Wall clock time and date at job start Mon Mar 30 2020 01:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47169 * 2 1 4 4 C 1.52999 * 109.47399 * 120.00475 * 2 1 3 5 5 N 1.46499 * 109.47290 * 64.99685 * 4 2 1 6 6 C 1.34778 * 119.99908 * 180.02562 * 5 4 2 7 7 O 1.21281 * 119.99912 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.99938 * 179.97438 * 6 5 4 9 9 N 1.46898 * 109.47117 * 179.97438 * 8 6 5 10 10 C 1.46901 * 111.00149 * 189.99810 * 9 8 6 11 11 C 1.50697 * 109.46589 * 68.58010 * 10 9 8 12 12 H 1.07998 * 120.00714 * 356.74156 * 11 10 9 13 13 C 1.37884 * 119.99946 * 176.74782 * 11 10 9 14 14 N 1.31508 * 120.00239 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99720 * 359.97438 * 13 11 10 16 16 H 1.48509 * 109.46853 * 90.00558 * 15 13 11 17 17 H 1.48498 * 109.47326 * 209.99914 * 15 13 11 18 18 H 1.48503 * 109.47267 * 330.00808 * 15 13 11 19 19 C 1.46907 * 110.99812 * 66.04962 * 9 8 6 20 20 C 1.52999 * 109.46988 * 200.00616 * 19 9 8 21 21 C 1.53004 * 117.49520 * 242.64166 * 20 19 9 22 22 C 1.52993 * 60.00018 * 252.51438 * 21 20 19 23 23 H 1.09007 * 109.47316 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46885 * 299.99559 * 1 2 3 25 25 H 1.08997 * 109.47591 * 60.00166 * 1 2 3 26 26 H 1.09007 * 109.47181 * 239.99883 * 2 1 3 27 27 H 1.09005 * 109.47052 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47362 * 299.99950 * 3 2 1 29 29 H 1.08998 * 109.46857 * 60.00424 * 3 2 1 30 30 H 1.09006 * 109.46671 * 305.00012 * 4 2 1 31 31 H 1.08995 * 109.47476 * 185.00458 * 4 2 1 32 32 H 0.97000 * 119.99827 * 0.02562 * 5 4 2 33 33 H 1.09006 * 109.46933 * 60.00162 * 8 6 5 34 34 H 1.08992 * 109.46998 * 299.99891 * 8 6 5 35 35 H 1.09002 * 109.47209 * 188.57716 * 10 9 8 36 36 H 1.08997 * 109.47360 * 308.57880 * 10 9 8 37 37 H 0.96995 * 120.00427 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.46939 * 320.00585 * 19 9 8 39 39 H 1.08993 * 109.47311 * 80.00302 * 19 9 8 40 40 H 1.08991 * 115.55475 * 28.35172 * 20 19 9 41 41 H 1.08999 * 117.49791 * 0.02562 * 21 20 19 42 42 H 1.09004 * 117.49219 * 145.01926 * 21 20 19 43 43 H 1.09003 * 117.49794 * 252.51070 * 22 21 20 44 44 H 1.08998 * 117.50159 * 107.49507 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 -2.1329 1.1905 6 6 1.9957 -2.9681 2.1910 7 8 2.6257 -2.5512 3.1397 8 6 1.5965 -4.4201 2.1309 9 7 2.0863 -5.1126 3.3302 10 6 1.9266 -6.5671 3.2004 11 6 2.8693 -7.0836 2.1442 12 1 3.4839 -6.3938 1.5849 13 6 2.9472 -8.4369 1.8918 14 7 3.7694 -8.8876 0.9698 15 14 1.8846 -9.6301 2.8596 16 1 0.5919 -9.8253 2.1550 17 1 2.5857 -10.9338 2.9776 18 1 1.6311 -9.0797 4.2154 19 6 1.4132 -4.6148 4.5374 20 6 2.2531 -4.9602 5.7687 21 6 1.6309 -5.8939 6.8090 22 6 1.7916 -4.4040 7.1173 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6054 -0.2618 2.1369 31 1 3.1263 -0.6444 1.2951 32 1 1.1488 -2.4664 0.4315 33 1 2.0311 -4.8799 1.2433 34 1 0.5102 -4.4966 2.0850 35 1 2.1529 -7.0441 4.1540 36 1 0.9000 -6.7959 2.9144 37 1 3.8245 -9.8396 0.7925 38 1 1.2969 -3.5332 4.4687 39 1 0.4318 -5.0809 4.6246 40 1 3.3266 -5.0404 5.5982 41 1 0.6234 -6.2624 6.6158 42 1 2.2952 -6.5887 7.3228 43 1 2.5615 -4.1186 7.8341 44 1 0.8897 -3.7920 7.1272 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174695256.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:36 Heat of formation + Delta-G solvation = -39.034538 kcal Electronic energy + Delta-G solvation = -20954.866995 eV Core-core repulsion = 17906.877834 eV Total energy + Delta-G solvation = -3047.989161 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92728 -38.99226 -37.58895 -36.72552 -34.53160 -34.19201 -30.41217 -29.55030 -28.03051 -26.93608 -25.47697 -23.20409 -22.72674 -21.60124 -21.26200 -20.85604 -18.97862 -18.07906 -17.29201 -16.92258 -16.50271 -16.39492 -15.70274 -15.52313 -15.24756 -15.01765 -14.72592 -14.40415 -14.27783 -13.98173 -13.65837 -13.41411 -13.30729 -12.98972 -12.85648 -12.54980 -12.46141 -12.30517 -12.22007 -12.02113 -11.83676 -11.79350 -11.62618 -11.48758 -11.09871 -10.88219 -10.76723 -10.51043 -10.02234 -9.00841 -8.25800 -6.28888 1.35781 1.39306 1.49926 1.70236 2.18249 2.36874 2.93860 3.07697 3.25409 3.79084 3.91602 3.96761 3.99323 4.08659 4.14868 4.19410 4.36124 4.48234 4.57272 4.60297 4.68590 4.71869 4.77490 4.79930 4.82772 4.86785 4.95084 5.00633 5.05417 5.06412 5.10007 5.23160 5.27274 5.37184 5.40584 5.42286 5.56517 5.57392 6.01318 6.26642 6.62698 6.67113 6.76659 7.33533 7.35051 8.90674 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015658 B = 0.004997 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.778130 B = 5601.767862 C = 6947.523991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.101 4.101 3 C -0.143 4.143 4 C 0.125 3.875 5 N -0.721 5.721 6 C 0.515 3.485 7 O -0.561 6.561 8 C 0.044 3.956 9 N -0.531 5.531 10 C 0.177 3.823 11 C -0.515 4.515 12 H 0.037 0.963 13 C 0.012 3.988 14 N -0.947 5.947 15 Si 0.942 3.058 16 H -0.263 1.263 17 H -0.284 1.284 18 H -0.249 1.249 19 C 0.093 3.907 20 C -0.157 4.157 21 C -0.183 4.183 22 C -0.158 4.158 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.412 0.588 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.034 0.966 36 H -0.007 1.007 37 H 0.266 0.734 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.636 16.437 1.705 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 C -0.201 4.201 4 C 0.002 3.998 5 N -0.375 5.375 6 C 0.302 3.698 7 O -0.439 6.439 8 C -0.087 4.087 9 N -0.255 5.255 10 C 0.050 3.950 11 C -0.553 4.553 12 H 0.055 0.945 13 C -0.185 4.185 14 N -0.588 5.588 15 Si 0.766 3.234 16 H -0.188 1.188 17 H -0.210 1.210 18 H -0.173 1.173 19 C -0.035 4.035 20 C -0.175 4.175 21 C -0.220 4.220 22 C -0.196 4.196 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.248 0.752 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.095 0.905 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.628 16.698 2.346 19.417 hybrid contribution -0.784 -1.253 -0.407 1.533 sum -10.412 15.445 1.940 18.727 Atomic orbital electron populations 1.21863 0.93852 1.02183 1.02551 1.21325 0.97073 0.97130 0.96489 1.21760 1.01156 0.94338 1.02852 1.21453 0.99189 0.79982 0.99186 1.45928 1.58156 1.09808 1.23630 1.20798 0.78601 0.88223 0.82172 1.90637 1.40318 1.78201 1.34708 1.21877 0.99588 0.90900 0.96360 1.61434 1.57877 1.05022 1.01208 1.19959 0.94062 0.84557 0.96381 1.21244 1.22596 0.92489 1.18964 0.94474 1.25773 0.96654 1.00087 0.95987 1.70042 1.39385 1.14876 1.34501 0.85789 0.79097 0.78073 0.80489 1.18822 1.21018 1.17295 1.21655 0.93390 0.99715 0.88714 1.22121 0.99383 1.05758 0.90280 1.23090 1.02128 0.93546 1.03279 1.22976 1.03474 0.95772 0.97332 0.92578 0.92661 0.91095 0.90036 0.92665 0.90821 0.92270 0.92311 0.93246 0.75157 0.88398 0.90724 0.94839 0.98982 0.92479 0.90544 0.95064 0.89855 0.88674 0.88778 0.87886 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.07 71.98 0.65 -1.27 16 2 C -0.10 -1.54 2.96 -10.80 -0.03 -1.57 16 3 C -0.14 -1.86 9.19 71.98 0.66 -1.19 16 4 C 0.13 2.80 5.06 86.38 0.44 3.24 16 5 N -0.72 -18.25 5.28 -463.06 -2.45 -20.70 16 6 C 0.52 17.93 7.34 87.66 0.64 18.58 16 7 O -0.56 -23.57 14.55 -3.03 -0.04 -23.61 16 8 C 0.04 1.63 5.29 85.56 0.45 2.09 16 9 N -0.53 -23.12 4.14 -905.36 -3.75 -26.87 16 10 C 0.18 8.53 3.63 85.56 0.31 8.84 16 11 C -0.51 -29.64 9.02 25.60 0.23 -29.41 16 12 H 0.04 2.39 7.48 -2.91 -0.02 2.37 16 13 C 0.01 0.72 5.47 84.66 0.46 1.18 16 14 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 15 Si 0.94 43.66 27.53 68.60 1.89 45.55 16 16 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 18 H -0.25 -10.87 6.45 99.48 0.64 -10.23 16 19 C 0.09 3.45 4.77 86.30 0.41 3.86 16 20 C -0.16 -5.59 5.20 -10.79 -0.06 -5.65 16 21 C -0.18 -5.47 10.18 30.59 0.31 -5.15 16 22 C -0.16 -4.30 10.25 30.59 0.31 -3.99 16 23 H 0.06 0.74 7.18 -2.38 -0.02 0.73 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.41 8.15 7.66 -92.71 -0.71 7.44 16 33 H 0.10 4.02 6.77 -2.38 -0.02 4.00 16 34 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 35 H 0.03 1.65 6.24 -2.39 -0.01 1.63 16 36 H -0.01 -0.34 7.69 -2.39 -0.02 -0.36 16 37 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.08 2.84 5.85 -2.39 -0.01 2.83 16 39 H 0.03 1.08 7.72 -2.39 -0.02 1.06 16 40 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.09 2.68 8.03 -2.39 -0.02 2.66 16 42 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 43 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -71.15 352.31 0.93 -70.22 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: 0.18 Total: 24.50 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 4.80 Total: -10.45 kcal Atomic # 7 Polarization: -100.31 SS G_CDS: -5.90 Total: -106.21 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.04 Total: -23.61 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.89 Total: 45.55 kcal Total: -71.15 0.93 -70.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174695256.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.190 kcal (2) G-P(sol) polarization free energy of solvation -71.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds