671 3.2004 11 6 2.8693 -7.0836 2.1442 12 1 3.4839 -6.3938 1.5849 13 6 2.9472 -8.4369 1.8918 14 7 3.7694 -8.8876 0.9698 15 14 1.8846 -9.6301 2.8596 16 1 0.5919 -9.8253 2.1550 17 1 2.5857 -10.9338 2.9776 18 1 1.6311 -9.0797 4.2154 19 6 1.4132 -4.6148 4.5374 20 6 2.2531 -4.9602 5.7687 21 6 1.6309 -5.8939 6.8090 22 6 1.7916 -4.4040 7.1173 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 1.1488 -2.4664 0.4315 33 1 2.0311 -4.8799 1.2433 34 1 0.5102 -4.4966 2.0850 35 1 2.1529 -7.0441 4.1540 36 1 0.9000 -6.7959 2.9144 37 1 3.8245 -9.8396 0.7925 38 1 1.2969 -3.5332 4.4687 39 1 0.4318 -5.0809 4.6246 40 1 3.3266 -5.0404 5.5982 41 1 0.6234 -6.2624 6.6158 42 1 2.2952 -6.5887 7.3228 43 1 2.5615 -4.1186 7.8341 44 1 0.8897 -3.7920 7.1272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174695256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:36 Heat of formation + Delta-G solvation = -17.379802 kcal Electronic energy + Delta-G solvation = -20953.927975 eV Core-core repulsion = 17906.877834 eV Total energy + Delta-G solvation = -3047.050141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.55135 -37.64047 -36.57254 -35.18480 -33.08960 -32.39803 -28.63571 -28.01671 -27.42586 -25.77818 -23.78514 -22.00164 -21.00078 -20.60564 -20.00244 -19.48724 -16.96355 -16.62437 -16.10467 -15.58531 -15.32387 -14.56040 -14.46548 -14.26968 -13.93248 -13.45206 -13.38447 -13.32412 -12.89468 -12.58786 -12.34242 -12.27227 -12.04362 -11.68341 -11.41305 -11.33856 -11.19038 -11.07243 -10.92047 -10.80643 -10.67129 -10.53538 -9.95627 -9.75449 -9.51966 -9.28328 -9.06346 -8.80867 -8.57233 -7.36775 -6.05012 -4.02318 3.10515 3.28251 3.36091 3.39980 3.41000 4.23256 4.42686 4.56690 4.66647 4.72124 4.82790 5.20669 5.28275 5.28690 5.34275 5.36059 5.37922 5.47850 5.56137 5.58592 5.70632 5.75768 5.82403 5.87995 5.92493 5.92918 6.03946 6.09807 6.12403 6.19487 6.21001 6.37198 6.45179 6.67057 6.78904 6.87651 6.97328 7.60563 7.71336 7.93551 8.04610 8.63496 8.68307 9.02982 9.56904 11.08041 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.004997 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.778130 B = 5601.767862 C = 6947.523991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.144 4.144 4 C 0.126 3.874 5 N -0.740 5.740 6 C 0.513 3.487 7 O -0.523 6.523 8 C 0.044 3.956 9 N -0.507 5.507 10 C 0.162 3.838 11 C -0.510 4.510 12 H 0.080 0.920 13 C 0.070 3.930 14 N -0.900 5.900 15 Si 0.872 3.128 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.264 1.264 19 C 0.084 3.916 20 C -0.121 4.121 21 C -0.188 4.188 22 C -0.185 4.185 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.398 0.602 33 H 0.118 0.882 34 H 0.048 0.952 35 H 0.039 0.961 36 H -0.017 1.017 37 H 0.263 0.737 38 H 0.077 0.923 39 H 0.020 0.980 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 15.811 0.816 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.128 4.128 3 C -0.202 4.202 4 C 0.002 3.998 5 N -0.395 5.395 6 C 0.300 3.700 7 O -0.397 6.397 8 C -0.087 4.087 9 N -0.231 5.231 10 C 0.036 3.964 11 C -0.548 4.548 12 H 0.098 0.902 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.699 3.301 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.189 1.189 19 C -0.044 4.044 20 C -0.140 4.140 21 C -0.225 4.225 22 C -0.222 4.222 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.232 0.768 33 H 0.136 0.864 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.000 1.000 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.038 0.962 40 H 0.132 0.868 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.235 16.032 1.492 17.652 hybrid contribution -1.591 -1.166 -0.055 1.973 sum -8.826 14.866 1.437 17.348 Atomic orbital electron populations 1.21865 0.94816 1.02029 1.01867 1.21363 0.96373 0.96842 0.98249 1.21758 1.01329 0.95118 1.02014 1.21321 0.99986 0.80990 0.97486 1.46080 1.59409 1.09478 1.24529 1.21030 0.78860 0.88369 0.81785 1.90655 1.38414 1.77683 1.32971 1.21903 0.98228 0.90377 0.98226 1.61570 1.56077 1.06226 0.99182 1.20264 0.94952 0.82771 0.98364 1.21052 1.22562 0.92777 1.18440 0.90203 1.24877 0.95224 0.98082 0.94974 1.69888 1.37268 1.14255 1.32508 0.86904 0.80737 0.80979 0.81444 1.20407 1.21183 1.18885 1.21704 0.93087 0.99932 0.89660 1.22213 1.00942 1.01969 0.88881 1.23013 1.01991 0.92701 1.04834 1.22885 1.02889 0.96381 1.00081 0.92458 0.92538 0.92549 0.90448 0.92309 0.92322 0.92439 0.91928 0.91721 0.76811 0.86408 0.93404 0.94296 0.99988 0.92684 0.90433 0.96232 0.86848 0.89482 0.89246 0.89281 0.89555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.07 37.16 0.34 -0.80 16 2 C -0.11 -0.92 2.96 -90.62 -0.27 -1.18 16 3 C -0.14 -1.06 9.19 37.16 0.34 -0.72 16 4 C 0.13 1.44 5.06 -4.04 -0.02 1.42 16 5 N -0.74 -9.57 5.28 -60.29 -0.32 -9.89 16 6 C 0.51 8.87 7.34 -10.98 -0.08 8.79 16 7 O -0.52 -10.80 14.55 5.56 0.08 -10.72 16 8 C 0.04 0.82 5.29 -4.98 -0.03 0.79 16 9 N -0.51 -10.94 4.14 -237.51 -0.98 -11.92 16 10 C 0.16 3.93 3.63 -4.98 -0.02 3.91 16 11 C -0.51 -14.30 9.02 -34.44 -0.31 -14.61 16 12 H 0.08 2.44 7.48 -52.49 -0.39 2.05 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 15 Si 0.87 21.34 27.53 -169.99 -4.68 16.66 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.26 -6.26 6.45 56.52 0.36 -5.90 16 19 C 0.08 1.60 4.77 -3.82 -0.02 1.58 16 20 C -0.12 -2.21 5.20 -90.62 -0.47 -2.68 16 21 C -0.19 -3.01 10.18 -26.73 -0.27 -3.28 16 22 C -0.18 -2.74 10.25 -26.74 -0.27 -3.01 16 23 H 0.06 0.44 7.18 -51.93 -0.37 0.07 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.40 4.16 7.66 -40.82 -0.31 3.85 16 33 H 0.12 2.33 6.77 -51.93 -0.35 1.98 16 34 H 0.05 0.79 8.12 -51.93 -0.42 0.36 16 35 H 0.04 0.97 6.24 -51.93 -0.32 0.65 16 36 H -0.02 -0.41 7.69 -51.93 -0.40 -0.81 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.08 1.47 5.85 -51.93 -0.30 1.16 16 39 H 0.02 0.36 7.72 -51.93 -0.40 -0.04 16 40 H 0.11 2.28 8.14 -51.93 -0.42 1.86 16 41 H 0.09 1.36 8.03 -51.93 -0.42 0.94 16 42 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 352.31 15.07 5.31 5.31 Total: -1.00 -32.19 352.31 -8.94 -41.13 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -7.94 Total: 3.85 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.18 Total: -7.88 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.53 Total: -48.36 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.68 Total: 16.66 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.19 -8.94 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174695256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.754 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds